Wall clock time and date at job start Sun Mar 29 2020 21:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47139 * 229.88067 * 3 2 1 5 5 C 1.36941 * 120.00224 * 263.91831 * 4 3 2 6 6 H 1.08003 * 120.00000 * 199.40074 * 5 4 3 7 7 C 1.38811 * 119.99685 * 19.39588 * 5 4 3 8 8 N 1.31614 * 120.00405 * 22.27859 * 7 5 4 9 9 Si 1.86804 * 119.99768 * 202.28202 * 7 5 4 10 10 H 1.48495 * 109.47642 * 89.99756 * 9 7 5 11 11 H 1.48507 * 109.46987 * 210.00054 * 9 7 5 12 12 H 1.48499 * 109.46959 * 329.99722 * 9 7 5 13 13 C 1.46499 * 119.99916 * 83.91244 * 4 3 2 14 14 C 1.53001 * 109.46837 * 90.00529 * 13 4 3 15 15 C 1.50706 * 109.46971 * 180.02562 * 14 13 4 16 16 N 1.30276 * 126.28535 * 89.96987 * 15 14 13 17 17 N 1.28658 * 109.38409 * 180.02562 * 16 15 14 18 18 C 1.30286 * 109.37999 * 0.02562 * 17 16 15 19 19 C 1.50694 * 126.28055 * 179.97438 * 18 17 16 20 20 O 1.34357 * 107.43381 * 359.97438 * 18 17 16 21 21 H 4.40639 * 5.51499 * 179.97438 * 4 1 2 22 22 H 1.09005 * 109.47267 * 109.88130 * 3 2 1 23 23 H 1.09003 * 109.47191 * 349.88192 * 3 2 1 24 24 H 0.97004 * 120.00076 * 180.02562 * 8 7 5 25 25 H 1.08998 * 109.47265 * 330.00127 * 13 4 3 26 26 H 1.09002 * 109.47026 * 210.00187 * 13 4 3 27 27 H 1.08998 * 109.47521 * 59.99754 * 14 13 4 28 28 H 1.09002 * 109.47033 * 299.99654 * 14 13 4 29 29 H 1.09000 * 109.47602 * 90.02105 * 19 18 17 30 30 H 1.09001 * 109.46959 * 210.02465 * 19 18 17 31 31 H 1.09005 * 109.47525 * 330.01971 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8909 1.0562 5 6 3.4800 2.1818 0.7580 6 1 4.1184 2.7383 1.4282 7 6 3.0105 2.7750 -0.4059 8 7 1.9262 2.3109 -0.9899 9 14 3.9177 4.2321 -1.1432 10 1 4.9426 3.7442 -2.1005 11 1 2.9522 5.1076 -1.8551 12 1 4.5793 5.0029 -0.0599 13 6 3.2514 0.4001 2.4315 14 6 4.6449 -0.1951 2.6432 15 6 4.7657 -0.7005 4.0579 16 7 4.4719 -1.8988 4.4761 17 7 4.6966 -1.9768 5.7405 18 6 5.1410 -0.8307 6.1722 19 6 5.5238 -0.5000 7.5917 20 8 5.1952 0.0023 5.1194 21 1 -1.0502 0.0000 -0.0003 22 1 3.0092 0.3503 -0.9664 23 1 3.0098 -1.0109 0.1805 24 1 1.5983 2.7253 -1.8034 25 1 2.4978 -0.3670 2.6092 26 1 3.0998 1.2262 3.1263 27 1 5.3986 0.5721 2.4655 28 1 4.7966 -1.0212 1.9485 29 1 6.5799 -0.7222 7.7444 30 1 5.3444 0.5586 7.7791 31 1 4.9239 -1.0973 8.2784 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333050368.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:29 Heat of formation + Delta-G solvation = 92.186961 kcal Electronic energy + Delta-G solvation = -15894.195080 eV Core-core repulsion = 13179.479873 eV Total energy + Delta-G solvation = -2714.715207 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -45.22215 -38.27886 -37.18286 -35.10576 -33.50454 -33.25541 -31.39483 -28.65477 -27.90913 -26.08973 -23.80974 -23.40514 -22.34215 -19.38596 -18.52893 -18.15365 -17.97026 -17.06742 -16.03697 -15.91132 -15.54082 -15.24207 -14.67180 -14.27356 -14.07810 -13.53720 -13.53382 -13.31607 -13.28603 -13.05662 -12.88850 -12.69294 -12.26943 -12.10820 -11.98145 -11.77988 -10.80708 -10.80087 -10.46149 -10.33093 -8.98587 -7.84064 -5.30101 0.16431 1.31246 1.34629 1.50967 1.53631 1.60607 2.29843 2.52548 2.59756 2.93445 3.28377 3.46922 3.78082 3.95271 4.08668 4.27086 4.31347 4.37827 4.47162 4.59914 4.68919 4.76501 4.91063 4.98665 5.08389 5.15474 5.29511 5.62865 5.68800 6.26617 7.07123 7.28332 7.34977 7.77450 8.21447 9.17123 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.028960 B = 0.006169 C = 0.005331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.619134 B = 4537.888869 C = 5250.982862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 C -0.135 4.135 3 C 0.268 3.732 4 N -0.593 5.593 5 C -0.277 4.277 6 H 0.081 0.919 7 C -0.040 4.040 8 N -0.911 5.911 9 Si 0.962 3.038 10 H -0.284 1.284 11 H -0.303 1.303 12 H -0.270 1.270 13 C 0.160 3.840 14 C -0.033 4.033 15 C 0.182 3.818 16 N -0.322 5.322 17 N -0.330 5.330 18 C 0.161 3.839 19 C -0.055 4.055 20 O -0.233 6.233 21 H 0.220 0.780 22 H 0.071 0.929 23 H 0.070 0.930 24 H 0.248 0.752 25 H 0.043 0.957 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.114 0.886 29 H 0.121 0.879 30 H 0.111 0.889 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.328 -3.663 12.080 14.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.138 4.138 3 C 0.143 3.857 4 N -0.313 5.313 5 C -0.407 4.407 6 H 0.098 0.902 7 C -0.237 4.237 8 N -0.555 5.555 9 Si 0.791 3.209 10 H -0.210 1.210 11 H -0.230 1.230 12 H -0.195 1.195 13 C 0.033 3.967 14 C -0.074 4.074 15 C -0.030 4.030 16 N -0.168 5.168 17 N -0.176 5.176 18 C -0.051 4.051 19 C -0.112 4.112 20 O -0.113 6.113 21 H 0.237 0.763 22 H 0.089 0.911 23 H 0.088 0.912 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.064 0.936 27 H 0.123 0.877 28 H 0.132 0.868 29 H 0.139 0.861 30 H 0.130 0.870 31 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.892 -4.825 11.949 14.614 hybrid contribution 0.094 2.031 -0.767 2.173 sum 6.986 -2.794 11.183 13.478 Atomic orbital electron populations 1.25017 0.96452 1.06146 1.03697 1.24717 0.96300 0.95367 0.97428 1.17780 0.82700 0.92174 0.93059 1.44169 1.74736 1.09564 1.02818 1.19499 1.24334 0.90382 1.06451 0.90163 1.25625 0.96610 1.00816 1.00696 1.70303 1.20528 1.44161 1.20507 0.85358 0.77788 0.79224 0.78531 1.21026 1.23029 1.19506 1.20651 0.92770 0.96945 0.86383 1.20953 1.02145 1.02730 0.81557 1.28355 0.95199 0.86861 0.92616 1.74325 1.20211 1.18182 1.04102 1.74271 1.17810 1.22187 1.03344 1.29135 0.97505 0.84300 0.94129 1.20708 1.05194 1.05884 0.79448 1.84825 1.65535 1.43263 1.17636 0.76292 0.91070 0.91247 0.94271 0.93865 0.93603 0.87707 0.86793 0.86095 0.87006 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.34 19.25 74.32 1.43 -11.91 16 2 C -0.14 -6.57 11.50 31.13 0.36 -6.22 16 3 C 0.27 12.34 5.41 84.58 0.46 12.80 16 4 N -0.59 -27.57 2.49 -712.54 -1.77 -29.34 16 5 C -0.28 -14.11 9.63 84.03 0.81 -13.30 16 6 H 0.08 3.94 7.92 -2.91 -0.02 3.91 16 7 C -0.04 -2.12 4.82 84.86 0.41 -1.71 16 8 N -0.91 -51.14 9.61 21.65 0.21 -50.94 16 9 Si 0.96 42.81 29.61 68.60 2.03 44.84 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 11 H -0.30 -13.93 7.11 99.48 0.71 -13.23 16 12 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 13 C 0.16 6.27 5.66 86.38 0.49 6.76 16 14 C -0.03 -1.05 6.17 29.85 0.18 -0.86 16 15 C 0.18 5.96 7.73 88.34 0.68 6.64 16 16 N -0.32 -11.54 12.22 -165.49 -2.02 -13.56 16 17 N -0.33 -10.71 12.22 -165.50 -2.02 -12.73 16 18 C 0.16 4.09 8.48 88.34 0.75 4.84 16 19 C -0.06 -0.64 10.51 71.23 0.75 0.11 16 20 O -0.23 -6.92 10.87 -3.61 -0.04 -6.96 16 21 H 0.22 8.12 7.80 -4.41 -0.03 8.09 16 22 H 0.07 3.59 6.59 -2.38 -0.02 3.57 16 23 H 0.07 2.72 8.12 -2.39 -0.02 2.70 16 24 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 25 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 26 H 0.05 1.84 8.04 -2.39 -0.02 1.82 16 27 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 28 H 0.11 3.47 8.14 -2.39 -0.02 3.45 16 29 H 0.12 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 Total: -1.00 -66.80 283.06 3.82 -62.98 By element: Atomic # 1 Polarization: 7.45 SS G_CDS: 1.12 Total: 8.57 kcal Atomic # 6 Polarization: -9.18 SS G_CDS: 6.32 Total: -2.86 kcal Atomic # 7 Polarization: -100.96 SS G_CDS: -5.61 Total: -106.57 kcal Atomic # 8 Polarization: -6.92 SS G_CDS: -0.04 Total: -6.96 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -66.80 3.82 -62.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333050368.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.164 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds