Wall clock time and date at job start Sun Mar 29 2020 21:37:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38114 * 120.83728 * 2 1 4 4 N 1.32548 * 119.20045 * 179.97438 * 3 2 1 5 5 C 1.31791 * 121.00943 * 0.02562 * 4 3 2 6 6 N 1.31746 * 121.83270 * 0.27537 * 5 4 3 7 7 C 1.32991 * 120.68704 * 359.44531 * 6 5 4 8 8 N 1.38545 * 120.53267 * 180.25270 * 7 6 5 9 9 C 1.47480 * 111.00081 * 96.26389 * 8 7 6 10 10 C 1.53513 * 87.93099 * 221.29878 * 9 8 7 11 11 O 1.42900 * 114.16656 * 272.37377 * 10 9 8 12 12 C 1.50699 * 114.17171 * 139.67186 * 10 9 8 13 13 H 1.07998 * 119.99990 * 266.15710 * 12 10 9 14 14 C 1.37879 * 120.00279 * 86.15616 * 12 10 9 15 15 N 1.31517 * 120.00038 * 179.97438 * 14 12 10 16 16 Si 1.86797 * 119.99891 * 0.02562 * 14 12 10 17 17 H 1.48505 * 109.47425 * 89.99817 * 16 14 12 18 18 H 1.48500 * 109.47245 * 210.00159 * 16 14 12 19 19 H 1.48508 * 109.47047 * 329.99830 * 16 14 12 20 20 C 1.47473 * 110.99997 * 0.29138 * 8 7 6 21 21 H 1.09001 * 109.47298 * 89.99628 * 1 2 3 22 22 H 1.08993 * 109.47911 * 209.99498 * 1 2 3 23 23 H 1.09005 * 109.47049 * 329.99893 * 1 2 3 24 24 H 1.08006 * 120.39838 * 0.02562 * 3 2 1 25 25 H 1.08002 * 119.07951 * 179.97438 * 5 4 3 26 26 H 1.09005 * 113.47748 * 336.06321 * 9 8 7 27 27 H 1.09000 * 113.47983 * 106.52760 * 9 8 7 28 28 H 0.96703 * 114.00541 * 273.83902 * 11 10 9 29 29 H 0.97000 * 119.99730 * 180.02562 * 15 14 12 30 30 H 1.08999 * 113.48003 * 253.46969 * 20 8 7 31 31 H 1.09005 * 113.47676 * 23.93512 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1859 0.0000 4 7 3.5399 1.1480 0.0005 5 6 4.1863 -0.0005 0.0005 6 7 3.5517 -1.1550 -0.0054 7 6 2.2226 -1.1990 -0.0005 8 7 1.5585 -2.4149 -0.0014 9 6 1.1785 -2.8107 1.3675 10 6 1.5988 -4.2433 1.0103 11 8 0.5619 -5.0260 0.4153 12 6 2.3347 -4.9630 2.1110 13 1 3.4143 -4.9509 2.1365 14 6 1.6297 -5.6371 3.0855 15 7 2.2720 -6.2656 4.0458 16 14 -0.2376 -5.6588 3.0411 17 1 -0.7004 -6.8264 2.2488 18 1 -0.7645 -5.7599 4.4257 19 1 -0.7323 -4.4071 2.4134 20 6 2.5136 -3.5386 -0.0012 21 1 -0.3634 0.0001 -1.0277 22 1 -0.3635 -0.8899 0.5137 23 1 -0.3633 0.8900 0.5139 24 1 1.6952 2.1327 0.0004 25 1 5.2663 0.0051 0.0005 26 1 1.7994 -2.3556 2.1393 27 1 0.1122 -2.7084 1.5689 28 1 -0.0129 -5.4688 1.0546 29 1 1.7760 -6.7402 4.7311 30 1 2.5788 -4.0534 -0.9598 31 1 3.4908 -3.2779 0.4052 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336922655.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:03 Heat of formation + Delta-G solvation = 40.645871 kcal Electronic energy + Delta-G solvation = -16744.456213 eV Core-core repulsion = 14027.506016 eV Total energy + Delta-G solvation = -2716.950196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.69981 -40.78890 -37.11562 -34.82077 -34.59354 -34.05616 -30.14785 -28.48110 -27.30705 -26.66264 -24.03731 -23.40069 -21.08876 -19.74083 -18.77455 -18.33581 -18.19782 -16.74057 -16.28542 -15.77481 -15.42765 -15.37368 -15.00814 -14.76142 -14.54926 -14.00718 -13.86919 -13.73124 -13.25316 -12.81161 -12.69400 -12.43433 -12.11671 -11.88461 -11.64145 -11.26272 -11.07183 -10.74154 -10.58162 -10.21186 -9.70937 -8.47576 -6.59704 -0.13229 0.04413 1.21061 1.26069 1.37010 2.13687 2.51059 2.74366 2.77823 3.15502 3.26455 3.33086 3.77542 3.84138 3.91915 3.94799 4.25767 4.38585 4.55385 4.62371 4.72684 4.79873 4.83196 4.99734 5.02000 5.18178 5.23084 5.44714 5.94781 6.00164 6.05386 6.46538 6.67495 7.07687 7.09025 8.68396 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.007981 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.727682 B = 3507.556428 C = 3793.006563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.189 4.189 3 C 0.155 3.845 4 N -0.542 5.542 5 C 0.294 3.706 6 N -0.571 5.571 7 C 0.293 3.707 8 N -0.421 5.421 9 C 0.001 3.999 10 C 0.193 3.807 11 O -0.549 6.549 12 C -0.547 4.547 13 H 0.048 0.952 14 C 0.023 3.977 15 N -0.925 5.925 16 Si 0.923 3.077 17 H -0.249 1.249 18 H -0.280 1.280 19 H -0.233 1.233 20 C 0.035 3.965 21 H 0.084 0.916 22 H 0.058 0.942 23 H 0.099 0.901 24 H 0.208 0.792 25 H 0.219 0.781 26 H 0.067 0.933 27 H 0.095 0.905 28 H 0.353 0.647 29 H 0.274 0.726 30 H 0.081 0.919 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.317 13.410 -6.151 15.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.195 4.195 3 C -0.009 4.009 4 N -0.257 5.257 5 C 0.005 3.995 6 N -0.289 5.289 7 C 0.055 3.945 8 N -0.140 5.140 9 C -0.126 4.126 10 C 0.152 3.848 11 O -0.361 6.361 12 C -0.585 4.585 13 H 0.066 0.934 14 C -0.177 4.177 15 N -0.562 5.562 16 Si 0.747 3.253 17 H -0.175 1.175 18 H -0.206 1.206 19 H -0.156 1.156 20 C -0.093 4.093 21 H 0.102 0.898 22 H 0.077 0.923 23 H 0.117 0.883 24 H 0.225 0.775 25 H 0.235 0.765 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.206 0.794 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.566 13.583 -7.061 15.975 hybrid contribution -0.664 -0.785 1.287 1.647 sum -5.230 12.798 -5.774 14.983 Atomic orbital electron populations 1.20621 0.87162 1.03822 1.03635 1.21608 1.00571 0.92705 1.04636 1.23642 0.89260 0.98743 0.89256 1.68482 1.10699 1.30598 1.15919 1.25285 1.02136 0.81824 0.90211 1.68409 1.09925 1.32877 1.17676 1.21151 0.88709 0.93718 0.90891 1.66348 1.25700 0.98843 1.23142 1.24759 1.02154 0.98199 0.87501 1.20092 0.86004 0.87196 0.91484 1.86477 1.45374 1.66746 1.37485 1.21376 0.94369 1.33793 1.08923 0.93357 1.25919 1.04241 0.93411 0.94172 1.70010 1.38493 1.33307 1.14421 0.86257 0.79282 0.81257 0.78494 1.17488 1.20644 1.15650 1.23830 0.96160 0.89158 1.00169 0.89758 0.92328 0.88260 0.77517 0.76516 0.91444 0.88679 0.79416 0.91628 0.90100 0.88500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.04 9.83 71.24 0.70 -1.34 16 2 C -0.19 -5.20 5.92 -19.56 -0.12 -5.32 16 3 C 0.16 3.62 10.99 84.56 0.93 4.54 16 4 N -0.54 -14.62 10.43 -200.31 -2.09 -16.71 16 5 C 0.29 8.53 12.28 180.90 2.22 10.75 16 6 N -0.57 -20.24 8.36 -197.61 -1.65 -21.90 16 7 C 0.29 10.38 5.85 133.16 0.78 11.16 16 8 N -0.42 -16.48 5.76 -731.71 -4.21 -20.69 16 9 C 0.00 0.04 5.69 83.57 0.48 0.52 16 10 C 0.19 9.16 1.10 -11.20 -0.01 9.14 16 11 O -0.55 -25.65 13.32 -148.98 -1.98 -27.64 16 12 C -0.55 -30.46 9.26 25.60 0.24 -30.22 16 13 H 0.05 3.00 8.06 -2.91 -0.02 2.97 16 14 C 0.02 1.29 5.47 84.65 0.46 1.75 16 15 N -0.92 -54.65 13.96 21.45 0.30 -54.35 16 16 Si 0.92 39.35 24.41 68.60 1.67 41.03 16 17 H -0.25 -10.00 7.06 99.48 0.70 -9.29 16 18 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 19 H -0.23 -8.96 5.47 99.48 0.54 -8.42 16 20 C 0.03 1.53 6.81 83.57 0.57 2.10 16 21 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 22 H 0.06 1.50 6.26 -2.39 -0.01 1.48 16 23 H 0.10 1.45 8.10 -2.38 -0.02 1.43 16 24 H 0.21 2.88 8.06 -2.91 -0.02 2.85 16 25 H 0.22 4.78 8.06 -2.91 -0.02 4.76 16 26 H 0.07 2.91 7.85 -2.38 -0.02 2.89 16 27 H 0.10 3.61 6.53 -2.39 -0.02 3.59 16 28 H 0.35 15.42 3.17 -74.06 -0.23 15.18 16 29 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 30 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 31 H 0.10 4.39 6.65 -2.38 -0.02 4.37 16 Total: -1.00 -66.12 256.41 -0.96 -67.09 By element: Atomic # 1 Polarization: 29.34 SS G_CDS: 0.75 Total: 30.09 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 6.25 Total: 3.09 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -7.66 Total: -113.66 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -1.98 Total: -27.64 kcal Atomic # 14 Polarization: 39.35 SS G_CDS: 1.67 Total: 41.03 kcal Total: -66.12 -0.96 -67.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336922655.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.732 kcal (2) G-P(sol) polarization free energy of solvation -66.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.086 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds