Wall clock time and date at job start Sun Mar 29 2020 22:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47132 * 2 1 4 4 C 1.50700 * 109.47139 * 119.99842 * 2 1 3 5 5 O 1.21300 * 119.99937 * 120.00077 * 4 2 1 6 6 N 1.34774 * 120.00030 * 300.27833 * 4 2 1 7 7 C 1.46501 * 120.00167 * 359.72225 * 6 4 2 8 8 C 1.37107 * 119.99942 * 179.72163 * 6 4 2 9 9 H 1.07997 * 119.99706 * 22.57458 * 8 6 4 10 10 C 1.38946 * 119.99741 * 202.57287 * 8 6 4 11 11 N 1.31417 * 120.00115 * 10.35781 * 10 8 6 12 12 Si 1.86800 * 119.99855 * 190.35167 * 10 8 6 13 13 H 1.48501 * 109.47224 * 90.00178 * 12 10 8 14 14 H 1.48506 * 109.47329 * 210.00578 * 12 10 8 15 15 H 1.48504 * 109.47183 * 330.00039 * 12 10 8 16 16 C 1.50697 * 109.47189 * 239.99911 * 2 1 3 17 17 C 1.38390 * 120.00247 * 324.72530 * 16 2 1 18 18 N 1.32122 * 119.99857 * 179.78102 * 17 16 2 19 19 C 1.32159 * 120.00256 * 0.49603 * 18 17 16 20 20 C 1.38348 * 119.99900 * 359.73567 * 19 18 17 21 21 N 1.32130 * 120.00292 * 145.00249 * 16 2 1 22 22 H 1.08996 * 109.47229 * 299.99922 * 1 2 3 23 23 H 1.09001 * 109.46891 * 60.00015 * 1 2 3 24 24 H 1.09001 * 109.46732 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47195 * 93.54577 * 7 6 4 26 26 H 1.09000 * 109.46921 * 213.54521 * 7 6 4 27 27 H 1.08999 * 109.46624 * 333.54749 * 7 6 4 28 28 H 0.97004 * 119.99322 * 179.97438 * 11 10 8 29 29 H 1.08000 * 119.99917 * 0.02562 * 17 16 2 30 30 H 1.07993 * 120.00134 * 179.71351 * 19 18 17 31 31 H 1.07994 * 119.99895 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7297 -1.6966 1.1192 6 7 1.7021 -0.2532 2.4545 7 6 0.8599 0.9379 2.5890 8 6 2.1545 -0.9028 3.5740 9 1 3.0347 -1.5260 3.5180 10 6 1.4804 -0.7593 4.7805 11 7 0.3044 -0.1734 4.8105 12 14 2.2456 -1.3993 6.3598 13 1 3.0705 -0.3307 6.9786 14 1 1.1714 -1.8036 7.3020 15 1 3.1033 -2.5724 6.0543 16 6 2.0323 -0.7104 -1.2304 17 6 1.3405 -1.7991 -1.7318 18 7 1.7787 -2.4192 -2.8131 19 6 2.8829 -2.0059 -3.4102 20 6 3.5771 -0.9206 -2.9062 21 7 3.1363 -0.2973 -1.8274 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.1836 0.6366 2.6807 26 1 1.1568 1.4944 3.4780 27 1 0.9798 1.5689 1.7083 28 1 -0.1662 -0.0736 5.6528 29 1 0.4404 -2.1393 -1.2415 30 1 3.2435 -2.5157 -4.2913 31 1 4.4792 -0.5826 -3.3943 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339358119.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:32 Heat of formation + Delta-G solvation = 26.447569 kcal Electronic energy + Delta-G solvation = -16525.348119 eV Core-core repulsion = 13807.782238 eV Total energy + Delta-G solvation = -2717.565881 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.90367 -38.64433 -34.86050 -34.28727 -33.54091 -31.59412 -29.69263 -26.31468 -25.40490 -24.38165 -24.13904 -22.13524 -19.01996 -17.35044 -16.92678 -16.80407 -16.03388 -15.46918 -14.72467 -14.35107 -14.18296 -13.90884 -13.59945 -12.84685 -12.73668 -12.03774 -11.85557 -11.52269 -11.35325 -11.20919 -11.09872 -10.96039 -10.87288 -10.63125 -10.34503 -10.27092 -9.05890 -9.00322 -8.79195 -8.36772 -7.71905 -6.33246 -3.90633 1.05860 1.42499 3.15406 3.24335 3.30008 3.81954 3.90112 4.15133 4.26389 4.51942 4.77115 4.91709 4.99409 5.09523 5.37391 5.38536 5.55592 5.64782 5.75393 5.87855 6.07772 6.19520 6.31914 6.49207 6.62398 6.85249 7.20541 7.54018 7.54855 8.05877 8.09901 8.45431 9.15572 9.38618 9.93453 10.69953 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.044633 B = 0.006621 C = 0.006236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.185248 B = 4227.662298 C = 4489.068618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.056 4.056 3 H 0.103 0.897 4 C 0.457 3.543 5 O -0.586 6.586 6 N -0.442 5.442 7 C 0.109 3.891 8 C -0.305 4.305 9 H 0.098 0.902 10 C 0.031 3.969 11 N -0.884 5.884 12 Si 0.928 3.072 13 H -0.278 1.278 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.131 3.869 17 C 0.066 3.934 18 N -0.440 5.440 19 C 0.029 3.971 20 C 0.049 3.951 21 N -0.436 5.436 22 H 0.089 0.911 23 H 0.058 0.942 24 H 0.062 0.938 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.030 0.970 28 H 0.268 0.732 29 H 0.167 0.833 30 H 0.164 0.836 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 2.808 -10.461 10.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.079 4.079 3 H 0.121 0.879 4 C 0.244 3.756 5 O -0.471 6.471 6 N -0.160 5.160 7 C -0.035 4.035 8 C -0.432 4.432 9 H 0.116 0.884 10 C -0.172 4.172 11 N -0.524 5.524 12 Si 0.754 3.246 13 H -0.204 1.204 14 H -0.209 1.209 15 H -0.194 1.194 16 C -0.010 4.010 17 C -0.095 4.095 18 N -0.155 5.155 19 C -0.130 4.130 20 C -0.110 4.110 21 N -0.151 5.151 22 H 0.107 0.893 23 H 0.077 0.923 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.048 0.952 28 H 0.078 0.922 29 H 0.185 0.815 30 H 0.181 0.819 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -0.227 2.375 -10.346 10.618 hybrid contribution 0.333 -0.202 0.866 0.950 sum 0.106 2.173 -9.480 9.727 Atomic orbital electron populations 1.22119 0.92370 1.03224 1.03586 1.20099 0.97066 1.00383 0.90357 0.87936 1.19606 0.86155 0.86221 0.83636 1.90542 1.42198 1.28268 1.86080 1.43495 1.44394 1.23929 1.04167 1.21703 0.95959 0.86951 0.98881 1.19673 1.10439 1.27554 0.85578 0.88406 1.25333 0.94956 0.97149 0.99751 1.69984 1.12015 1.43226 1.27129 0.85900 0.78584 0.79261 0.80823 1.20350 1.20884 1.19404 1.21700 0.90612 0.93762 0.94963 1.23534 1.00788 0.92513 0.92622 1.68414 1.12285 1.27175 1.07586 1.23630 0.92756 0.95999 1.00604 1.23665 1.00198 0.93996 0.93186 1.68207 1.10846 1.29313 1.06759 0.89279 0.92303 0.91869 0.91669 0.91416 0.95189 0.92224 0.81547 0.81862 0.81803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 8.24 37.16 0.31 -2.10 16 2 C -0.06 -1.05 2.25 -92.93 -0.21 -1.26 16 3 H 0.10 1.82 7.41 -51.93 -0.39 1.43 16 4 C 0.46 11.16 7.03 -10.99 -0.08 11.09 16 5 O -0.59 -16.60 15.73 5.54 0.09 -16.51 16 6 N -0.44 -11.19 3.02 -122.19 -0.37 -11.55 16 7 C 0.11 2.34 7.04 59.85 0.42 2.76 16 8 C -0.30 -8.48 9.29 -14.93 -0.14 -8.62 16 9 H 0.10 2.88 7.40 -52.49 -0.39 2.50 16 10 C 0.03 0.81 5.15 -17.47 -0.09 0.72 16 11 N -0.88 -23.04 10.55 55.50 0.59 -22.45 16 12 Si 0.93 20.74 29.56 -169.99 -5.03 15.72 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 16 C 0.13 2.43 5.03 -82.41 -0.41 2.02 16 17 C 0.07 1.15 10.33 -17.37 -0.18 0.97 16 18 N -0.44 -7.29 10.50 -13.06 -0.14 -7.43 16 19 C 0.03 0.40 11.23 -17.37 -0.19 0.21 16 20 C 0.05 0.70 11.22 -17.37 -0.20 0.51 16 21 N -0.44 -7.89 10.42 -9.29 -0.10 -7.98 16 22 H 0.09 1.41 4.57 -51.93 -0.24 1.17 16 23 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 24 H 0.06 0.98 6.52 -51.93 -0.34 0.64 16 25 H 0.07 1.43 6.49 -51.93 -0.34 1.09 16 26 H 0.07 1.55 7.13 -51.93 -0.37 1.18 16 27 H 0.03 0.53 5.75 -51.93 -0.30 0.23 16 28 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 29 H 0.17 2.68 6.34 -52.49 -0.33 2.34 16 30 H 0.16 1.55 8.06 -52.49 -0.42 1.13 16 31 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 262.07 15.07 3.95 3.95 Total: -1.00 -32.78 262.07 -4.87 -37.65 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.09 Total: 2.33 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -0.77 Total: 6.29 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.02 Total: -49.42 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.09 Total: -16.51 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.78 -4.87 -37.65 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339358119.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.097 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds