Wall clock time and date at job start Sun Mar 29 2020 22:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50701 * 109.47141 * 240.00363 * 2 1 3 5 5 H 1.07998 * 120.00140 * 240.00775 * 4 2 1 6 6 C 1.37878 * 120.00161 * 59.99862 * 4 2 1 7 7 N 1.31515 * 119.99703 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00460 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46954 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47242 * 120.00263 * 8 6 4 11 11 H 1.48494 * 109.47552 * 240.00395 * 8 6 4 12 12 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 13 13 O 1.21263 * 120.00018 * 119.99561 * 12 2 1 14 14 N 1.34777 * 119.99772 * 300.00005 * 12 2 1 15 15 C 1.46506 * 119.99873 * 359.97438 * 14 12 2 16 16 C 1.38932 * 120.00113 * 180.27676 * 14 12 2 17 17 N 1.32406 * 119.20477 * 359.45261 * 16 14 12 18 18 C 1.32271 * 120.75339 * 179.72273 * 17 16 14 19 19 C 1.38615 * 119.18519 * 0.53954 * 18 17 16 20 20 C 1.38610 * 118.53433 * 359.73471 * 19 18 17 21 21 N 1.32278 * 119.18723 * 359.97438 * 20 19 18 22 22 H 1.09007 * 109.46722 * 59.99511 * 1 2 3 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 25 25 H 0.97003 * 120.00172 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46892 * 90.00594 * 15 14 12 27 27 H 1.09000 * 109.46803 * 209.99767 * 15 14 12 28 28 H 1.09000 * 109.47214 * 330.00561 * 15 14 12 29 29 H 1.08004 * 120.41024 * 180.27640 * 18 17 16 30 30 H 1.07995 * 120.73450 * 179.75434 * 19 18 17 31 31 H 1.07999 * 120.40842 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2875 -3.6040 10 1 1.1660 -1.5863 -4.8163 11 1 3.1466 -0.1872 -4.8166 12 6 2.0324 -0.7105 1.2304 13 8 2.7295 -1.6965 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 0.8649 0.9413 2.5890 16 6 2.1746 -0.9018 3.5888 17 7 2.9302 -1.9800 3.4491 18 6 3.3966 -2.6210 4.5079 19 6 3.0759 -2.1574 5.7742 20 6 2.2781 -1.0292 5.8839 21 7 1.8500 -0.4325 4.7837 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7089 1.1616 -3.4843 26 1 -0.1831 0.6438 2.6222 27 1 1.1228 1.4664 3.5087 28 1 1.0288 1.6001 1.7362 29 1 4.0162 -3.4974 4.3874 30 1 3.4398 -2.6637 6.6560 31 1 2.0099 -0.6416 6.8556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001334825491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:27 Heat of formation + Delta-G solvation = 43.089199 kcal Electronic energy + Delta-G solvation = -16486.935412 eV Core-core repulsion = 13770.091167 eV Total energy + Delta-G solvation = -2716.844246 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.99059 -38.92902 -35.19951 -33.94370 -33.41788 -31.45266 -29.99745 -26.79412 -25.18961 -24.50098 -23.93516 -21.94530 -19.46760 -17.43244 -16.93093 -16.27721 -15.63485 -15.53884 -15.19097 -14.61771 -14.25326 -13.78499 -13.29595 -13.19994 -12.97241 -12.32836 -11.98800 -11.28093 -11.04132 -10.88154 -10.73634 -10.64683 -10.52839 -10.35471 -10.06737 -10.00288 -9.08456 -8.99005 -8.51139 -8.28739 -8.09518 -6.06802 -4.10232 1.16940 1.33197 2.93833 3.31582 3.39233 3.48521 3.49653 4.19714 4.30898 4.44068 4.70498 4.84163 5.21259 5.26849 5.31334 5.58327 5.69292 5.80857 5.97646 6.08097 6.31197 6.60841 6.79187 6.83266 6.92614 7.25440 7.42780 7.55211 7.77835 8.00540 8.22352 8.52459 8.97911 9.03177 9.55412 11.00913 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045743 B = 0.006676 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.964251 B = 4193.180788 C = 4714.879977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.038 3.962 3 H 0.057 0.943 4 C -0.503 4.503 5 H 0.076 0.924 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.901 3.099 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.509 3.491 13 O -0.469 6.469 14 N -0.540 5.540 15 C 0.084 3.916 16 C 0.543 3.457 17 N -0.505 5.505 18 C 0.176 3.824 19 C -0.284 4.284 20 C 0.175 3.825 21 N -0.557 5.557 22 H 0.096 0.904 23 H 0.031 0.969 24 H 0.026 0.974 25 H 0.261 0.739 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.090 0.910 29 H 0.165 0.835 30 H 0.141 0.859 31 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.360 -0.810 14.814 14.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.017 3.983 3 H 0.075 0.925 4 C -0.541 4.541 5 H 0.094 0.906 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.729 3.271 9 H -0.195 1.195 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.299 3.701 13 O -0.335 6.335 14 N -0.269 5.269 15 C -0.059 4.059 16 C 0.189 3.811 17 N -0.224 5.224 18 C 0.007 3.993 19 C -0.309 4.309 20 C 0.007 3.993 21 N -0.279 5.279 22 H 0.114 0.886 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.071 0.929 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.183 0.817 30 H 0.159 0.841 31 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 0.297 -0.744 13.571 13.595 hybrid contribution 0.524 -0.791 0.127 0.958 sum 0.821 -1.535 13.699 13.809 Atomic orbital electron populations 1.22028 0.96192 1.00280 1.01935 1.18917 0.94497 0.96764 0.88097 0.92524 1.21171 1.31196 1.12964 0.88801 0.90623 1.24932 0.95007 0.95048 0.99119 1.69874 1.36979 1.23015 1.23581 0.86369 0.78638 0.79797 0.82310 1.19506 1.20993 1.20988 1.22641 0.79262 0.85096 0.83087 1.90640 1.33674 1.24414 1.84728 1.46175 1.48979 1.28440 1.03340 1.22063 0.94006 0.86044 1.03742 1.19901 0.87991 0.86953 0.86214 1.68647 1.12272 1.07923 1.33585 1.23223 0.92330 0.96434 0.87325 1.22624 1.06337 1.01906 1.00057 1.22890 0.89741 0.90304 0.96359 1.67866 1.27457 1.34483 0.98087 0.88579 0.95017 0.95473 0.92912 0.91614 0.90361 0.89115 0.81746 0.84078 0.81727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.61 37.16 0.32 -3.03 16 2 C 0.04 0.96 1.83 -92.92 -0.17 0.79 16 3 H 0.06 1.44 7.40 -51.93 -0.38 1.06 16 4 C -0.50 -14.26 8.37 -34.44 -0.29 -14.55 16 5 H 0.08 2.28 6.75 -52.49 -0.35 1.92 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -24.82 11.32 55.43 0.63 -24.20 16 8 Si 0.90 21.76 29.54 -169.99 -5.02 16.74 16 9 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.51 12.31 7.03 -10.99 -0.08 12.23 16 13 O -0.47 -12.71 13.66 5.57 0.08 -12.64 16 14 N -0.54 -10.99 3.07 -124.80 -0.38 -11.38 16 15 C 0.08 1.35 8.53 59.85 0.51 1.86 16 16 C 0.54 10.58 8.13 -322.26 -2.62 7.96 16 17 N -0.50 -10.05 7.87 -13.83 -0.11 -10.16 16 18 C 0.18 2.54 11.30 -17.22 -0.19 2.35 16 19 C -0.28 -3.21 10.17 -39.31 -0.40 -3.61 16 20 C 0.17 2.12 11.30 -17.22 -0.19 1.92 16 21 N -0.56 -9.01 9.12 -13.83 -0.13 -9.14 16 22 H 0.10 2.39 6.07 -51.93 -0.32 2.08 16 23 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.03 0.51 4.53 -51.93 -0.24 0.27 16 25 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 26 H 0.07 0.98 6.95 -51.93 -0.36 0.62 16 27 H 0.08 1.12 7.33 -51.93 -0.38 0.74 16 28 H 0.09 1.45 6.01 -51.93 -0.31 1.14 16 29 H 0.17 1.84 8.06 -52.48 -0.42 1.42 16 30 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.17 1.29 8.06 -52.49 -0.42 0.87 16 LS Contribution 262.15 15.07 3.95 3.95 Total: -1.00 -33.29 262.15 -7.36 -40.65 By element: Atomic # 1 Polarization: 1.86 SS G_CDS: -3.17 Total: -1.31 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -3.21 Total: 7.48 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.01 Total: -54.87 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.08 Total: -12.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.29 -7.36 -40.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334825491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.741 kcal (2) G-P(sol) polarization free energy of solvation -33.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds