Wall clock time and date at job start Sun Mar 29 2020 22:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.47131 * 2 1 4 4 C 1.50700 * 109.47313 * 120.00230 * 2 1 3 5 5 H 1.07997 * 120.00357 * 119.99585 * 4 2 1 6 6 C 1.37876 * 119.99656 * 299.99978 * 4 2 1 7 7 N 1.31514 * 119.99993 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99954 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.47186 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47137 * 120.00134 * 8 6 4 11 11 H 1.48499 * 109.47678 * 240.00198 * 8 6 4 12 12 C 1.50702 * 109.47245 * 240.00111 * 2 1 3 13 13 O 1.21283 * 120.00262 * 240.00295 * 12 2 1 14 14 N 1.34777 * 119.99928 * 59.72201 * 12 2 1 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 2 16 16 C 1.50694 * 109.47550 * 180.02562 * 15 14 12 17 17 N 1.31791 * 119.12432 * 269.73320 * 16 15 14 18 18 C 1.32340 * 120.81715 * 179.76067 * 17 16 15 19 19 C 1.38592 * 119.10500 * 0.49779 * 18 17 16 20 20 C 1.38596 * 118.40030 * 359.75760 * 19 18 17 21 21 N 1.31803 * 119.12189 * 89.99814 * 16 15 14 22 22 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47175 * 300.00017 * 1 2 3 24 24 H 1.09001 * 109.46739 * 59.99706 * 1 2 3 25 25 H 0.97009 * 119.99880 * 180.02562 * 7 6 4 26 26 H 0.97000 * 120.00317 * 0.28382 * 14 12 2 27 27 H 1.08998 * 109.47134 * 300.00670 * 15 14 12 28 28 H 1.09002 * 109.46857 * 59.99862 * 15 14 12 29 29 H 1.08000 * 120.44509 * 180.23657 * 18 17 16 30 30 H 1.08002 * 120.80139 * 179.77386 * 19 18 17 31 31 H 1.07998 * 120.45000 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6033 8 14 2.3214 -1.1204 4.0079 9 1 3.1465 -2.2871 3.6037 10 1 3.1466 -0.1874 4.8164 11 1 1.1662 -1.5868 4.8160 12 6 2.0324 -0.7104 -1.2305 13 8 2.7296 -1.6965 -1.1193 14 7 1.7022 -0.2532 -2.4546 15 6 2.1855 -0.9472 -3.6507 16 6 1.6792 -0.2397 -4.8812 17 7 0.5257 -0.6061 -5.4028 18 6 0.0472 -0.0046 -6.4801 19 6 0.7813 1.0152 -7.0649 20 6 1.9920 1.3689 -6.4906 21 7 2.4043 0.7255 -5.4101 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8899 24 1 -0.3633 0.5139 -0.8900 25 1 0.7087 1.1612 3.4844 26 1 1.1446 0.5355 -2.5436 27 1 3.2755 -0.9477 -3.6550 28 1 1.8218 -1.9748 -3.6465 29 1 -0.9006 -0.3071 -6.9003 30 1 0.4184 1.5223 -7.9467 31 1 2.5908 2.1591 -6.9187 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330916489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:23 Heat of formation + Delta-G solvation = -16.104400 kcal Electronic energy + Delta-G solvation = -15791.221753 eV Core-core repulsion = 13071.810680 eV Total energy + Delta-G solvation = -2719.411073 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.08591 -40.50647 -36.12318 -35.75537 -34.75281 -33.29002 -32.24448 -28.43254 -27.19122 -25.51164 -24.61272 -23.38824 -21.23503 -18.65984 -18.60606 -18.23454 -17.36938 -17.03915 -16.37751 -16.10724 -15.95723 -15.49617 -14.77344 -14.63369 -14.42607 -14.01635 -13.84174 -13.37799 -12.96904 -12.68375 -12.59817 -12.20941 -12.02325 -11.92546 -11.85298 -11.04103 -10.81262 -10.54706 -10.28129 -10.26699 -10.10257 -8.14636 -6.25217 -0.22619 0.14744 1.41240 1.42828 1.56921 1.87575 2.20346 2.47389 2.73043 2.95629 3.14913 3.19343 3.75291 3.98481 4.19361 4.25811 4.39615 4.46108 4.63747 4.73150 4.89667 4.92897 4.99784 5.37844 5.42638 5.47985 5.73884 5.91718 6.02229 6.18812 6.63457 6.84346 7.04956 7.37488 7.47670 8.91730 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055821 B = 0.004912 C = 0.004779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.482442 B = 5698.839383 C = 5858.044662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.026 3.974 3 H 0.042 0.958 4 C -0.528 4.528 5 H 0.051 0.949 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.959 3.041 9 H -0.279 1.279 10 H -0.274 1.274 11 H -0.273 1.273 12 C 0.526 3.474 13 O -0.581 6.581 14 N -0.718 5.718 15 C 0.193 3.807 16 C 0.290 3.710 17 N -0.531 5.531 18 C 0.134 3.866 19 C -0.201 4.201 20 C 0.134 3.866 21 N -0.532 5.532 22 H 0.025 0.975 23 H 0.073 0.927 24 H 0.045 0.955 25 H 0.265 0.735 26 H 0.405 0.595 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.204 0.796 30 H 0.195 0.805 31 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 4.031 -20.648 21.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.005 3.995 3 H 0.059 0.941 4 C -0.567 4.567 5 H 0.069 0.931 6 C -0.180 4.180 7 N -0.552 5.552 8 Si 0.784 3.216 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.316 3.684 13 O -0.460 6.460 14 N -0.371 5.371 15 C 0.067 3.933 16 C 0.022 3.978 17 N -0.246 5.246 18 C -0.031 4.031 19 C -0.222 4.222 20 C -0.031 4.031 21 N -0.247 5.247 22 H 0.044 0.956 23 H 0.091 0.909 24 H 0.064 0.936 25 H 0.074 0.926 26 H 0.240 0.760 27 H 0.098 0.902 28 H 0.098 0.902 29 H 0.220 0.780 30 H 0.212 0.788 31 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -2.732 2.954 -19.643 20.051 hybrid contribution -0.166 0.332 0.139 0.396 sum -2.898 3.286 -19.504 19.990 Atomic orbital electron populations 1.21544 0.95018 0.99530 1.01486 1.18819 0.95350 0.95971 0.89404 0.94066 1.21314 1.31612 1.12766 0.90960 0.93120 1.25624 0.95146 0.95752 1.01505 1.69964 1.37247 1.23661 1.24294 0.85494 0.78337 0.78567 0.79186 1.20361 1.19935 1.19871 1.21586 0.78113 0.83722 0.85012 1.90513 1.39800 1.28443 1.87268 1.45852 1.54556 1.32396 1.04335 1.19728 0.99136 0.95105 0.79294 1.22638 0.88029 0.91412 0.95761 1.68255 1.13413 1.29967 1.12946 1.24007 1.00060 0.90284 0.88731 1.23438 0.96212 0.99022 1.03531 1.24003 0.94391 0.95923 0.88778 1.68255 1.35685 1.08015 1.12713 0.95622 0.90856 0.93594 0.92572 0.76007 0.90196 0.90179 0.77978 0.78768 0.77995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.59 8.86 71.98 0.64 -4.95 16 2 C 0.03 1.35 2.64 -12.29 -0.03 1.32 16 3 H 0.04 2.23 8.14 -2.38 -0.02 2.21 16 4 C -0.53 -31.36 8.37 25.60 0.21 -31.14 16 5 H 0.05 3.21 6.75 -2.91 -0.02 3.19 16 6 C 0.02 1.07 5.30 84.65 0.45 1.51 16 7 N -0.91 -52.05 11.32 21.45 0.24 -51.81 16 8 Si 0.96 45.64 29.54 68.60 2.03 47.67 16 9 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 10 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 C 0.53 25.54 7.15 87.66 0.63 26.17 16 13 O -0.58 -32.21 15.46 -3.04 -0.05 -32.25 16 14 N -0.72 -27.38 5.44 -466.79 -2.54 -29.92 16 15 C 0.19 6.55 6.11 85.63 0.52 7.07 16 16 C 0.29 8.24 7.01 138.75 0.97 9.21 16 17 N -0.53 -13.50 10.33 -187.85 -1.94 -15.44 16 18 C 0.13 2.08 11.30 84.70 0.96 3.04 16 19 C -0.20 -2.16 10.17 22.44 0.23 -1.93 16 20 C 0.13 2.08 11.30 84.70 0.96 3.04 16 21 N -0.53 -13.55 10.34 -187.85 -1.94 -15.49 16 22 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.07 3.80 6.07 -2.39 -0.01 3.79 16 24 H 0.05 1.80 7.55 -2.39 -0.02 1.79 16 25 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 26 H 0.40 13.89 7.87 -92.71 -0.73 13.16 16 27 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 28 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.20 1.57 8.06 -2.91 -0.02 1.55 16 30 H 0.20 0.27 8.06 -2.91 -0.02 0.25 16 31 H 0.20 1.58 8.06 -2.91 -0.02 1.55 16 Total: -1.00 -74.33 275.27 1.76 -72.57 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.42 Total: 11.35 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.53 Total: 13.33 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -6.18 Total: -112.66 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.05 Total: -32.25 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.33 1.76 -72.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330916489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.467 kcal (2) G-P(sol) polarization free energy of solvation -74.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds