Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47289 * 239.99541 * 2 1 3 5 5 O 1.21295 * 120.00534 * 252.22628 * 4 2 1 6 6 N 1.34787 * 119.99774 * 72.22630 * 4 2 1 7 7 C 1.46499 * 119.99980 * 185.03319 * 6 4 2 8 8 C 1.37099 * 119.99889 * 5.02382 * 6 4 2 9 9 H 1.07995 * 120.00368 * 232.64483 * 8 6 4 10 10 C 1.38952 * 119.99638 * 52.64663 * 8 6 4 11 11 N 1.31411 * 119.99995 * 200.29743 * 10 8 6 12 12 Si 1.86801 * 119.99998 * 20.29905 * 10 8 6 13 13 H 1.48500 * 109.46876 * 95.15996 * 12 10 8 14 14 H 1.48503 * 109.47010 * 215.16025 * 12 10 8 15 15 H 1.48494 * 109.47444 * 335.15837 * 12 10 8 16 16 C 1.50704 * 109.47066 * 119.99882 * 2 1 3 17 17 C 1.38387 * 119.99811 * 35.02228 * 16 2 1 18 18 N 1.32129 * 119.99400 * 179.72312 * 17 16 2 19 19 C 1.32157 * 120.00044 * 0.51240 * 18 17 16 20 20 C 1.38342 * 119.99958 * 359.48766 * 19 18 17 21 21 N 1.32118 * 120.00096 * 215.00314 * 16 2 1 22 22 H 1.08999 * 109.46838 * 173.31232 * 1 2 3 23 23 H 1.08992 * 109.47172 * 293.31243 * 1 2 3 24 24 H 1.08996 * 109.46725 * 53.31485 * 1 2 3 25 25 H 1.09003 * 109.47464 * 84.84152 * 7 6 4 26 26 H 1.08995 * 109.46655 * 204.84490 * 7 6 4 27 27 H 1.08999 * 109.46773 * 324.83836 * 7 6 4 28 28 H 0.97000 * 120.00032 * 179.97438 * 11 10 8 29 29 H 1.08003 * 120.00578 * 359.97438 * 17 16 2 30 30 H 1.08001 * 119.99533 * 179.76986 * 19 18 17 31 31 H 1.07999 * 119.99882 * 180.28052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5369 -1.8092 -1.1329 6 7 1.9211 -0.1250 -2.4393 7 6 2.3074 -0.8588 -3.6470 8 6 1.4462 1.1573 -2.5388 9 1 0.6255 1.3790 -3.2048 10 6 2.0209 2.1716 -1.7827 11 7 1.3548 3.2819 -1.5583 12 14 3.7405 1.9569 -1.0853 13 1 4.7289 2.5723 -2.0071 14 1 3.8226 2.6182 0.2418 15 1 4.0371 0.5095 -0.9363 16 6 2.0324 -0.7104 1.2305 17 6 1.3376 -1.7958 1.7349 18 7 1.7811 -2.4220 2.8105 19 6 2.8825 -2.0055 3.4106 20 6 3.5769 -0.9204 2.9063 21 7 3.1362 -0.2972 1.8275 22 1 -0.3633 -1.0207 -0.1197 23 1 -0.3633 0.4067 0.9437 24 1 -0.3632 0.6139 -0.8241 25 1 1.4719 -1.4739 -3.9813 26 1 2.5748 -0.1515 -4.4319 27 1 3.1630 -1.4971 -3.4261 28 1 1.7558 3.9898 -1.0302 29 1 0.4352 -2.1336 1.2470 30 1 3.2429 -2.5151 4.2920 31 1 4.4795 -0.5829 3.3941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339358122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = 25.880461 kcal Electronic energy + Delta-G solvation = -17113.707822 eV Core-core repulsion = 14396.117349 eV Total energy + Delta-G solvation = -2717.590473 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.88164 -38.93030 -34.80316 -34.35727 -33.42135 -32.04385 -29.70882 -26.74609 -25.03052 -24.27827 -24.07850 -22.02255 -19.30157 -17.67954 -17.06778 -16.74103 -15.81650 -15.37991 -14.86484 -14.51149 -14.16745 -13.69613 -13.55744 -12.93272 -12.73523 -12.36042 -12.07217 -11.46348 -11.37879 -11.28866 -11.09181 -11.02533 -10.85158 -10.83413 -10.34871 -9.97764 -9.10917 -9.00327 -8.67951 -8.58001 -7.61680 -6.56698 -4.31898 1.10998 1.47643 3.15945 3.29699 3.37720 3.68739 3.93963 4.11925 4.28904 4.53233 4.65224 4.83512 4.85845 5.08349 5.48709 5.51113 5.71790 5.79316 5.95132 6.05201 6.23206 6.34869 6.41688 6.57067 6.60639 6.68323 6.92888 7.59096 7.62415 7.66171 8.12367 8.39217 8.89790 9.18342 9.63600 10.50971 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.011283 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.309863 B = 2481.032213 C = 2766.592520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.055 4.055 3 H 0.115 0.885 4 C 0.506 3.494 5 O -0.593 6.593 6 N -0.473 5.473 7 C 0.084 3.916 8 C -0.356 4.356 9 H 0.101 0.899 10 C 0.077 3.923 11 N -0.850 5.850 12 Si 0.852 3.148 13 H -0.280 1.280 14 H -0.271 1.271 15 H -0.251 1.251 16 C 0.123 3.877 17 C 0.069 3.931 18 N -0.441 5.441 19 C 0.029 3.971 20 C 0.048 3.952 21 N -0.439 5.439 22 H 0.052 0.948 23 H 0.055 0.945 24 H 0.097 0.903 25 H 0.040 0.960 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.277 0.723 29 H 0.168 0.832 30 H 0.164 0.836 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.541 -4.798 6.052 7.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.078 4.078 3 H 0.133 0.867 4 C 0.295 3.705 5 O -0.477 6.477 6 N -0.194 5.194 7 C -0.059 4.059 8 C -0.483 4.483 9 H 0.118 0.882 10 C -0.132 4.132 11 N -0.484 5.484 12 Si 0.676 3.324 13 H -0.207 1.207 14 H -0.196 1.196 15 H -0.175 1.175 16 C -0.018 4.018 17 C -0.092 4.092 18 N -0.155 5.155 19 C -0.130 4.130 20 C -0.111 4.111 21 N -0.153 5.153 22 H 0.071 0.929 23 H 0.074 0.926 24 H 0.115 0.885 25 H 0.058 0.942 26 H 0.085 0.915 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.185 0.815 30 H 0.182 0.818 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.775 -5.147 6.150 8.057 hybrid contribution 1.147 0.273 0.330 1.224 sum 1.922 -4.874 6.480 8.333 Atomic orbital electron populations 1.21654 0.91372 1.02127 1.03705 1.20141 0.98265 1.00939 0.88418 0.86747 1.20059 0.80395 0.85032 0.85043 1.90551 1.48248 1.21984 1.86929 1.43499 1.58440 1.13804 1.03666 1.21663 0.99000 0.96552 0.88649 1.18912 1.17511 0.81625 1.30291 0.88169 1.25597 0.97291 0.94873 0.95406 1.69730 1.36434 1.06779 1.35441 0.87164 0.85348 0.80870 0.78990 1.20651 1.19571 1.17482 1.21984 0.90640 0.93646 0.95543 1.23509 1.00584 0.92429 0.92633 1.68409 1.12158 1.27379 1.07555 1.23609 0.92843 0.96068 1.00484 1.23688 1.00255 0.93967 0.93238 1.68260 1.11325 1.28778 1.06986 0.92924 0.92605 0.88455 0.94189 0.91533 0.92921 0.91215 0.81466 0.81845 0.81860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.48 8.27 37.16 0.31 -2.17 16 2 C -0.06 -1.24 1.70 -92.92 -0.16 -1.40 16 3 H 0.11 2.79 3.30 -51.93 -0.17 2.62 16 4 C 0.51 12.41 4.48 -10.98 -0.05 12.36 16 5 O -0.59 -15.62 15.65 5.54 0.09 -15.53 16 6 N -0.47 -11.39 2.33 -122.19 -0.28 -11.67 16 7 C 0.08 1.74 10.39 59.85 0.62 2.36 16 8 C -0.36 -9.00 7.89 -14.93 -0.12 -9.12 16 9 H 0.10 2.63 8.06 -52.49 -0.42 2.21 16 10 C 0.08 2.00 4.02 -17.47 -0.07 1.93 16 11 N -0.85 -22.46 13.96 55.50 0.77 -21.69 16 12 Si 0.85 21.16 25.12 -169.99 -4.27 16.89 16 13 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 14 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 15 H -0.25 -6.64 5.70 56.52 0.32 -6.32 16 16 C 0.12 2.58 5.10 -82.41 -0.42 2.16 16 17 C 0.07 1.28 10.23 -17.37 -0.18 1.10 16 18 N -0.44 -7.63 10.50 -13.06 -0.14 -7.77 16 19 C 0.03 0.43 11.22 -17.37 -0.20 0.24 16 20 C 0.05 0.77 11.22 -17.37 -0.20 0.58 16 21 N -0.44 -9.10 10.42 -9.29 -0.10 -9.20 16 22 H 0.05 0.88 6.89 -51.93 -0.36 0.53 16 23 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 24 H 0.10 2.00 6.89 -51.93 -0.36 1.64 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 27 H 0.05 1.09 7.51 -51.93 -0.39 0.70 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.61 16 29 H 0.17 2.78 6.49 -52.48 -0.34 2.44 16 30 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 31 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 LS Contribution 260.27 15.07 3.92 3.92 Total: -1.00 -31.07 260.27 -3.82 -34.89 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -3.36 Total: 2.13 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: -0.45 Total: 8.03 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.26 Total: -50.33 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: 0.09 Total: -15.53 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -4.27 Total: 16.89 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.07 -3.82 -34.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339358122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.771 kcal (2) G-P(sol) polarization free energy of solvation -31.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds