Wall clock time and date at job start Sun Mar 29 2020 21:35:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31987 * 120.04896 * 2 1 4 4 C 1.32222 * 120.07406 * 179.97438 * 3 2 1 5 5 C 1.38256 * 120.16395 * 359.97438 * 4 3 2 6 6 N 1.32184 * 120.09744 * 0.02562 * 5 4 3 7 7 C 1.32630 * 119.92268 * 359.97438 * 6 5 4 8 8 N 1.39401 * 120.08408 * 180.02562 * 7 6 5 9 9 C 1.34777 * 119.99811 * 0.02562 * 8 7 6 10 10 O 1.21277 * 119.99973 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99994 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47329 * 180.02562 * 11 9 8 13 13 C 1.50693 * 109.47323 * 179.97438 * 12 11 9 14 14 H 1.07995 * 120.00147 * 359.97438 * 13 12 11 15 15 C 1.37882 * 120.00186 * 179.97438 * 13 12 11 16 16 N 1.31520 * 119.99546 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00165 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46880 * 90.00409 * 17 15 13 19 19 H 1.48501 * 109.47211 * 210.00102 * 17 15 13 20 20 H 1.48503 * 109.47294 * 330.00234 * 17 15 13 21 21 H 1.08999 * 109.47232 * 270.02575 * 1 2 3 22 22 H 1.09002 * 109.46973 * 30.02344 * 1 2 3 23 23 H 1.09003 * 109.47139 * 150.02214 * 1 2 3 24 24 H 1.07996 * 119.91221 * 180.02562 * 4 3 2 25 25 H 1.08005 * 119.94915 * 180.28326 * 5 4 3 26 26 H 0.97001 * 120.00377 * 179.97438 * 8 7 6 27 27 H 1.09005 * 109.47009 * 299.99656 * 11 9 8 28 28 H 1.08996 * 109.47069 * 59.99973 * 11 9 8 29 29 H 1.08997 * 109.46904 * 300.00038 * 12 11 9 30 30 H 1.09004 * 109.47283 * 59.99331 * 12 11 9 31 31 H 0.97003 * 119.99727 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1679 1.1425 0.0000 4 6 3.4901 1.1431 0.0005 5 6 4.1854 -0.0520 0.0016 6 7 3.5302 -1.2000 0.0016 7 6 2.2039 -1.2049 0.0011 8 7 1.5095 -2.4136 0.0016 9 6 2.1860 -3.5793 0.0032 10 8 3.3988 -3.5767 0.0037 11 6 1.4354 -4.8861 0.0044 12 6 2.4322 -6.0469 0.0067 13 6 1.6816 -7.3536 0.0085 14 1 0.6016 -7.3560 0.0084 15 6 2.3736 -8.5462 0.0102 16 7 3.6888 -8.5432 0.0108 17 14 1.4432 -10.1659 0.0132 18 1 1.1963 -10.5975 -1.3861 19 1 2.2482 -11.1980 0.7147 20 1 0.1454 -9.9901 0.7133 21 1 -0.3633 0.0005 1.0276 22 1 -0.3633 0.8898 -0.5142 23 1 -0.3633 -0.8902 -0.5135 24 1 4.0283 2.0794 0.0009 25 1 5.2654 -0.0475 0.0066 26 1 0.5395 -2.4158 0.0016 27 1 0.8085 -4.9443 0.8942 28 1 0.8092 -4.9462 -0.8858 29 1 3.0593 -5.9889 -0.8829 30 1 3.0581 -5.9865 0.8970 31 1 4.1757 -9.3822 0.0116 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339400814.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:20 Heat of formation + Delta-G solvation = -14.230514 kcal Electronic energy + Delta-G solvation = -15726.827654 eV Core-core repulsion = 13007.497839 eV Total energy + Delta-G solvation = -2719.329815 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.42087 -40.52237 -36.49871 -35.62398 -35.41538 -33.22407 -32.18339 -29.02727 -27.92626 -25.64431 -23.87868 -23.40126 -21.45842 -19.42617 -18.83809 -18.26895 -17.00231 -16.95842 -16.91839 -16.45130 -15.93098 -15.48028 -15.02670 -14.34642 -14.22263 -13.76239 -13.73406 -13.30524 -13.09776 -12.83605 -12.53181 -12.50070 -12.43260 -11.92653 -11.64517 -11.49737 -11.31367 -11.08010 -10.56354 -9.85206 -9.37060 -8.17742 -6.31928 -0.23451 0.16084 1.43394 1.46060 1.56871 1.66219 1.76768 2.43613 2.77834 3.15872 3.21733 3.24205 3.37224 3.94370 4.13236 4.19473 4.41329 4.48388 4.52925 4.68868 4.75692 4.99295 5.07151 5.19123 5.48339 5.53158 5.61074 5.84692 6.04268 6.16390 6.45525 6.85377 6.87947 7.24261 7.38679 8.95032 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.056475 B = 0.004685 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.673645 B = 5975.508605 C = 6445.433355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.050 3.950 3 N -0.431 5.431 4 C 0.022 3.978 5 C 0.063 3.937 6 N -0.485 5.485 7 C 0.292 3.708 8 N -0.643 5.643 9 C 0.500 3.500 10 O -0.522 6.522 11 C -0.114 4.114 12 C 0.040 3.960 13 C -0.542 4.542 14 H 0.080 0.920 15 C -0.007 4.007 16 N -0.939 5.939 17 Si 0.974 3.026 18 H -0.272 1.272 19 H -0.288 1.288 20 H -0.253 1.253 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.092 0.908 24 H 0.208 0.792 25 H 0.190 0.810 26 H 0.437 0.563 27 H 0.114 0.886 28 H 0.114 0.886 29 H -0.018 1.018 30 H -0.018 1.018 31 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.911 18.937 0.020 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.096 4.096 3 N -0.146 5.146 4 C -0.138 4.138 5 C -0.097 4.097 6 N -0.206 5.206 7 C 0.058 3.942 8 N -0.294 5.294 9 C 0.288 3.712 10 O -0.394 6.394 11 C -0.154 4.154 12 C 0.003 3.997 13 C -0.579 4.579 14 H 0.098 0.902 15 C -0.205 4.205 16 N -0.579 5.579 17 Si 0.798 3.202 18 H -0.198 1.198 19 H -0.214 1.214 20 H -0.177 1.177 21 H 0.118 0.882 22 H 0.113 0.887 23 H 0.111 0.889 24 H 0.225 0.775 25 H 0.207 0.793 26 H 0.280 0.720 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.000 1.000 30 H 0.001 0.999 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.929 18.707 0.026 20.318 hybrid contribution 0.165 -1.028 -0.014 1.041 sum -7.764 17.679 0.011 19.309 Atomic orbital electron populations 1.20821 0.84762 1.05223 1.04947 1.22259 0.99871 0.86587 1.00880 1.68311 1.09855 1.27615 1.08861 1.24135 0.90317 1.00665 0.98706 1.24196 1.03085 0.87437 0.94952 1.68452 1.07804 1.31687 1.12643 1.19695 0.89849 0.87834 0.96827 1.43766 1.11461 1.02304 1.71882 1.21890 0.88444 0.86276 0.74570 1.90768 1.16097 1.87300 1.45203 1.21697 0.99359 0.88610 1.05701 1.18710 0.93728 0.92500 0.94782 1.21706 0.94140 0.91372 1.50729 0.90194 1.26146 0.95662 1.04016 0.94637 1.70190 1.08321 1.27870 1.51514 0.85312 0.78711 0.77675 0.78488 1.19759 1.21410 1.17685 0.88247 0.88670 0.88947 0.77514 0.79284 0.72038 0.86823 0.86809 0.99952 0.99939 0.92913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.33 9.76 71.24 0.69 -0.63 16 2 C 0.05 1.15 6.81 42.76 0.29 1.44 16 3 N -0.43 -9.90 10.42 -182.80 -1.90 -11.80 16 4 C 0.02 0.43 11.21 84.64 0.95 1.38 16 5 C 0.06 1.61 11.22 84.64 0.95 2.56 16 6 N -0.49 -17.10 8.05 -192.42 -1.55 -18.65 16 7 C 0.29 8.77 7.41 132.87 0.98 9.76 16 8 N -0.64 -18.13 5.30 -308.14 -1.63 -19.76 16 9 C 0.50 19.53 7.79 87.66 0.68 20.21 16 10 O -0.52 -26.32 14.25 -3.02 -0.04 -26.37 16 11 C -0.11 -4.37 5.64 29.85 0.17 -4.21 16 12 C 0.04 2.22 4.26 29.85 0.13 2.35 16 13 C -0.54 -30.27 9.11 25.60 0.23 -30.03 16 14 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 15 C -0.01 -0.42 5.46 84.65 0.46 0.05 16 16 N -0.94 -59.56 13.29 21.45 0.28 -59.28 16 17 Si 0.97 43.82 29.54 68.60 2.03 45.85 16 18 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 19 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 20 H -0.25 -10.47 7.11 99.48 0.71 -9.77 16 21 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 22 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 23 H 0.09 0.88 6.56 -2.39 -0.02 0.86 16 24 H 0.21 2.29 8.06 -2.91 -0.02 2.27 16 25 H 0.19 3.67 8.06 -2.91 -0.02 3.65 16 26 H 0.44 7.82 6.70 -92.71 -0.62 7.20 16 27 H 0.11 3.69 8.14 -2.38 -0.02 3.67 16 28 H 0.11 3.69 8.14 -2.39 -0.02 3.67 16 29 H -0.02 -1.13 8.10 -2.39 -0.02 -1.14 16 30 H -0.02 -1.12 8.10 -2.39 -0.02 -1.14 16 31 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -83.53 275.02 3.25 -80.27 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: 0.53 Total: 6.86 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 5.54 Total: 2.88 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.80 Total: -109.49 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.04 Total: -26.37 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -83.53 3.25 -80.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339400814.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.044 kcal (2) G-P(sol) polarization free energy of solvation -83.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds