Wall clock time and date at job start Sun Mar 29 2020 21:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.32155 * 119.99901 * 2 1 4 4 C 1.32127 * 120.00269 * 180.02562 * 3 2 1 5 5 C 1.38394 * 119.99403 * 359.97438 * 4 3 2 6 6 N 1.32125 * 120.00091 * 359.74245 * 5 4 3 7 7 C 1.32161 * 119.99695 * 0.51194 * 6 5 4 8 8 C 1.50694 * 119.99754 * 179.76181 * 7 6 5 9 9 H 1.09002 * 109.47208 * 164.72705 * 8 7 6 10 10 C 1.52998 * 109.47384 * 284.72647 * 8 7 6 11 11 N 1.46496 * 109.47229 * 44.73011 * 8 7 6 12 12 C 1.34777 * 120.00258 * 154.99980 * 11 8 7 13 13 O 1.21682 * 119.99992 * 359.97438 * 12 11 8 14 14 C 1.46376 * 119.99803 * 180.02562 * 12 11 8 15 15 H 1.07995 * 120.00124 * 359.71785 * 14 12 11 16 16 C 1.40050 * 119.99863 * 180.02562 * 14 12 11 17 17 N 1.30676 * 119.99974 * 359.97438 * 16 14 12 18 18 Si 1.86800 * 120.00158 * 179.97438 * 16 14 12 19 19 H 1.48501 * 109.47057 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 119.99672 * 18 16 14 21 21 H 1.48495 * 109.47216 * 239.99819 * 18 16 14 22 22 H 1.09004 * 109.46885 * 269.97786 * 1 2 3 23 23 H 1.08996 * 109.46992 * 29.98026 * 1 2 3 24 24 H 1.09000 * 109.47053 * 149.98031 * 1 2 3 25 25 H 1.07994 * 120.00594 * 180.02562 * 4 3 2 26 26 H 1.07995 * 120.00038 * 180.02562 * 5 4 3 27 27 H 1.08994 * 109.47090 * 60.00153 * 10 8 7 28 28 H 1.09001 * 109.47093 * 180.02562 * 10 8 7 29 29 H 1.09002 * 109.47121 * 299.99973 * 10 8 7 30 30 H 0.96999 * 119.99694 * 334.99370 * 11 8 7 31 31 H 0.96996 * 119.99793 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1445 0.0000 4 6 3.4890 1.1446 -0.0005 5 6 4.1810 -0.0540 -0.0005 6 7 3.5203 -1.1982 0.0051 7 6 2.1987 -1.1981 0.0006 8 6 1.4452 -2.5032 0.0016 9 1 0.4041 -2.3214 0.2682 10 6 1.5126 -3.1321 -1.3915 11 7 2.0475 -3.4140 0.9782 12 6 1.3079 -4.3976 1.5279 13 8 0.1398 -4.5288 1.2132 14 6 1.9096 -5.3073 2.5041 15 1 2.9473 -5.1931 2.7806 16 6 1.1412 -6.3297 3.0748 17 7 -0.1129 -6.4712 2.7362 18 14 1.9092 -7.4911 4.3202 19 1 3.3321 -7.1215 4.5298 20 1 1.1764 -7.3910 5.6079 21 1 1.8297 -8.8842 3.8124 22 1 -0.3633 -0.0004 1.0277 23 1 -0.3633 0.8901 -0.5135 24 1 -0.3633 -0.8898 -0.5141 25 1 4.0291 2.0798 -0.0001 26 1 5.2609 -0.0540 -0.0005 27 1 2.5537 -3.3139 -1.6581 28 1 0.9672 -4.0759 -1.3908 29 1 1.0644 -2.4544 -2.1182 30 1 2.9785 -3.3092 1.2293 31 1 -0.6451 -7.1791 3.1318 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336053451.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:02 Heat of formation + Delta-G solvation = 1.645624 kcal Electronic energy + Delta-G solvation = -16225.855595 eV Core-core repulsion = 13507.214221 eV Total energy + Delta-G solvation = -2718.641374 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12900 -37.54299 -34.89348 -34.29393 -32.51843 -31.72920 -29.35232 -27.94140 -26.10444 -24.85043 -22.79128 -21.48154 -19.44084 -17.79535 -17.28151 -16.24636 -15.54480 -15.26730 -14.98565 -14.27849 -14.08854 -13.29898 -13.17589 -12.73772 -12.67024 -12.39821 -12.13450 -11.67591 -11.64537 -11.43567 -11.06322 -11.01580 -10.85734 -10.55263 -10.43191 -10.18499 -8.98037 -8.95106 -8.83984 -7.62164 -7.51626 -6.18475 -4.63077 0.84784 1.23607 3.13729 3.22134 3.26840 3.73733 4.08880 4.11647 4.26562 4.50233 4.59057 4.77612 4.97322 5.23968 5.32461 5.40928 5.64888 5.67549 5.80475 5.87986 6.02108 6.05471 6.18531 6.43560 6.51355 6.80241 7.38332 7.44812 7.87240 7.96965 8.11226 8.35399 9.03557 9.55016 10.59826 10.78131 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037686 B = 0.006237 C = 0.005839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 742.795129 B = 4488.571867 C = 4794.170679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.086 3.914 3 N -0.442 5.442 4 C 0.039 3.961 5 C 0.042 3.958 6 N -0.426 5.426 7 C 0.091 3.909 8 C 0.201 3.799 9 H 0.099 0.901 10 C -0.153 4.153 11 N -0.754 5.754 12 C 0.556 3.444 13 O -0.581 6.581 14 C -0.543 4.543 15 H 0.068 0.932 16 C 0.088 3.912 17 N -0.768 5.768 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.276 1.276 22 H 0.085 0.915 23 H 0.078 0.922 24 H 0.087 0.913 25 H 0.166 0.834 26 H 0.167 0.833 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.387 0.613 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.777 11.450 -4.963 13.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.054 4.054 3 N -0.157 5.157 4 C -0.121 4.121 5 C -0.118 4.118 6 N -0.141 5.141 7 C -0.050 4.050 8 C 0.093 3.907 9 H 0.117 0.883 10 C -0.212 4.212 11 N -0.410 5.410 12 C 0.360 3.640 13 O -0.464 6.464 14 C -0.580 4.580 15 H 0.086 0.914 16 C -0.132 4.132 17 N -0.397 5.397 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.201 1.201 22 H 0.104 0.896 23 H 0.097 0.903 24 H 0.106 0.894 25 H 0.183 0.817 26 H 0.184 0.816 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 4.734 11.242 -5.161 13.244 hybrid contribution 1.131 -0.370 0.729 1.395 sum 5.865 10.872 -4.432 13.124 Atomic orbital electron populations 1.20813 0.87637 1.03967 1.04038 1.22113 0.98542 0.88827 0.95964 1.68271 1.08952 1.29162 1.09316 1.23672 0.90896 0.99709 0.97820 1.23741 1.01777 0.88876 0.97399 1.68229 1.08338 1.29592 1.07896 1.22574 0.90656 0.96995 0.94790 1.19468 0.96527 0.83728 0.90991 0.88337 1.22149 1.02070 1.01632 0.95360 1.46175 1.14608 1.34076 1.46098 1.18238 0.85531 0.79241 0.80955 1.90586 1.17157 1.73352 1.65276 1.20910 0.98071 1.14103 1.24898 0.91415 1.25696 0.94345 0.97063 0.96049 1.70028 1.06709 1.27308 1.35608 0.86329 0.80065 0.80074 0.80377 1.18793 1.20179 1.20146 0.89603 0.90303 0.89442 0.81720 0.81602 0.92618 0.90795 0.93371 0.78074 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 9.42 36.01 0.34 -1.07 16 2 C 0.09 1.33 6.79 -82.41 -0.56 0.77 16 3 N -0.44 -6.40 10.42 -9.29 -0.10 -6.49 16 4 C 0.04 0.46 11.23 -17.37 -0.19 0.27 16 5 C 0.04 0.52 11.23 -17.37 -0.19 0.33 16 6 N -0.43 -6.89 9.74 -9.29 -0.09 -6.98 16 7 C 0.09 1.55 5.71 -82.41 -0.47 1.08 16 8 C 0.20 3.92 2.45 -69.09 -0.17 3.75 16 9 H 0.10 2.02 5.36 -51.93 -0.28 1.74 16 10 C -0.15 -2.76 9.47 37.16 0.35 -2.41 16 11 N -0.75 -17.39 5.05 -56.35 -0.28 -17.68 16 12 C 0.56 15.76 7.71 -12.99 -0.10 15.66 16 13 O -0.58 -18.29 14.68 5.21 0.08 -18.22 16 14 C -0.54 -15.45 9.54 -35.63 -0.34 -15.79 16 15 H 0.07 1.80 7.85 -52.49 -0.41 1.39 16 16 C 0.09 2.46 5.50 -17.36 -0.10 2.36 16 17 N -0.77 -22.88 11.83 55.55 0.66 -22.22 16 18 Si 0.91 20.24 29.56 -169.99 -5.02 15.22 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 22 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 23 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.09 1.14 6.40 -51.93 -0.33 0.80 16 25 H 0.17 1.30 8.06 -52.49 -0.42 0.87 16 26 H 0.17 1.44 8.06 -52.49 -0.42 1.02 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 8.45 8.03 -40.82 -0.33 8.12 16 31 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 274.40 15.07 4.14 4.14 Total: -1.00 -34.42 274.40 -5.51 -39.93 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -3.44 Total: 7.35 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -1.43 Total: 4.95 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: 0.19 Total: -53.37 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: 0.08 Total: -18.22 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -34.42 -5.51 -39.93 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336053451.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.576 kcal (2) G-P(sol) polarization free energy of solvation -34.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds