Wall clock time and date at job start Sun Mar 29 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37092 * 120.00015 * 2 1 4 4 H 1.07995 * 120.00206 * 202.40511 * 3 2 1 5 5 C 1.38958 * 120.00217 * 22.40332 * 3 2 1 6 6 N 1.31410 * 119.99547 * 11.59475 * 5 3 2 7 7 Si 1.86797 * 119.99921 * 191.60021 * 5 3 2 8 8 H 1.48492 * 109.47583 * 59.99830 * 7 5 3 9 9 H 1.48500 * 109.47083 * 180.02562 * 7 5 3 10 10 H 1.48505 * 109.46964 * 299.99240 * 7 5 3 11 11 C 1.34778 * 119.99789 * 179.97438 * 2 1 3 12 12 O 1.21291 * 119.99343 * 180.02562 * 11 2 1 13 13 C 1.50703 * 120.00151 * 0.02562 * 11 2 1 14 14 C 1.52991 * 109.46871 * 179.97438 * 13 11 2 15 15 C 1.50703 * 109.46871 * 179.97438 * 14 13 11 16 16 C 1.38599 * 120.80074 * 90.00291 * 15 14 13 17 17 N 1.32331 * 119.10085 * 179.97438 * 16 15 14 18 18 C 1.31789 * 120.82375 * 359.97438 * 17 16 15 19 19 N 1.31802 * 121.75515 * 359.97438 * 18 17 16 20 20 C 1.32335 * 120.81378 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47526 * 272.16417 * 1 2 3 22 22 H 1.09002 * 109.46954 * 32.16499 * 1 2 3 23 23 H 1.09003 * 109.47099 * 152.15883 * 1 2 3 24 24 H 0.97007 * 119.99490 * 179.97438 * 6 5 3 25 25 H 1.09003 * 109.46887 * 59.99801 * 13 11 2 26 26 H 1.08996 * 109.46572 * 299.99692 * 13 11 2 27 27 H 1.09003 * 109.47140 * 60.00430 * 14 13 11 28 28 H 1.08996 * 109.47552 * 300.00047 * 14 13 11 29 29 H 1.07997 * 120.44407 * 359.95815 * 16 15 14 30 30 H 1.08001 * 119.12449 * 179.71790 * 18 17 16 31 31 H 1.07997 * 120.44237 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1693 1.2226 -0.3565 5 6 1.5344 2.3453 0.4586 6 7 0.3896 2.2707 1.0994 7 14 2.3336 4.0078 0.1642 8 1 2.4815 4.2343 -1.2959 9 1 1.4831 5.0761 0.7477 10 1 3.6718 4.0346 0.8074 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 6 2.3796 -3.6352 0.0005 15 6 1.6261 -4.9403 0.0012 16 6 1.2708 -5.5553 -1.1890 17 7 0.6099 -6.7010 -1.1492 18 6 0.2904 -7.2567 0.0023 19 7 0.6124 -6.7013 1.1534 20 6 1.2734 -5.5555 1.1920 21 1 -0.3634 0.0388 1.0269 22 1 -0.3633 0.8700 -0.5471 23 1 -0.3633 -0.9087 -0.4800 24 1 -0.0403 3.0791 1.4199 25 1 0.7590 -2.5302 -0.8897 26 1 0.7585 -2.5298 0.8903 27 1 3.0062 -3.5774 0.8906 28 1 3.0063 -3.5775 -0.8894 29 1 1.5297 -5.1053 -2.1361 30 1 -0.2533 -8.1898 0.0028 31 1 1.5338 -5.1056 2.1386 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347648672.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:03 Heat of formation + Delta-G solvation = -7.140812 kcal Electronic energy + Delta-G solvation = -15840.256740 eV Core-core repulsion = 13121.234358 eV Total energy + Delta-G solvation = -2719.022382 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.96060 -40.34701 -36.79665 -35.57606 -34.63520 -33.63268 -31.24581 -28.28653 -26.96874 -25.56223 -25.51877 -23.01763 -20.47362 -18.87658 -18.54067 -18.51911 -17.91014 -16.68075 -16.32451 -15.97755 -15.60940 -15.07812 -14.60395 -14.53400 -14.40038 -14.21110 -13.49701 -13.26554 -13.16411 -12.98939 -12.63293 -12.32693 -12.14443 -12.00483 -11.77556 -11.77066 -11.00802 -10.49566 -10.18592 -10.17876 -9.67853 -8.31773 -5.97250 -0.06091 0.10429 1.39766 1.41721 1.51976 2.05639 2.28783 2.79883 3.09812 3.11489 3.30342 3.30745 3.70050 3.77769 3.88341 4.15275 4.31921 4.38652 4.54557 4.62956 4.80980 4.84101 5.04948 5.19114 5.21663 5.40498 5.45532 5.47735 5.98923 6.10827 6.49329 7.10896 7.18407 7.50586 8.05504 8.69592 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.059278 B = 0.004849 C = 0.004722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.237495 B = 5772.635430 C = 5928.156735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.467 5.467 3 C -0.345 4.345 4 H 0.072 0.928 5 C -0.003 4.003 6 N -0.899 5.899 7 Si 0.988 3.012 8 H -0.268 1.268 9 H -0.271 1.271 10 H -0.277 1.277 11 C 0.436 3.564 12 O -0.633 6.633 13 C -0.110 4.110 14 C -0.042 4.042 15 C -0.176 4.176 16 C 0.147 3.853 17 N -0.535 5.535 18 C 0.276 3.724 19 N -0.535 5.535 20 C 0.144 3.856 21 H 0.045 0.955 22 H 0.050 0.950 23 H 0.069 0.931 24 H 0.272 0.728 25 H 0.100 0.900 26 H 0.093 0.907 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.186 0.814 30 H 0.221 0.779 31 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.448 -12.375 -2.251 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.185 5.185 3 C -0.473 4.473 4 H 0.090 0.910 5 C -0.204 4.204 6 N -0.538 5.538 7 Si 0.811 3.189 8 H -0.192 1.192 9 H -0.196 1.196 10 H -0.202 1.202 11 C 0.226 3.774 12 O -0.521 6.521 13 C -0.150 4.150 14 C -0.081 4.081 15 C -0.180 4.180 16 C -0.019 4.019 17 N -0.248 5.248 18 C -0.011 4.011 19 N -0.249 5.249 20 C -0.021 4.021 21 H 0.064 0.936 22 H 0.069 0.931 23 H 0.088 0.912 24 H 0.082 0.918 25 H 0.118 0.882 26 H 0.111 0.889 27 H 0.094 0.906 28 H 0.098 0.902 29 H 0.203 0.797 30 H 0.238 0.762 31 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -3.555 -13.095 -2.160 13.740 hybrid contribution 0.749 1.875 0.088 2.021 sum -2.806 -11.221 -2.072 11.750 Atomic orbital electron populations 1.21439 0.79427 1.00091 1.01111 1.43895 1.06752 1.04883 1.63010 1.19599 0.99236 0.85972 1.42533 0.90976 1.26066 0.96979 1.02822 0.94579 1.70067 1.17926 1.30401 1.35358 0.85079 0.77972 0.76940 0.78862 1.19248 1.19583 1.20207 1.21095 0.87987 0.86364 0.81931 1.90479 1.16078 1.88114 1.57391 1.21457 0.98557 0.90325 1.04622 1.20017 0.95883 0.87735 1.04496 1.21653 1.01471 0.99050 0.95856 1.23541 0.89562 0.89592 0.99182 1.68499 1.13359 1.11401 1.31532 1.25532 0.93560 0.99561 0.82430 1.68503 1.13318 1.11399 1.31670 1.23514 0.89695 0.89665 0.99217 0.93636 0.93127 0.91247 0.91787 0.88154 0.88858 0.90627 0.90158 0.79735 0.76234 0.80131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.26 8.52 127.77 1.09 6.35 16 2 N -0.47 -23.57 3.02 -658.87 -1.99 -25.56 16 3 C -0.35 -19.46 9.29 84.04 0.78 -18.68 16 4 H 0.07 4.33 7.41 -2.91 -0.02 4.31 16 5 C 0.00 -0.15 5.11 84.93 0.43 0.28 16 6 N -0.90 -47.35 10.62 21.67 0.23 -47.12 16 7 Si 0.99 42.19 29.57 68.60 2.03 44.22 16 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 9 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 10 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 11 C 0.44 20.23 7.63 87.66 0.67 20.90 16 12 O -0.63 -34.16 15.67 -3.06 -0.05 -34.21 16 13 C -0.11 -3.47 4.20 29.85 0.13 -3.34 16 14 C -0.04 -1.15 4.68 29.85 0.14 -1.01 16 15 C -0.18 -4.05 5.17 -19.69 -0.10 -4.15 16 16 C 0.15 3.20 11.01 84.70 0.93 4.14 16 17 N -0.53 -12.22 10.44 -200.05 -2.09 -14.31 16 18 C 0.28 5.77 12.29 180.88 2.22 7.99 16 19 N -0.54 -12.52 10.44 -200.04 -2.09 -14.61 16 20 C 0.14 3.27 11.01 84.70 0.93 4.20 16 21 H 0.05 2.04 7.54 -2.39 -0.02 2.02 16 22 H 0.05 2.32 7.06 -2.39 -0.02 2.30 16 23 H 0.07 2.32 6.36 -2.39 -0.02 2.30 16 24 H 0.27 13.51 8.31 -92.70 -0.77 12.74 16 25 H 0.10 2.73 7.41 -2.39 -0.02 2.71 16 26 H 0.09 2.73 8.11 -2.39 -0.02 2.71 16 27 H 0.08 2.21 8.06 -2.39 -0.02 2.19 16 28 H 0.08 2.27 8.06 -2.39 -0.02 2.25 16 29 H 0.19 3.22 8.06 -2.91 -0.02 3.20 16 30 H 0.22 2.99 8.06 -2.91 -0.02 2.97 16 31 H 0.18 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -68.02 272.47 4.40 -63.62 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 1.13 Total: 11.30 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: 7.22 Total: 16.66 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -5.93 Total: -101.60 kcal Atomic # 8 Polarization: -34.16 SS G_CDS: -0.05 Total: -34.21 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.02 4.40 -63.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347648672.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.479 kcal (2) G-P(sol) polarization free energy of solvation -68.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds