Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31987 * 120.04896 * 2 1 4 4 C 1.32222 * 120.07406 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.16395 * 359.97438 * 4 3 2 6 6 N 1.32184 * 120.09744 * 0.02562 * 5 4 3 7 7 C 1.32630 * 119.92268 * 359.97438 * 6 5 4 8 8 N 1.39401 * 120.08408 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99811 * 0.02562 * 8 7 6 10 10 O 1.21277 * 119.99973 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99994 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47329 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47323 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00147 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00186 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99546 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46880 * 90.00409 * 17 15 13 19 19 H 1.48501 * 109.47211 * 210.00102 * 17 15 13 20 20 H 1.48503 * 109.47294 * 330.00234 * 17 15 13 21 21 H 1.08999 * 109.47232 * 270.02575 * 1 2 3 22 22 H 1.09002 * 109.46973 * 30.02344 * 1 2 3 23 23 H 1.09003 * 109.47139 * 150.02214 * 1 2 3 24 24 H 1.07996 * 119.91221 * 180.02562 * 4 3 2 25 25 H 1.08005 * 119.94915 * 180.28326 * 5 4 3 26 26 H 0.97001 * 120.00377 * 179.97438 * 8 7 6 27 27 H 1.09005 * 109.47009 * 299.99656 * 11 9 8 28 28 H 1.08996 * 109.47069 * 59.99973 * 11 9 8 29 29 H 1.08997 * 109.46904 * 300.00038 * 12 11 9 30 30 H 1.09004 * 109.47283 * 59.99331 * 12 11 9 31 31 H 0.97003 * 119.99727 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1425 0.0000 4 6 3.4901 1.1431 0.0005 5 6 4.1854 -0.0520 0.0016 6 7 3.5302 -1.2000 0.0016 7 6 2.2039 -1.2049 0.0011 8 7 1.5095 -2.4136 0.0016 9 6 2.1860 -3.5793 0.0032 10 8 3.3988 -3.5767 0.0037 11 6 1.4354 -4.8861 0.0044 12 6 2.4322 -6.0469 0.0067 13 6 1.6816 -7.3536 0.0085 14 1 0.6016 -7.3560 0.0084 15 6 2.3736 -8.5462 0.0102 16 7 3.6888 -8.5432 0.0108 17 14 1.4432 -10.1659 0.0132 18 1 1.1963 -10.5975 -1.3861 19 1 2.2482 -11.1980 0.7147 20 1 0.1454 -9.9901 0.7133 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.0283 2.0794 0.0009 25 1 5.2654 -0.0475 0.0066 26 1 0.5395 -2.4158 0.0016 27 1 0.8085 -4.9443 0.8942 28 1 0.8092 -4.9462 -0.8858 29 1 3.0593 -5.9889 -0.8829 30 1 3.0581 -5.9865 0.8970 31 1 4.1757 -9.3822 0.0116 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339400814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = 12.303196 kcal Electronic energy + Delta-G solvation = -15725.677066 eV Core-core repulsion = 13007.497839 eV Total energy + Delta-G solvation = -2718.179227 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.35325 -39.12211 -35.21278 -34.49098 -33.50336 -31.66631 -30.73713 -28.12812 -26.12134 -24.26947 -22.90892 -21.67064 -20.02336 -18.18588 -17.41942 -16.53677 -16.06084 -15.70779 -15.43593 -14.62208 -14.55612 -14.38304 -13.48864 -13.10315 -12.96574 -12.57439 -12.43138 -12.22686 -11.44210 -11.33625 -11.22378 -10.95209 -10.63586 -10.37464 -10.02788 -9.77923 -9.58772 -9.15971 -8.67892 -8.37262 -8.29898 -5.99451 -4.04464 0.76303 1.19231 2.92677 3.07525 3.31507 3.37843 3.40152 3.79992 4.04143 4.27588 4.33707 4.45751 4.92876 5.02810 5.20063 5.29971 5.35689 5.39881 5.46242 5.74575 6.07663 6.09912 6.10246 6.54604 6.75362 7.16323 7.48342 7.69573 7.79017 7.93650 8.01792 8.32374 8.58128 9.03454 9.59431 11.11450 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.056475 B = 0.004685 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.673645 B = 5975.508605 C = 6445.433355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.037 3.963 3 N -0.417 5.417 4 C 0.001 3.999 5 C 0.082 3.918 6 N -0.432 5.432 7 C 0.327 3.673 8 N -0.663 5.663 9 C 0.495 3.505 10 O -0.462 6.462 11 C -0.127 4.127 12 C 0.036 3.964 13 C -0.529 4.529 14 H 0.057 0.943 15 C 0.059 3.941 16 N -0.889 5.889 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.286 1.286 20 H -0.274 1.274 21 H 0.082 0.918 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.167 0.833 25 H 0.170 0.830 26 H 0.416 0.584 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 17.789 0.002 18.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.110 4.110 3 N -0.131 5.131 4 C -0.159 4.159 5 C -0.079 4.079 6 N -0.153 5.153 7 C 0.091 3.909 8 N -0.312 5.312 9 C 0.282 3.718 10 O -0.329 6.329 11 C -0.167 4.167 12 C -0.002 4.002 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.143 4.143 16 N -0.527 5.527 17 Si 0.722 3.278 18 H -0.206 1.206 19 H -0.212 1.212 20 H -0.199 1.199 21 H 0.100 0.900 22 H 0.102 0.898 23 H 0.092 0.908 24 H 0.184 0.816 25 H 0.187 0.813 26 H 0.255 0.745 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.043 0.957 30 H 0.043 0.957 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.050 17.496 0.008 18.210 hybrid contribution -0.764 -0.847 -0.009 1.140 sum -5.814 16.649 -0.001 17.635 Atomic orbital electron populations 1.20627 0.87873 1.03727 1.03422 1.21703 0.98013 0.87848 1.03474 1.68129 1.09204 1.27840 1.07972 1.23500 0.90550 0.99796 1.02099 1.23761 1.01925 0.87773 0.94446 1.68609 1.06045 1.29038 1.11560 1.19476 0.89939 0.87126 0.94335 1.44287 1.10655 1.03531 1.72744 1.22064 0.89268 0.85066 0.75356 1.90786 1.13719 1.86337 1.42011 1.21940 1.00925 0.90920 1.02908 1.18930 0.93114 0.89286 0.98823 1.21180 0.92938 0.90870 1.51734 0.92508 1.25026 0.94824 0.99275 0.95200 1.70000 1.06008 1.26750 1.49942 0.86574 0.79739 0.83446 0.78088 1.20646 1.21200 1.19856 0.89990 0.89786 0.90808 0.81569 0.81281 0.74546 0.89756 0.89767 0.95669 0.95661 0.92884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.82 9.76 36.01 0.35 -0.47 16 2 C 0.04 0.46 6.81 -82.17 -0.56 -0.10 16 3 N -0.42 -5.28 10.42 -9.13 -0.10 -5.37 16 4 C 0.00 0.01 11.21 -17.38 -0.19 -0.19 16 5 C 0.08 1.06 11.22 -17.39 -0.20 0.87 16 6 N -0.43 -7.48 8.05 -12.17 -0.10 -7.57 16 7 C 0.33 5.00 7.41 -154.41 -1.14 3.86 16 8 N -0.66 -9.67 5.30 -11.33 -0.06 -9.73 16 9 C 0.49 9.52 7.79 -10.98 -0.09 9.43 16 10 O -0.46 -11.02 14.25 5.56 0.08 -10.94 16 11 C -0.13 -2.47 5.64 -27.88 -0.16 -2.63 16 12 C 0.04 0.95 4.26 -27.89 -0.12 0.83 16 13 C -0.53 -14.74 9.11 -34.44 -0.31 -15.06 16 14 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 15 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 16 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 17 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 21 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 23 H 0.07 0.49 6.56 -51.93 -0.34 0.14 16 24 H 0.17 1.22 8.06 -52.49 -0.42 0.80 16 25 H 0.17 1.66 8.06 -52.48 -0.42 1.24 16 26 H 0.42 4.24 6.70 -40.82 -0.27 3.97 16 27 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 28 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.02 0.73 8.10 -51.93 -0.42 0.31 16 31 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 275.02 15.07 4.14 4.14 Total: -1.00 -36.15 275.02 -6.36 -42.51 By element: Atomic # 1 Polarization: 2.42 SS G_CDS: -3.53 Total: -1.11 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: -2.52 Total: -1.86 kcal Atomic # 7 Polarization: -49.63 SS G_CDS: 0.48 Total: -49.15 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.08 Total: -10.94 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -36.15 -6.36 -42.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339400814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.817 kcal (2) G-P(sol) polarization free energy of solvation -36.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds