Wall clock time and date at job start Sun Mar 29 2020 21:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32147 * 120.00472 * 2 1 4 4 C 1.32125 * 120.00360 * 179.71617 * 3 2 1 5 5 C 1.38393 * 119.99614 * 0.49395 * 4 3 2 6 6 N 1.32130 * 119.99464 * 359.50462 * 5 4 3 7 7 C 1.32148 * 119.99815 * 0.25615 * 6 5 4 8 8 C 1.50709 * 119.99233 * 180.02562 * 7 6 5 9 9 H 1.09004 * 109.46810 * 194.83887 * 8 7 6 10 10 C 1.52990 * 109.47219 * 74.83925 * 8 7 6 11 11 N 1.46502 * 109.47200 * 314.83042 * 8 7 6 12 12 C 1.34766 * 120.00093 * 205.00229 * 11 8 7 13 13 O 1.21687 * 120.00429 * 0.02562 * 12 11 8 14 14 C 1.46376 * 119.99957 * 180.02562 * 12 11 8 15 15 H 1.08001 * 119.99903 * 6.65526 * 14 12 11 16 16 C 1.40048 * 119.99944 * 186.66628 * 14 12 11 17 17 N 1.30667 * 120.00160 * 6.70589 * 16 14 12 18 18 Si 1.86802 * 119.99768 * 186.70651 * 16 14 12 19 19 H 1.48510 * 109.47081 * 84.98898 * 18 16 14 20 20 H 1.48500 * 109.47044 * 204.98578 * 18 16 14 21 21 H 1.48494 * 109.47166 * 324.99109 * 18 16 14 22 22 H 1.08999 * 109.47170 * 264.17867 * 1 2 3 23 23 H 1.09002 * 109.46801 * 24.16920 * 1 2 3 24 24 H 1.08996 * 109.47395 * 144.17382 * 1 2 3 25 25 H 1.08000 * 120.00350 * 180.25494 * 4 3 2 26 26 H 1.08001 * 120.00148 * 179.78125 * 5 4 3 27 27 H 1.09004 * 109.47199 * 299.99724 * 10 8 7 28 28 H 1.08995 * 109.47453 * 60.00029 * 10 8 7 29 29 H 1.09005 * 109.47235 * 179.97438 * 10 8 7 30 30 H 0.97005 * 119.99366 * 25.01121 * 11 8 7 31 31 H 0.97003 * 119.99912 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1678 1.1444 0.0000 4 6 3.4891 1.1444 0.0057 5 6 4.1810 -0.0542 0.0013 6 7 3.5201 -1.1984 0.0013 7 6 2.1987 -1.1981 0.0004 8 6 1.4451 -2.5033 0.0010 9 1 0.4033 -2.3213 -0.2630 10 6 1.5158 -3.1324 1.3938 11 7 2.0448 -3.4140 -0.9773 12 6 1.3039 -4.3973 -1.5253 13 8 0.1365 -4.5286 -1.2078 14 6 1.9033 -5.3076 -2.5024 15 1 2.9632 -5.2609 -2.7045 16 6 1.1023 -6.2387 -3.1753 17 7 -0.1959 -6.2093 -3.0305 18 14 1.8901 -7.5229 -4.2798 19 1 2.3107 -8.6887 -3.4616 20 1 0.9090 -7.9645 -5.3032 21 1 3.0770 -6.9363 -4.9524 22 1 -0.3633 -0.1042 1.0224 23 1 -0.3633 0.9376 -0.4208 24 1 -0.3634 -0.8332 -0.6015 25 1 4.0291 2.0796 0.0098 26 1 5.2610 -0.0543 0.0023 27 1 2.5576 -3.3143 1.6579 28 1 1.0695 -2.4548 2.1216 29 1 0.9703 -4.0761 1.3944 30 1 2.9753 -3.3092 -1.2306 31 1 -0.7506 -6.8545 -3.4962 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336053453.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:05 Heat of formation + Delta-G solvation = 1.600266 kcal Electronic energy + Delta-G solvation = -16227.456767 eV Core-core repulsion = 13508.813427 eV Total energy + Delta-G solvation = -2718.643341 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.12547 -37.54802 -34.89074 -34.28640 -32.52287 -31.73564 -29.36268 -27.92823 -26.10824 -24.85335 -22.79155 -21.48457 -19.44381 -17.79777 -17.27871 -16.24749 -15.53875 -15.23911 -15.00596 -14.30126 -14.10313 -13.28214 -13.15258 -12.77681 -12.67842 -12.38553 -12.17354 -11.70479 -11.59493 -11.42423 -11.08623 -11.01536 -10.87075 -10.47572 -10.42526 -10.23051 -9.00129 -8.93823 -8.82740 -7.62337 -7.52527 -6.21441 -4.62413 0.85420 1.23882 3.15785 3.22190 3.24933 3.74564 4.09320 4.11935 4.26407 4.51014 4.58373 4.77805 4.97523 5.24801 5.31750 5.41267 5.60878 5.69137 5.78459 5.88225 6.04671 6.06533 6.17341 6.43245 6.54259 6.79200 7.38821 7.44704 7.87471 7.96739 8.10656 8.35362 9.03352 9.54494 10.59262 10.76985 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037558 B = 0.006241 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 745.341966 B = 4485.207920 C = 4775.439838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.086 3.914 3 N -0.441 5.441 4 C 0.039 3.961 5 C 0.042 3.958 6 N -0.426 5.426 7 C 0.091 3.909 8 C 0.200 3.800 9 H 0.100 0.900 10 C -0.152 4.152 11 N -0.754 5.754 12 C 0.559 3.441 13 O -0.583 6.583 14 C -0.545 4.545 15 H 0.068 0.932 16 C 0.090 3.910 17 N -0.770 5.770 18 Si 0.907 3.093 19 H -0.271 1.271 20 H -0.280 1.280 21 H -0.266 1.266 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.166 0.834 26 H 0.167 0.833 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.072 0.928 30 H 0.387 0.613 31 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.873 11.096 5.357 13.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.055 4.055 3 N -0.157 5.157 4 C -0.121 4.121 5 C -0.118 4.118 6 N -0.141 5.141 7 C -0.050 4.050 8 C 0.092 3.908 9 H 0.118 0.882 10 C -0.211 4.211 11 N -0.410 5.410 12 C 0.363 3.637 13 O -0.466 6.466 14 C -0.582 4.582 15 H 0.086 0.914 16 C -0.130 4.130 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.190 1.190 22 H 0.102 0.898 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.183 0.817 26 H 0.184 0.816 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.219 0.781 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.818 10.915 5.526 13.149 hybrid contribution 1.149 -0.416 -0.644 1.381 sum 5.967 10.499 4.882 13.026 Atomic orbital electron populations 1.20841 0.87649 1.04417 1.03690 1.22101 0.98549 0.88821 0.95986 1.68278 1.08944 1.29164 1.09283 1.23674 0.90908 0.99707 0.97817 1.23741 1.01772 0.88879 0.97403 1.68225 1.08334 1.29601 1.07900 1.22556 0.90650 0.97000 0.94821 1.19506 0.96597 0.83750 0.90929 0.88243 1.22132 1.02014 1.01584 0.95363 1.46185 1.14744 1.34015 1.46018 1.18215 0.85379 0.79291 0.80829 1.90578 1.17311 1.73682 1.65052 1.20858 0.95424 1.18236 1.23716 0.91413 1.25673 0.94386 0.97119 0.95796 1.69980 1.04470 1.31064 1.34307 0.86397 0.79557 0.81071 0.79775 1.19597 1.20538 1.19028 0.89832 0.90294 0.89030 0.81724 0.81603 0.92642 0.93373 0.90857 0.78064 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 9.54 36.01 0.34 -1.09 16 2 C 0.09 1.34 6.79 -82.42 -0.56 0.78 16 3 N -0.44 -6.42 10.42 -9.29 -0.10 -6.51 16 4 C 0.04 0.46 11.23 -17.37 -0.19 0.27 16 5 C 0.04 0.52 11.23 -17.37 -0.19 0.33 16 6 N -0.43 -6.89 9.75 -9.28 -0.09 -6.98 16 7 C 0.09 1.55 5.71 -82.41 -0.47 1.08 16 8 C 0.20 3.90 2.67 -69.08 -0.18 3.72 16 9 H 0.10 2.04 5.04 -51.93 -0.26 1.78 16 10 C -0.15 -2.73 9.47 37.15 0.35 -2.38 16 11 N -0.75 -17.39 5.05 -56.35 -0.28 -17.67 16 12 C 0.56 15.81 7.68 -12.99 -0.10 15.71 16 13 O -0.58 -18.34 14.77 5.20 0.08 -18.26 16 14 C -0.55 -15.52 9.53 -35.63 -0.34 -15.86 16 15 H 0.07 1.79 7.86 -52.49 -0.41 1.38 16 16 C 0.09 2.51 5.49 -17.37 -0.10 2.42 16 17 N -0.77 -22.91 11.91 55.55 0.66 -22.25 16 18 Si 0.91 20.26 29.56 -169.99 -5.03 15.23 16 19 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 22 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.09 1.32 6.21 -51.93 -0.32 1.00 16 25 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 26 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.07 1.48 8.14 -51.93 -0.42 1.06 16 30 H 0.39 8.45 8.05 -40.82 -0.33 8.12 16 31 H 0.27 7.27 8.29 -40.82 -0.34 6.93 16 LS Contribution 274.38 15.07 4.13 4.13 Total: -1.00 -34.36 274.38 -5.49 -39.84 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -3.42 Total: 7.49 kcal Atomic # 6 Polarization: 6.42 SS G_CDS: -1.44 Total: 4.98 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.19 Total: -53.42 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: 0.08 Total: -18.26 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.03 Total: 15.23 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -34.36 -5.49 -39.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336053453.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.445 kcal (2) G-P(sol) polarization free energy of solvation -34.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds