Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00190 * 2 1 4 4 C 1.50703 * 109.47134 * 180.02562 * 3 2 1 5 5 O 1.21268 * 119.99714 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.39270 * 119.99841 * 185.60223 * 6 4 3 8 8 C 1.39665 * 119.57386 * 18.86567 * 7 6 4 9 9 C 1.38660 * 119.49508 * 180.02562 * 8 7 6 10 10 C 1.38353 * 118.66489 * 359.75040 * 9 8 7 11 11 C 1.40574 * 119.13012 * 0.49501 * 10 9 8 12 12 C 1.41340 * 119.78299 * 179.77047 * 11 10 9 13 13 H 1.07999 * 120.00492 * 7.00179 * 12 11 10 14 14 C 1.40035 * 119.99734 * 187.00570 * 12 11 10 15 15 N 1.30743 * 119.99802 * 181.89355 * 14 12 11 16 16 Si 1.86793 * 119.99839 * 1.89199 * 14 12 11 17 17 H 1.48500 * 109.47098 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47493 * 300.00279 * 16 14 12 19 19 H 1.48505 * 109.47259 * 60.00355 * 16 14 12 20 20 N 1.31906 * 119.57317 * 198.88671 * 7 6 4 21 21 H 1.08998 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47169 * 299.99533 * 1 2 3 23 23 H 1.09000 * 109.47232 * 59.99785 * 1 2 3 24 24 H 1.00909 * 110.99966 * 236.04577 * 2 1 3 25 25 H 1.08994 * 109.46581 * 60.00260 * 3 2 1 26 26 H 1.09001 * 109.46973 * 300.00477 * 3 2 1 27 27 H 0.97003 * 120.00034 * 5.60235 * 6 4 3 28 28 H 1.08000 * 120.25511 * 0.02562 * 8 7 6 29 29 H 1.08000 * 120.66563 * 180.02562 * 9 8 7 30 30 H 1.07999 * 120.42870 * 180.24169 * 10 9 8 31 31 H 0.96997 * 119.99805 * 354.83071 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 8 4.0800 0.2651 -0.0015 6 7 4.2067 2.4799 -0.0002 7 6 5.5939 2.4458 -0.1186 8 6 6.2146 1.3017 -0.6248 9 6 7.5960 1.2693 -0.7414 10 6 8.3209 2.3823 -0.3543 11 6 7.6379 3.5016 0.1525 12 6 8.3652 4.6441 0.5565 13 1 9.4278 4.7012 0.3718 14 6 7.7080 5.7022 1.1965 15 7 8.3736 6.7748 1.5370 16 14 5.8805 5.5812 1.5635 17 1 5.4282 6.8232 2.2402 18 1 5.1308 5.4090 0.2932 19 1 5.6294 4.4153 2.4484 20 7 6.3047 3.4944 0.2493 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8306 -0.5262 -0.7814 25 1 1.6460 1.8947 0.8900 26 1 1.6459 1.8948 -0.8900 27 1 3.7477 3.3305 0.0825 28 1 5.6233 0.4486 -0.9231 29 1 8.0955 0.3945 -1.1307 30 1 9.3978 2.3894 -0.4366 31 1 9.3353 6.8079 1.4150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337077960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = -2.576671 kcal Electronic energy + Delta-G solvation = -16113.904250 eV Core-core repulsion = 13395.079783 eV Total energy + Delta-G solvation = -2718.824466 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.16637 -38.24422 -35.73608 -34.53397 -33.51107 -31.13089 -29.99019 -28.08680 -25.36553 -24.15141 -22.03484 -21.70492 -19.89460 -18.40759 -17.57075 -16.61454 -16.27173 -15.11206 -14.94456 -14.65335 -14.31359 -14.01257 -13.59569 -13.17944 -12.95614 -12.66509 -12.24195 -12.19559 -11.96573 -11.83239 -11.15682 -10.80153 -10.38821 -10.01411 -9.66298 -9.29408 -9.14585 -8.67619 -8.56145 -7.82768 -7.41037 -7.26268 -4.79613 2.19170 2.62572 3.01522 3.15737 3.52711 3.63610 3.95553 4.15916 4.36717 4.62631 4.76738 5.01243 5.10679 5.25134 5.28777 5.51678 5.63719 5.83295 6.07033 6.42434 6.50009 6.52994 6.61685 7.10338 7.12101 7.18448 7.42529 7.55504 7.59621 7.75123 8.09902 8.26847 8.44257 8.63627 9.38345 9.98719 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.007410 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.921440 B = 3778.022696 C = 4580.451877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.679 5.679 3 C 0.042 3.958 4 C 0.512 3.488 5 O -0.500 6.500 6 N -0.657 5.657 7 C 0.388 3.612 8 C -0.311 4.311 9 C -0.035 4.035 10 C -0.277 4.277 11 C 0.274 3.726 12 C -0.476 4.476 13 H 0.084 0.916 14 C 0.043 3.957 15 N -0.806 5.806 16 Si 1.158 2.842 17 H -0.332 1.332 18 H -0.285 1.285 19 H -0.293 1.293 20 N -0.599 5.599 21 H 0.071 0.929 22 H 0.066 0.934 23 H 0.022 0.978 24 H 0.353 0.647 25 H 0.105 0.895 26 H 0.064 0.936 27 H 0.407 0.593 28 H 0.139 0.861 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.616 -6.848 -3.565 14.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.311 5.311 3 C -0.091 4.091 4 C 0.298 3.702 5 O -0.373 6.373 6 N -0.303 5.303 7 C 0.157 3.843 8 C -0.336 4.336 9 C -0.059 4.059 10 C -0.299 4.299 11 C 0.150 3.850 12 C -0.509 4.509 13 H 0.102 0.898 14 C -0.178 4.178 15 N -0.428 5.428 16 Si 0.994 3.006 17 H -0.266 1.266 18 H -0.213 1.213 19 H -0.222 1.222 20 N -0.325 5.325 21 H 0.090 0.910 22 H 0.085 0.915 23 H 0.041 0.959 24 H 0.172 0.828 25 H 0.123 0.877 26 H 0.082 0.918 27 H 0.243 0.757 28 H 0.156 0.844 29 H 0.124 0.876 30 H 0.124 0.876 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -13.714 -6.112 -1.987 15.146 hybrid contribution 1.651 -0.759 -1.815 2.568 sum -12.064 -6.871 -3.802 14.394 Atomic orbital electron populations 1.22227 0.87022 1.02292 1.00511 1.60041 1.07547 1.12050 1.51500 1.21834 0.91599 0.92328 1.03332 1.20508 0.89539 0.83649 0.76503 1.90634 1.70676 1.29616 1.46413 1.43309 1.05787 1.09822 1.71397 1.18094 0.82286 0.91356 0.92517 1.21512 0.95081 1.00671 1.16341 1.20938 0.93584 0.96469 0.94887 1.21607 0.99128 0.95752 1.13419 1.18269 0.85856 0.92579 0.88346 1.20737 0.97049 1.00434 1.32647 0.89831 1.27779 1.10107 0.89984 0.89931 1.70642 1.11357 1.26648 1.34188 0.81784 0.70794 0.71697 0.76374 1.26610 1.21329 1.22165 1.65921 1.08394 1.27740 1.30453 0.90980 0.91475 0.95902 0.82833 0.87685 0.91832 0.75718 0.84396 0.87555 0.87640 0.90563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.70 60.06 0.64 0.88 16 2 N -0.68 -7.69 6.48 -122.42 -0.79 -8.48 16 3 C 0.04 0.47 6.17 -4.97 -0.03 0.44 16 4 C 0.51 8.41 7.71 -10.99 -0.08 8.32 16 5 O -0.50 -9.85 13.00 5.57 0.07 -9.78 16 6 N -0.66 -12.05 5.41 -11.40 -0.06 -12.12 16 7 C 0.39 8.95 7.51 -154.98 -1.16 7.78 16 8 C -0.31 -7.05 8.83 -38.89 -0.34 -7.40 16 9 C -0.03 -0.76 10.15 -39.38 -0.40 -1.16 16 10 C -0.28 -6.66 9.83 -38.66 -0.38 -7.04 16 11 C 0.27 7.25 6.39 -85.00 -0.54 6.70 16 12 C -0.48 -13.07 9.58 -37.73 -0.36 -13.43 16 13 H 0.08 2.28 8.05 -52.49 -0.42 1.86 16 14 C 0.04 1.17 5.52 -17.34 -0.10 1.08 16 15 N -0.81 -22.00 13.65 55.55 0.76 -21.24 16 16 Si 1.16 28.03 25.53 -169.99 -4.34 23.69 16 17 H -0.33 -7.93 7.11 56.52 0.40 -7.53 16 18 H -0.29 -6.58 6.70 56.52 0.38 -6.20 16 19 H -0.29 -7.24 7.10 56.52 0.40 -6.84 16 20 N -0.60 -15.28 4.58 -10.26 -0.05 -15.32 16 21 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 22 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 23 H 0.02 0.16 8.14 -51.93 -0.42 -0.27 16 24 H 0.35 3.97 8.51 -39.29 -0.33 3.64 16 25 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.41 6.44 8.83 -40.82 -0.36 6.08 16 28 H 0.14 3.03 5.34 -52.50 -0.28 2.75 16 29 H 0.11 2.00 8.06 -52.49 -0.42 1.57 16 30 H 0.11 2.36 8.06 -52.49 -0.42 1.94 16 31 H 0.28 7.39 8.72 -40.82 -0.36 7.03 16 LS Contribution 268.23 15.07 4.04 4.04 Total: -1.00 -31.42 268.23 -6.66 -38.08 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -3.53 Total: 4.96 kcal Atomic # 6 Polarization: -1.07 SS G_CDS: -2.76 Total: -3.83 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.14 Total: -57.16 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.07 Total: -9.78 kcal Atomic # 14 Polarization: 28.03 SS G_CDS: -4.34 Total: 23.69 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -31.42 -6.66 -38.08 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.503 kcal (2) G-P(sol) polarization free energy of solvation -31.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds