Wall clock time and date at job start Sun Mar 29 2020 22:07:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47482 * 2 1 4 4 C 1.50699 * 109.47289 * 239.99541 * 2 1 3 5 5 O 1.21295 * 120.00534 * 252.22628 * 4 2 1 6 6 N 1.34787 * 119.99774 * 72.22630 * 4 2 1 7 7 C 1.46499 * 119.99980 * 185.03319 * 6 4 2 8 8 C 1.37099 * 119.99889 * 5.02382 * 6 4 2 9 9 H 1.07995 * 120.00368 * 232.64483 * 8 6 4 10 10 C 1.38952 * 119.99638 * 52.64663 * 8 6 4 11 11 N 1.31411 * 119.99995 * 200.29743 * 10 8 6 12 12 Si 1.86801 * 119.99998 * 20.29905 * 10 8 6 13 13 H 1.48500 * 109.46876 * 95.15996 * 12 10 8 14 14 H 1.48503 * 109.47010 * 215.16025 * 12 10 8 15 15 H 1.48494 * 109.47444 * 335.15837 * 12 10 8 16 16 C 1.50704 * 109.47066 * 119.99882 * 2 1 3 17 17 C 1.38387 * 119.99811 * 35.02228 * 16 2 1 18 18 N 1.32129 * 119.99400 * 179.72312 * 17 16 2 19 19 C 1.32157 * 120.00044 * 0.51240 * 18 17 16 20 20 C 1.38342 * 119.99958 * 359.48766 * 19 18 17 21 21 N 1.32118 * 120.00096 * 215.00314 * 16 2 1 22 22 H 1.08999 * 109.46838 * 173.31232 * 1 2 3 23 23 H 1.08992 * 109.47172 * 293.31243 * 1 2 3 24 24 H 1.08996 * 109.46725 * 53.31485 * 1 2 3 25 25 H 1.09003 * 109.47464 * 84.84152 * 7 6 4 26 26 H 1.08995 * 109.46655 * 204.84490 * 7 6 4 27 27 H 1.08999 * 109.46773 * 324.83836 * 7 6 4 28 28 H 0.97000 * 120.00032 * 179.97438 * 11 10 8 29 29 H 1.08003 * 120.00578 * 359.97438 * 17 16 2 30 30 H 1.08001 * 119.99533 * 179.76986 * 19 18 17 31 31 H 1.07999 * 119.99882 * 180.28052 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.5369 -1.8092 -1.1329 6 7 1.9211 -0.1250 -2.4393 7 6 2.3074 -0.8588 -3.6470 8 6 1.4462 1.1573 -2.5388 9 1 0.6255 1.3790 -3.2048 10 6 2.0209 2.1716 -1.7827 11 7 1.3548 3.2819 -1.5583 12 14 3.7405 1.9569 -1.0853 13 1 4.7289 2.5723 -2.0071 14 1 3.8226 2.6182 0.2418 15 1 4.0371 0.5095 -0.9363 16 6 2.0324 -0.7104 1.2305 17 6 1.3376 -1.7958 1.7349 18 7 1.7811 -2.4220 2.8105 19 6 2.8825 -2.0055 3.4106 20 6 3.5769 -0.9204 2.9063 21 7 3.1362 -0.2972 1.8275 22 1 -0.3633 -1.0207 -0.1197 23 1 -0.3633 0.4067 0.9437 24 1 -0.3632 0.6139 -0.8241 25 1 1.4719 -1.4739 -3.9813 26 1 2.5748 -0.1515 -4.4319 27 1 3.1630 -1.4971 -3.4261 28 1 1.7558 3.9898 -1.0302 29 1 0.4352 -2.1336 1.2470 30 1 3.2429 -2.5151 4.2920 31 1 4.4795 -0.5829 3.3941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339358122.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:35 Heat of formation + Delta-G solvation = 3.407323 kcal Electronic energy + Delta-G solvation = -17114.682330 eV Core-core repulsion = 14396.117349 eV Total energy + Delta-G solvation = -2718.564981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.27987 -40.71839 -36.73644 -35.84741 -34.86086 -34.00507 -31.10157 -28.49082 -26.68975 -25.97839 -25.43434 -23.58672 -21.16533 -19.45402 -18.51626 -18.03786 -17.51572 -17.19678 -16.58410 -16.04005 -15.88086 -15.42087 -15.01847 -14.75243 -14.47107 -13.97511 -13.66944 -13.09914 -13.09237 -12.94021 -12.80357 -12.62297 -12.57020 -12.26306 -12.19107 -11.90987 -11.06186 -10.66678 -10.16034 -10.03907 -9.54033 -8.59422 -6.33370 -0.19582 0.13615 1.17143 1.29101 1.37448 1.78618 2.11304 2.48525 2.78124 2.90124 3.12042 3.33206 3.55907 3.74690 4.06591 4.10447 4.27281 4.43885 4.45007 4.57070 4.66773 4.73288 4.87747 4.93652 4.99902 5.35959 5.40801 5.65668 5.76027 6.29191 6.38146 6.80296 6.91259 7.25184 7.72264 8.51688 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.011283 C = 0.010118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.309863 B = 2481.032213 C = 2766.592520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.056 4.056 3 H 0.091 0.909 4 C 0.501 3.499 5 O -0.615 6.615 6 N -0.483 5.483 7 C 0.080 3.920 8 C -0.347 4.347 9 H 0.089 0.911 10 C 0.062 3.938 11 N -0.871 5.871 12 Si 0.893 3.107 13 H -0.279 1.279 14 H -0.271 1.271 15 H -0.275 1.275 16 C 0.090 3.910 17 C 0.062 3.938 18 N -0.451 5.451 19 C 0.048 3.952 20 C 0.046 3.954 21 N -0.479 5.479 22 H 0.070 0.930 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.048 0.952 28 H 0.282 0.718 29 H 0.178 0.822 30 H 0.216 0.784 31 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.993 -5.688 7.457 9.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.078 4.078 3 H 0.109 0.891 4 C 0.290 3.710 5 O -0.501 6.501 6 N -0.204 5.204 7 C -0.062 4.062 8 C -0.475 4.475 9 H 0.106 0.894 10 C -0.145 4.145 11 N -0.506 5.506 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.196 1.196 15 H -0.200 1.200 16 C -0.049 4.049 17 C -0.096 4.096 18 N -0.166 5.166 19 C -0.112 4.112 20 C -0.114 4.114 21 N -0.195 5.195 22 H 0.089 0.911 23 H 0.093 0.907 24 H 0.095 0.905 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.067 0.933 28 H 0.092 0.908 29 H 0.195 0.805 30 H 0.232 0.768 31 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.198 -6.021 7.514 9.703 hybrid contribution 1.071 0.469 -0.017 1.169 sum 2.269 -5.552 7.497 9.601 Atomic orbital electron populations 1.21601 0.89527 1.03017 1.03890 1.20076 0.99869 0.99395 0.88496 0.89124 1.20508 0.79781 0.84882 0.85807 1.90513 1.49202 1.23047 1.87370 1.43686 1.58403 1.13609 1.04738 1.21810 0.99659 0.96894 0.87842 1.18762 1.17054 0.82064 1.29582 0.89382 1.25787 0.98269 0.94895 0.95597 1.69749 1.37095 1.07371 1.36432 0.86578 0.83964 0.79000 0.78599 1.20582 1.19601 1.19987 1.21800 0.91995 0.95202 0.95918 1.23582 1.00914 0.91918 0.93189 1.68508 1.13335 1.27410 1.07317 1.24450 0.91072 0.94932 1.00745 1.24434 1.01301 0.93799 0.91897 1.68167 1.11820 1.30530 1.08955 0.91063 0.90654 0.90499 0.92202 0.90000 0.93326 0.90786 0.80484 0.76765 0.77933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.61 8.27 71.98 0.59 -4.02 16 2 C -0.06 -2.50 1.70 -12.28 -0.02 -2.52 16 3 H 0.09 4.46 3.30 -2.39 -0.01 4.45 16 4 C 0.50 24.54 4.48 87.66 0.39 24.93 16 5 O -0.62 -32.41 15.65 -3.08 -0.05 -32.46 16 6 N -0.48 -23.20 2.33 -658.88 -1.54 -24.73 16 7 C 0.08 3.25 10.39 127.77 1.33 4.58 16 8 C -0.35 -17.56 7.89 84.04 0.66 -16.90 16 9 H 0.09 4.66 8.06 -2.91 -0.02 4.63 16 10 C 0.06 3.19 4.02 84.93 0.34 3.54 16 11 N -0.87 -46.10 13.96 21.66 0.30 -45.79 16 12 Si 0.89 44.06 25.12 68.60 1.72 45.78 16 13 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 14 H -0.27 -13.19 7.11 99.48 0.71 -12.49 16 15 H -0.27 -14.62 5.70 99.48 0.57 -14.06 16 16 C 0.09 3.72 5.10 42.55 0.22 3.94 16 17 C 0.06 2.23 10.23 84.68 0.87 3.10 16 18 N -0.45 -14.43 10.50 -195.22 -2.05 -16.48 16 19 C 0.05 1.24 11.22 84.67 0.95 2.19 16 20 C 0.05 1.34 11.22 84.67 0.95 2.29 16 21 N -0.48 -19.33 10.42 -183.30 -1.91 -21.24 16 22 H 0.07 2.35 6.89 -2.39 -0.02 2.33 16 23 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.08 3.18 6.89 -2.39 -0.02 3.16 16 25 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.08 3.01 8.00 -2.39 -0.02 2.99 16 27 H 0.05 1.99 7.51 -2.39 -0.02 1.97 16 28 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 29 H 0.18 5.70 6.49 -2.91 -0.02 5.68 16 30 H 0.22 3.16 8.06 -2.91 -0.02 3.14 16 31 H 0.20 4.01 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -66.64 260.27 3.77 -62.87 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: 1.00 Total: 10.93 kcal Atomic # 6 Polarization: 14.84 SS G_CDS: 6.28 Total: 21.12 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -5.19 Total: -108.24 kcal Atomic # 8 Polarization: -32.41 SS G_CDS: -0.05 Total: -32.46 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.72 Total: 45.78 kcal Total: -66.64 3.77 -62.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339358122.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.279 kcal (2) G-P(sol) polarization free energy of solvation -66.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds