Wall clock time and date at job start Sun Mar 29 2020 22:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46903 * 111.00190 * 2 1 4 4 C 1.50703 * 109.47134 * 180.02562 * 3 2 1 5 5 O 1.21268 * 119.99714 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99816 * 180.02562 * 4 3 2 7 7 C 1.39270 * 119.99841 * 185.60223 * 6 4 3 8 8 C 1.39665 * 119.57386 * 18.86567 * 7 6 4 9 9 C 1.38660 * 119.49508 * 180.02562 * 8 7 6 10 10 C 1.38353 * 118.66489 * 359.75040 * 9 8 7 11 11 C 1.40574 * 119.13012 * 0.49501 * 10 9 8 12 12 C 1.41340 * 119.78299 * 179.77047 * 11 10 9 13 13 H 1.07999 * 120.00492 * 7.00179 * 12 11 10 14 14 C 1.40035 * 119.99734 * 187.00570 * 12 11 10 15 15 N 1.30743 * 119.99802 * 181.89355 * 14 12 11 16 16 Si 1.86793 * 119.99839 * 1.89199 * 14 12 11 17 17 H 1.48500 * 109.47098 * 180.02562 * 16 14 12 18 18 H 1.48503 * 109.47493 * 300.00279 * 16 14 12 19 19 H 1.48505 * 109.47259 * 60.00355 * 16 14 12 20 20 N 1.31906 * 119.57317 * 198.88671 * 7 6 4 21 21 H 1.08998 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.09001 * 109.47169 * 299.99533 * 1 2 3 23 23 H 1.09000 * 109.47232 * 59.99785 * 1 2 3 24 24 H 1.00909 * 110.99966 * 236.04577 * 2 1 3 25 25 H 1.08994 * 109.46581 * 60.00260 * 3 2 1 26 26 H 1.09001 * 109.46973 * 300.00477 * 3 2 1 27 27 H 0.97003 * 120.00034 * 5.60235 * 6 4 3 28 28 H 1.08000 * 120.25511 * 0.02562 * 8 7 6 29 29 H 1.08000 * 120.66563 * 180.02562 * 9 8 7 30 30 H 1.07999 * 120.42870 * 180.24169 * 10 9 8 31 31 H 0.96997 * 119.99805 * 354.83071 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5019 1.3312 -0.0006 5 8 4.0800 0.2651 -0.0015 6 7 4.2067 2.4799 -0.0002 7 6 5.5939 2.4458 -0.1186 8 6 6.2146 1.3017 -0.6248 9 6 7.5960 1.2693 -0.7414 10 6 8.3209 2.3823 -0.3543 11 6 7.6379 3.5016 0.1525 12 6 8.3652 4.6441 0.5565 13 1 9.4278 4.7012 0.3718 14 6 7.7080 5.7022 1.1965 15 7 8.3736 6.7748 1.5370 16 14 5.8805 5.5812 1.5635 17 1 5.4282 6.8232 2.2402 18 1 5.1308 5.4090 0.2932 19 1 5.6294 4.4153 2.4484 20 7 6.3047 3.4944 0.2493 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8306 -0.5262 -0.7814 25 1 1.6460 1.8947 0.8900 26 1 1.6459 1.8948 -0.8900 27 1 3.7477 3.3305 0.0825 28 1 5.6233 0.4486 -0.9231 29 1 8.0955 0.3945 -1.1307 30 1 9.3978 2.3894 -0.4366 31 1 9.3353 6.8079 1.4150 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337077960.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:09 Heat of formation + Delta-G solvation = -25.692440 kcal Electronic energy + Delta-G solvation = -16114.906624 eV Core-core repulsion = 13395.079783 eV Total energy + Delta-G solvation = -2719.826841 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.67745 -39.93320 -36.71239 -36.11346 -35.36732 -33.00659 -31.65677 -29.18671 -27.24116 -25.12423 -23.70653 -23.30072 -21.44820 -20.32257 -19.01751 -18.09431 -17.41513 -16.92988 -16.32762 -16.17103 -15.62762 -15.38562 -14.97900 -14.74784 -14.59372 -14.25697 -13.80500 -13.66708 -13.10065 -12.90439 -12.63170 -12.60807 -12.24801 -11.76763 -11.62268 -11.13114 -10.73327 -10.41975 -9.76812 -9.44085 -9.28337 -9.21494 -6.83825 0.49757 0.71982 1.54859 1.56480 1.70278 1.83781 2.06863 2.44281 2.66967 3.32363 3.52683 3.59781 4.07251 4.26977 4.35661 4.42015 4.61167 4.64475 4.68044 4.69595 4.79095 5.09473 5.34181 5.36958 5.42409 5.70501 5.76010 5.89337 5.93809 6.28213 6.35512 6.41234 6.64094 7.07178 7.48223 7.94100 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.032744 B = 0.007410 C = 0.006111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.921440 B = 3778.022696 C = 4580.451877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.701 5.701 3 C 0.053 3.947 4 C 0.512 3.488 5 O -0.534 6.534 6 N -0.655 5.655 7 C 0.377 3.623 8 C -0.309 4.309 9 C -0.028 4.028 10 C -0.294 4.294 11 C 0.258 3.742 12 C -0.509 4.509 13 H 0.068 0.932 14 C 0.014 3.986 15 N -0.830 5.830 16 Si 1.189 2.811 17 H -0.328 1.328 18 H -0.269 1.269 19 H -0.302 1.302 20 N -0.612 5.612 21 H 0.078 0.922 22 H 0.072 0.928 23 H 0.037 0.963 24 H 0.350 0.650 25 H 0.126 0.874 26 H 0.096 0.904 27 H 0.420 0.580 28 H 0.150 0.850 29 H 0.144 0.856 30 H 0.114 0.886 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.130 -8.123 -4.196 17.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.334 5.334 3 C -0.079 4.079 4 C 0.301 3.699 5 O -0.409 6.409 6 N -0.302 5.302 7 C 0.146 3.854 8 C -0.333 4.333 9 C -0.052 4.052 10 C -0.316 4.316 11 C 0.133 3.867 12 C -0.542 4.542 13 H 0.086 0.914 14 C -0.202 4.202 15 N -0.453 5.453 16 Si 1.022 2.978 17 H -0.262 1.262 18 H -0.196 1.196 19 H -0.231 1.231 20 N -0.338 5.338 21 H 0.097 0.903 22 H 0.091 0.909 23 H 0.056 0.944 24 H 0.169 0.831 25 H 0.144 0.856 26 H 0.113 0.887 27 H 0.258 0.742 28 H 0.167 0.833 29 H 0.162 0.838 30 H 0.132 0.868 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.266 -7.386 -2.631 18.057 hybrid contribution 2.358 -0.595 -1.686 2.960 sum -13.908 -7.980 -4.318 16.606 Atomic orbital electron populations 1.22284 0.84937 1.03159 1.01480 1.60070 1.09501 1.12003 1.51797 1.21872 0.87117 0.93155 1.05756 1.21540 0.91536 0.82318 0.74531 1.90600 1.71843 1.30710 1.47787 1.43434 1.03957 1.11406 1.71411 1.18497 0.84384 0.90833 0.91712 1.21884 0.95599 1.00794 1.14998 1.21353 0.93536 0.96923 0.93359 1.21770 0.99881 0.95894 1.14050 1.18449 0.86714 0.92979 0.88576 1.20739 0.96681 1.01868 1.34929 0.91371 1.28594 1.12299 0.89758 0.89584 1.70665 1.11358 1.27219 1.36030 0.81396 0.68536 0.71261 0.76628 1.26170 1.19630 1.23082 1.65928 1.08170 1.28922 1.30824 0.90308 0.90874 0.94414 0.83135 0.85591 0.88669 0.74239 0.83298 0.83834 0.86752 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.70 127.69 1.37 1.74 16 2 N -0.70 -13.63 6.48 -541.24 -3.51 -17.14 16 3 C 0.05 0.99 6.17 85.56 0.53 1.52 16 4 C 0.51 15.35 7.71 87.66 0.68 16.02 16 5 O -0.53 -19.83 13.00 -2.99 -0.04 -19.87 16 6 N -0.65 -22.31 5.41 -308.38 -1.67 -23.97 16 7 C 0.38 16.69 7.51 133.25 1.00 17.69 16 8 C -0.31 -13.29 8.83 22.72 0.20 -13.09 16 9 C -0.03 -1.16 10.15 22.40 0.23 -0.93 16 10 C -0.29 -13.94 9.83 22.87 0.22 -13.71 16 11 C 0.26 13.69 6.39 40.20 0.26 13.95 16 12 C -0.51 -28.68 9.58 23.47 0.22 -28.46 16 13 H 0.07 3.90 8.05 -2.91 -0.02 3.87 16 14 C 0.01 0.78 5.52 85.29 0.47 1.25 16 15 N -0.83 -46.33 13.65 21.84 0.30 -46.04 16 16 Si 1.19 56.53 25.53 68.60 1.75 58.28 16 17 H -0.33 -15.19 7.11 99.48 0.71 -14.48 16 18 H -0.27 -11.90 6.70 99.48 0.67 -11.24 16 19 H -0.30 -14.63 7.10 99.48 0.71 -13.93 16 20 N -0.61 -30.62 4.58 -186.37 -0.85 -31.47 16 21 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 22 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 23 H 0.04 0.37 8.14 -2.39 -0.02 0.35 16 24 H 0.35 6.98 8.51 -89.69 -0.76 6.22 16 25 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.42 12.03 8.83 -92.71 -0.82 11.21 16 28 H 0.15 6.17 5.34 -3.14 -0.02 6.15 16 29 H 0.14 4.89 8.06 -2.91 -0.02 4.86 16 30 H 0.11 5.09 8.06 -2.91 -0.02 5.07 16 31 H 0.28 15.20 8.72 -92.71 -0.81 14.39 16 Total: -1.00 -67.64 268.23 0.66 -66.98 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -0.50 Total: 17.26 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: 5.18 Total: -4.03 kcal Atomic # 7 Polarization: -112.89 SS G_CDS: -5.73 Total: -118.62 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.04 Total: -19.87 kcal Atomic # 14 Polarization: 56.53 SS G_CDS: 1.75 Total: 58.28 kcal Total: -67.64 0.66 -66.98 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337077960.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.287 kcal (2) G-P(sol) polarization free energy of solvation -67.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds