Wall clock time and date at job start Sun Mar 29 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47139 * 229.88067 * 3 2 1 5 5 C 1.36941 * 120.00224 * 263.91831 * 4 3 2 6 6 H 1.08003 * 120.00000 * 199.40074 * 5 4 3 7 7 C 1.38811 * 119.99685 * 19.39588 * 5 4 3 8 8 N 1.31614 * 120.00405 * 22.27859 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 202.28202 * 7 5 4 10 10 H 1.48495 * 109.47642 * 89.99756 * 9 7 5 11 11 H 1.48507 * 109.46987 * 210.00054 * 9 7 5 12 12 H 1.48499 * 109.46959 * 329.99722 * 9 7 5 13 13 C 1.46499 * 119.99916 * 83.91244 * 4 3 2 14 14 C 1.53001 * 109.46837 * 90.00529 * 13 4 3 15 15 C 1.50706 * 109.46971 * 180.02562 * 14 13 4 16 16 N 1.30276 * 126.28535 * 89.96987 * 15 14 13 17 17 N 1.28658 * 109.38409 * 180.02562 * 16 15 14 18 18 C 1.30286 * 109.37999 * 0.02562 * 17 16 15 19 19 C 1.50694 * 126.28055 * 179.97438 * 18 17 16 20 20 O 1.34357 * 107.43381 * 359.97438 * 18 17 16 21 21 H 4.40639 * 5.51499 * 179.97438 * 4 1 2 22 22 H 1.09005 * 109.47267 * 109.88130 * 3 2 1 23 23 H 1.09003 * 109.47191 * 349.88192 * 3 2 1 24 24 H 0.97004 * 120.00076 * 180.02562 * 8 7 5 25 25 H 1.08998 * 109.47265 * 330.00127 * 13 4 3 26 26 H 1.09002 * 109.47026 * 210.00187 * 13 4 3 27 27 H 1.08998 * 109.47521 * 59.99754 * 14 13 4 28 28 H 1.09002 * 109.47033 * 299.99654 * 14 13 4 29 29 H 1.09000 * 109.47602 * 90.02105 * 19 18 17 30 30 H 1.09001 * 109.46959 * 210.02465 * 19 18 17 31 31 H 1.09005 * 109.47525 * 330.01971 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8909 1.0562 5 6 3.4800 2.1818 0.7580 6 1 4.1184 2.7383 1.4282 7 6 3.0105 2.7750 -0.4059 8 7 1.9262 2.3109 -0.9899 9 14 3.9177 4.2321 -1.1432 10 1 4.9426 3.7442 -2.1005 11 1 2.9522 5.1076 -1.8551 12 1 4.5793 5.0029 -0.0599 13 6 3.2514 0.4001 2.4315 14 6 4.6449 -0.1951 2.6432 15 6 4.7657 -0.7005 4.0579 16 7 4.4719 -1.8988 4.4761 17 7 4.6966 -1.9768 5.7405 18 6 5.1410 -0.8307 6.1722 19 6 5.5238 -0.5000 7.5917 20 8 5.1952 0.0023 5.1194 21 1 -1.0502 0.0000 -0.0003 22 1 3.0092 0.3503 -0.9664 23 1 3.0098 -1.0109 0.1805 24 1 1.5983 2.7253 -1.8034 25 1 2.4978 -0.3670 2.6092 26 1 3.0998 1.2262 3.1263 27 1 5.3986 0.5721 2.4655 28 1 4.7966 -1.0212 1.9485 29 1 6.5799 -0.7222 7.7444 30 1 5.3444 0.5586 7.7791 31 1 4.9239 -1.0973 8.2784 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333050368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:29 Heat of formation + Delta-G solvation = 114.877956 kcal Electronic energy + Delta-G solvation = -15893.211124 eV Core-core repulsion = 13179.479873 eV Total energy + Delta-G solvation = -2713.731252 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -43.99840 -36.54204 -35.93848 -33.71389 -31.92589 -31.59372 -29.92660 -27.41454 -26.07499 -24.50008 -22.53233 -22.08869 -20.73855 -17.53995 -17.25357 -16.84788 -16.29366 -15.35411 -14.83371 -14.37157 -13.91016 -13.67423 -13.34963 -13.11066 -12.83077 -12.62826 -12.22070 -11.88078 -11.66661 -11.48105 -11.21642 -10.87706 -10.80612 -10.46972 -10.23217 -10.06378 -9.33654 -8.96946 -8.78820 -8.49569 -7.10873 -5.86819 -3.31893 1.34361 2.46486 2.57249 3.32849 3.40364 3.41698 3.95846 4.17258 4.36770 4.47555 4.59065 4.95603 5.10307 5.24673 5.29529 5.44697 5.54502 5.68678 5.74304 5.78477 5.86062 5.88008 6.12547 6.46429 6.58728 6.72643 7.13377 7.38215 7.68183 8.18970 8.51389 9.00940 9.17286 9.66392 10.12616 11.16094 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.006169 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.619134 B = 4537.888869 C = 5250.982862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.099 4.099 3 C 0.266 3.734 4 N -0.580 5.580 5 C -0.277 4.277 6 H 0.077 0.923 7 C 0.009 3.991 8 N -0.882 5.882 9 Si 0.901 3.099 10 H -0.286 1.286 11 H -0.292 1.292 12 H -0.279 1.279 13 C 0.155 3.845 14 C -0.051 4.051 15 C 0.190 3.810 16 N -0.300 5.300 17 N -0.292 5.292 18 C 0.140 3.860 19 C -0.054 4.054 20 O -0.226 6.226 21 H 0.191 0.809 22 H 0.094 0.906 23 H 0.041 0.959 24 H 0.256 0.744 25 H 0.049 0.951 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.105 0.895 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -3.923 10.528 12.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.315 4.315 2 C -0.102 4.102 3 C 0.141 3.859 4 N -0.299 5.299 5 C -0.406 4.406 6 H 0.094 0.906 7 C -0.191 4.191 8 N -0.524 5.524 9 Si 0.731 3.269 10 H -0.212 1.212 11 H -0.218 1.218 12 H -0.204 1.204 13 C 0.026 3.974 14 C -0.093 4.093 15 C -0.020 4.020 16 N -0.146 5.146 17 N -0.140 5.140 18 C -0.071 4.071 19 C -0.112 4.112 20 O -0.106 6.106 21 H 0.208 0.792 22 H 0.112 0.888 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.113 0.887 30 H 0.109 0.891 31 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.829 -5.057 10.353 12.913 hybrid contribution 0.420 2.147 -0.454 2.234 sum 6.249 -2.910 9.899 12.063 Atomic orbital electron populations 1.24195 0.95369 1.07110 1.04795 1.24188 0.95280 0.94391 0.96364 1.17789 0.83010 0.90992 0.94067 1.44027 1.74438 1.09979 1.01498 1.19200 1.25218 0.89526 1.06616 0.90552 1.24964 0.95897 0.98248 1.00007 1.70149 1.19085 1.42741 1.20420 0.86318 0.79251 0.82002 0.79357 1.21248 1.21839 1.20444 1.20677 0.91035 0.97459 0.88274 1.21316 1.04380 1.02467 0.81110 1.28539 0.94294 0.86863 0.92341 1.74397 1.19802 1.17403 1.03020 1.74314 1.15389 1.20487 1.03769 1.27879 1.00818 0.85567 0.92837 1.20257 1.03412 1.04208 0.83274 1.84808 1.65409 1.42984 1.17366 0.79216 0.88797 0.94085 0.93351 0.93308 0.92750 0.88383 0.87634 0.88743 0.89092 0.87913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.78 19.25 29.55 0.57 -6.21 16 2 C -0.10 -2.41 11.50 -37.12 -0.43 -2.84 16 3 C 0.27 6.12 5.41 -6.83 -0.04 6.08 16 4 N -0.58 -13.56 2.49 -176.57 -0.44 -13.99 16 5 C -0.28 -7.10 9.63 -15.06 -0.14 -7.24 16 6 H 0.08 1.91 7.92 -52.48 -0.42 1.49 16 7 C 0.01 0.24 4.82 -17.43 -0.08 0.16 16 8 N -0.88 -24.47 9.61 55.49 0.53 -23.94 16 9 Si 0.90 20.76 29.61 -169.99 -5.03 15.73 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 C 0.15 3.06 5.66 -4.04 -0.02 3.04 16 14 C -0.05 -0.84 6.17 -27.88 -0.17 -1.02 16 15 C 0.19 3.22 7.73 -12.94 -0.10 3.12 16 16 N -0.30 -5.47 12.22 32.55 0.40 -5.07 16 17 N -0.29 -4.91 12.22 32.55 0.40 -4.52 16 18 C 0.14 1.94 8.48 -12.94 -0.11 1.83 16 19 C -0.05 -0.41 10.51 36.00 0.38 -0.03 16 20 O -0.23 -3.56 10.87 5.40 0.06 -3.50 16 21 H 0.19 3.66 7.80 -54.08 -0.42 3.24 16 22 H 0.09 2.32 6.59 -51.93 -0.34 1.98 16 23 H 0.04 0.82 8.12 -51.93 -0.42 0.39 16 24 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 25 H 0.05 0.98 8.07 -51.93 -0.42 0.56 16 26 H 0.05 1.10 8.04 -51.93 -0.42 0.68 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 28 H 0.11 1.67 8.14 -51.93 -0.42 1.24 16 29 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 283.06 15.07 4.27 4.27 Total: -1.00 -31.18 283.06 -3.66 -34.83 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -3.69 Total: -0.69 kcal Atomic # 6 Polarization: -2.96 SS G_CDS: -0.15 Total: -3.11 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.89 Total: -47.52 kcal Atomic # 8 Polarization: -3.56 SS G_CDS: 0.06 Total: -3.50 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.18 -3.66 -34.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333050368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.710 kcal (2) G-P(sol) polarization free energy of solvation -31.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds