Wall clock time and date at job start Sun Mar 29 2020 22:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.47313 * 2 1 4 4 C 1.50701 * 109.47141 * 240.00363 * 2 1 3 5 5 H 1.07998 * 120.00140 * 240.00775 * 4 2 1 6 6 C 1.37878 * 120.00161 * 59.99862 * 4 2 1 7 7 N 1.31515 * 119.99703 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00460 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.46954 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.47242 * 120.00263 * 8 6 4 11 11 H 1.48494 * 109.47552 * 240.00395 * 8 6 4 12 12 C 1.50699 * 109.47203 * 120.00650 * 2 1 3 13 13 O 1.21263 * 120.00018 * 119.99561 * 12 2 1 14 14 N 1.34777 * 119.99772 * 300.00005 * 12 2 1 15 15 C 1.46506 * 119.99873 * 359.97438 * 14 12 2 16 16 C 1.38932 * 120.00113 * 180.27676 * 14 12 2 17 17 N 1.32406 * 119.20477 * 359.45261 * 16 14 12 18 18 C 1.32271 * 120.75339 * 179.72273 * 17 16 14 19 19 C 1.38615 * 119.18519 * 0.53954 * 18 17 16 20 20 C 1.38610 * 118.53433 * 359.73471 * 19 18 17 21 21 N 1.32278 * 119.18723 * 359.97438 * 20 19 18 22 22 H 1.09007 * 109.46722 * 59.99511 * 1 2 3 23 23 H 1.08997 * 109.47361 * 179.97438 * 1 2 3 24 24 H 1.08994 * 109.46844 * 299.99958 * 1 2 3 25 25 H 0.97003 * 120.00172 * 180.02562 * 7 6 4 26 26 H 1.08999 * 109.46892 * 90.00594 * 15 14 12 27 27 H 1.09000 * 109.46803 * 209.99767 * 15 14 12 28 28 H 1.09000 * 109.47214 * 330.00561 * 15 14 12 29 29 H 1.08004 * 120.41024 * 180.27640 * 18 17 16 30 30 H 1.07995 * 120.73450 * 179.75434 * 19 18 17 31 31 H 1.07999 * 120.40842 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3213 -1.1201 -4.0081 9 1 3.1454 -2.2875 -3.6040 10 1 1.1660 -1.5863 -4.8163 11 1 3.1466 -0.1872 -4.8166 12 6 2.0324 -0.7105 1.2304 13 8 2.7295 -1.6965 1.1190 14 7 1.7068 -0.2502 2.4545 15 6 0.8649 0.9413 2.5890 16 6 2.1746 -0.9018 3.5888 17 7 2.9302 -1.9800 3.4491 18 6 3.3966 -2.6210 4.5079 19 6 3.0759 -2.1574 5.7742 20 6 2.2781 -1.0292 5.8839 21 7 1.8500 -0.4325 4.7837 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 0.7089 1.1616 -3.4843 26 1 -0.1831 0.6438 2.6222 27 1 1.1228 1.4664 3.5087 28 1 1.0288 1.6001 1.7362 29 1 4.0162 -3.4974 4.3874 30 1 3.4398 -2.6637 6.6560 31 1 2.0099 -0.6416 6.8556 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334825491.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:09:26 Heat of formation + Delta-G solvation = 22.477061 kcal Electronic energy + Delta-G solvation = -16487.829222 eV Core-core repulsion = 13770.091167 eV Total energy + Delta-G solvation = -2717.738055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.28093 -40.52326 -36.79060 -35.90976 -34.63395 -33.05082 -31.58563 -28.20351 -27.19139 -25.91436 -25.19507 -23.55323 -21.03494 -18.76823 -18.50842 -18.16809 -17.17142 -16.87967 -16.74752 -16.21996 -15.61367 -15.26545 -14.90138 -14.58689 -14.29019 -14.14635 -13.60132 -13.02348 -12.96546 -12.73440 -12.34548 -12.27682 -12.05989 -11.90818 -11.86639 -11.44227 -11.02100 -10.69391 -10.44894 -9.84723 -9.43761 -8.17775 -6.28405 -0.01187 0.27421 1.39166 1.40753 1.50992 1.59515 1.79458 2.43200 2.95797 3.12086 3.22073 3.49784 3.84906 4.06938 4.28105 4.33966 4.48186 4.56374 4.66542 4.82219 4.86315 4.92761 5.02753 5.27421 5.42123 5.61010 5.70092 5.80583 6.05731 6.22192 6.27817 6.78067 7.22643 7.29691 7.41589 8.88522 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.045743 B = 0.006676 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.964251 B = 4193.180788 C = 4714.879977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.037 3.963 3 H 0.049 0.951 4 C -0.532 4.532 5 H 0.047 0.953 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.957 3.043 9 H -0.281 1.281 10 H -0.272 1.272 11 H -0.272 1.272 12 C 0.512 3.488 13 O -0.514 6.514 14 N -0.545 5.545 15 C 0.082 3.918 16 C 0.510 3.490 17 N -0.560 5.560 18 C 0.151 3.849 19 C -0.249 4.249 20 C 0.169 3.831 21 N -0.559 5.559 22 H 0.077 0.923 23 H 0.017 0.983 24 H 0.066 0.934 25 H 0.267 0.733 26 H 0.078 0.922 27 H 0.099 0.901 28 H 0.087 0.913 29 H 0.188 0.812 30 H 0.193 0.807 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.140 -0.697 17.185 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.016 3.984 3 H 0.067 0.933 4 C -0.571 4.571 5 H 0.065 0.935 6 C -0.176 4.176 7 N -0.547 5.547 8 Si 0.783 3.217 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.301 3.699 13 O -0.384 6.384 14 N -0.274 5.274 15 C -0.059 4.059 16 C 0.157 3.843 17 N -0.281 5.281 18 C -0.015 4.015 19 C -0.272 4.272 20 C 0.002 3.998 21 N -0.281 5.281 22 H 0.095 0.905 23 H 0.036 0.964 24 H 0.084 0.916 25 H 0.076 0.924 26 H 0.097 0.903 27 H 0.117 0.883 28 H 0.105 0.895 29 H 0.205 0.795 30 H 0.210 0.790 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 0.068 -0.616 16.014 16.026 hybrid contribution 0.637 -0.857 -0.369 1.130 sum 0.705 -1.473 15.645 15.730 Atomic orbital electron populations 1.21851 0.94640 0.99576 1.02855 1.18804 0.95679 0.95890 0.88031 0.93332 1.21270 1.31956 1.12880 0.90967 0.93458 1.25560 0.95051 0.95720 1.01285 1.69938 1.36908 1.23353 1.24453 0.85518 0.78387 0.78548 0.79276 1.20659 1.19759 1.19757 1.22262 0.78843 0.84483 0.84284 1.90599 1.35736 1.26219 1.85838 1.45834 1.49387 1.29314 1.02875 1.22219 0.94110 0.84893 1.04649 1.19871 0.89785 0.87894 0.86784 1.68489 1.13679 1.09124 1.36765 1.23797 0.92793 0.97126 0.87785 1.23142 1.03322 1.00501 1.00238 1.23870 0.88807 0.90191 0.96892 1.67901 1.27535 1.34807 0.97840 0.90476 0.96369 0.91589 0.92394 0.90337 0.88269 0.89456 0.79530 0.79027 0.76711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.11 8.61 71.98 0.62 -5.49 16 2 C 0.04 1.93 1.83 -12.29 -0.02 1.90 16 3 H 0.05 2.56 7.40 -2.39 -0.02 2.55 16 4 C -0.53 -31.44 8.37 25.60 0.21 -31.22 16 5 H 0.05 3.01 6.75 -2.91 -0.02 2.99 16 6 C 0.02 1.32 5.30 84.65 0.45 1.77 16 7 N -0.91 -50.70 11.32 21.45 0.24 -50.46 16 8 Si 0.96 45.31 29.54 68.60 2.03 47.33 16 9 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 C 0.51 25.72 7.03 87.66 0.62 26.33 16 13 O -0.51 -29.42 13.66 -2.98 -0.04 -29.46 16 14 N -0.54 -22.45 3.07 -667.16 -2.05 -24.50 16 15 C 0.08 2.58 8.53 127.77 1.09 3.67 16 16 C 0.51 19.76 8.13 261.29 2.12 21.89 16 17 N -0.56 -22.49 7.87 -197.68 -1.56 -24.05 16 18 C 0.15 4.12 11.30 84.72 0.96 5.07 16 19 C -0.25 -4.54 10.17 22.45 0.23 -4.31 16 20 C 0.17 3.37 11.30 84.71 0.96 4.33 16 21 N -0.56 -16.81 9.12 -197.68 -1.80 -18.61 16 22 H 0.08 3.88 6.07 -2.38 -0.01 3.87 16 23 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 24 H 0.07 2.48 4.53 -2.39 -0.01 2.47 16 25 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 26 H 0.08 2.23 6.95 -2.39 -0.02 2.21 16 27 H 0.10 2.67 7.33 -2.39 -0.02 2.65 16 28 H 0.09 2.77 6.01 -2.39 -0.01 2.75 16 29 H 0.19 3.90 8.06 -2.91 -0.02 3.87 16 30 H 0.19 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.22 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -76.29 262.15 5.20 -71.09 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.15 Total: 4.72 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.23 Total: 23.94 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -5.17 Total: -117.63 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.04 Total: -29.46 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.33 kcal Total: -76.29 5.20 -71.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334825491.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.567 kcal (2) G-P(sol) polarization free energy of solvation -76.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds