Wall clock time and date at job start Sun Mar 29 2020 21:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38388 * 120.00538 * 2 1 4 4 N 1.32121 * 119.99822 * 180.02562 * 3 2 1 5 5 C 1.32155 * 120.00178 * 359.97438 * 4 3 2 6 6 C 1.38343 * 120.00123 * 0.02562 * 5 4 3 7 7 C 1.50696 * 119.99435 * 179.97438 * 6 5 4 8 8 C 1.52998 * 109.46969 * 85.00447 * 7 6 5 9 9 N 1.46506 * 109.47237 * 179.97438 * 8 7 6 10 10 C 1.34773 * 119.99969 * 179.72043 * 9 8 7 11 11 O 1.21689 * 120.00158 * 0.02562 * 10 9 8 12 12 C 1.46376 * 120.00038 * 179.97438 * 10 9 8 13 13 H 1.08004 * 119.99999 * 0.02562 * 12 10 9 14 14 C 1.40047 * 120.00289 * 180.02562 * 12 10 9 15 15 N 1.30676 * 119.99832 * 0.02562 * 14 12 10 16 16 Si 1.86800 * 119.99995 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47347 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46833 * 120.00335 * 16 14 12 19 19 H 1.48497 * 109.46998 * 239.99685 * 16 14 12 20 20 N 1.32128 * 119.99882 * 180.24982 * 2 1 3 21 21 H 1.09007 * 109.46740 * 90.00219 * 1 2 3 22 22 H 1.09001 * 109.47541 * 209.99780 * 1 2 3 23 23 H 1.08994 * 109.46934 * 330.00664 * 1 2 3 24 24 H 1.08002 * 119.99395 * 0.02562 * 3 2 1 25 25 H 1.08000 * 119.99468 * 180.02562 * 5 4 3 26 26 H 1.09000 * 109.47664 * 325.00376 * 7 6 5 27 27 H 1.09002 * 109.46824 * 204.99847 * 7 6 5 28 28 H 1.09001 * 109.47671 * 59.99812 * 8 7 6 29 29 H 1.08998 * 109.47454 * 299.99809 * 8 7 6 30 30 H 0.97005 * 119.99811 * 0.02562 * 9 8 7 31 31 H 0.97000 * 119.99487 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1990 1.1984 0.0000 4 7 3.5202 1.1982 -0.0005 5 6 4.1809 0.0537 -0.0005 6 6 3.4891 -1.1443 -0.0005 7 6 4.2426 -2.4494 -0.0011 8 6 4.6069 -2.8285 1.4357 9 7 5.3390 -4.0976 1.4352 10 6 5.7692 -4.6278 2.5972 11 8 5.5492 -4.0526 3.6468 12 6 6.5001 -5.8960 2.5969 13 1 6.6950 -6.4067 1.6654 14 6 6.9467 -6.4472 3.8043 15 7 6.7104 -5.8296 4.9314 16 14 7.8800 -8.0653 3.8037 17 1 8.0163 -8.5577 2.4093 18 1 9.2290 -7.8588 4.3893 19 1 7.1374 -9.0654 4.6120 20 7 2.1676 -1.1443 -0.0050 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5137 24 1 1.6590 2.1337 0.0004 25 1 5.2609 0.0537 -0.0005 26 1 5.1531 -2.3431 -0.5908 27 1 3.6175 -3.2296 -0.4353 28 1 3.6965 -2.9349 2.0255 29 1 5.2320 -2.0483 1.8700 30 1 5.5179 -4.5540 0.5982 31 1 7.0195 -6.2117 5.7678 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347864983.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:52 Heat of formation + Delta-G solvation = -5.782459 kcal Electronic energy + Delta-G solvation = -15441.432854 eV Core-core repulsion = 12722.469375 eV Total energy + Delta-G solvation = -2718.963480 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.19454 -37.39357 -35.01149 -34.46972 -32.85728 -32.19078 -29.68494 -27.82680 -26.29057 -24.15627 -23.14928 -21.42131 -19.70312 -17.77414 -17.21270 -16.90159 -15.50929 -15.30766 -14.91303 -14.32522 -14.27466 -13.93547 -13.42534 -13.07416 -12.70651 -12.45542 -12.31875 -12.13055 -11.67123 -11.57257 -11.12806 -11.11176 -10.85882 -10.68633 -10.45655 -10.19083 -9.10540 -9.08462 -8.85398 -7.61842 -7.52629 -6.18179 -4.63662 0.70234 1.09563 3.13799 3.21801 3.26351 3.57755 3.85207 4.11868 4.21471 4.36927 4.59698 4.60903 4.86456 5.05029 5.23527 5.30559 5.32972 5.38366 5.48711 5.59819 5.77532 5.82554 5.87874 6.33908 6.48293 6.53218 7.25164 7.44188 7.75947 7.92463 8.07333 8.32925 9.03107 9.52998 10.60520 10.78843 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.056723 B = 0.004226 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.504567 B = 6624.013373 C = 6673.030874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.081 3.919 3 C 0.036 3.964 4 N -0.434 5.434 5 C 0.046 3.954 6 C 0.104 3.896 7 C -0.080 4.080 8 C 0.143 3.857 9 N -0.767 5.767 10 C 0.554 3.446 11 O -0.581 6.581 12 C -0.545 4.545 13 H 0.069 0.931 14 C 0.087 3.913 15 N -0.768 5.768 16 Si 0.908 3.092 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.276 1.276 20 N -0.437 5.437 21 H 0.080 0.920 22 H 0.081 0.919 23 H 0.078 0.922 24 H 0.166 0.834 25 H 0.171 0.829 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.381 0.619 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.049 9.498 -11.615 17.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.060 4.060 3 C -0.124 4.124 4 N -0.148 5.148 5 C -0.114 4.114 6 C -0.037 4.037 7 C -0.119 4.119 8 C 0.017 3.983 9 N -0.423 5.423 10 C 0.358 3.642 11 O -0.464 6.464 12 C -0.582 4.582 13 H 0.087 0.913 14 C -0.133 4.133 15 N -0.397 5.397 16 Si 0.733 3.267 17 H -0.188 1.188 18 H -0.202 1.202 19 H -0.202 1.202 20 N -0.153 5.153 21 H 0.099 0.901 22 H 0.100 0.900 23 H 0.097 0.903 24 H 0.183 0.817 25 H 0.188 0.812 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.213 0.787 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.194 9.961 -10.625 16.711 hybrid contribution 0.541 -0.929 -0.368 1.136 sum -7.653 9.032 -10.992 16.155 Atomic orbital electron populations 1.20685 0.87823 1.04019 1.03307 1.22350 0.98460 0.89579 0.95613 1.23543 0.90976 0.99078 0.98815 1.68417 1.08798 1.29675 1.07883 1.23624 1.02014 0.88173 0.97570 1.22209 0.90332 0.96996 0.94196 1.20787 0.99249 0.92347 0.99516 1.20734 0.96491 0.88648 0.92457 1.46121 1.62544 1.23429 1.10246 1.18252 0.78988 0.85782 0.81221 1.90605 1.60923 1.63887 1.30941 1.20918 1.37700 1.05734 0.93831 0.91298 1.25721 0.94602 0.97938 0.95023 1.70040 1.35459 1.36025 0.98195 0.86309 0.79391 0.81938 0.79063 1.18757 1.20175 1.20174 1.68179 1.08470 1.29310 1.09381 0.90108 0.90014 0.90271 0.81683 0.81220 0.89277 0.89243 0.93129 0.93227 0.78735 0.92163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.81 10.19 36.00 0.37 -0.44 16 2 C 0.08 0.96 6.79 -82.41 -0.56 0.40 16 3 C 0.04 0.41 10.88 -17.37 -0.19 0.22 16 4 N -0.43 -5.84 10.50 -13.06 -0.14 -5.98 16 5 C 0.05 0.61 10.90 -17.37 -0.19 0.42 16 6 C 0.10 1.48 6.04 -82.42 -0.50 0.98 16 7 C -0.08 -1.13 5.62 -27.89 -0.16 -1.29 16 8 C 0.14 2.75 5.66 -4.04 -0.02 2.73 16 9 N -0.77 -17.08 5.55 -61.72 -0.34 -17.42 16 10 C 0.55 15.93 7.75 -12.99 -0.10 15.83 16 11 O -0.58 -19.18 15.02 5.20 0.08 -19.10 16 12 C -0.54 -15.44 9.54 -35.63 -0.34 -15.78 16 13 H 0.07 1.78 7.85 -52.48 -0.41 1.36 16 14 C 0.09 2.44 5.50 -17.37 -0.10 2.34 16 15 N -0.77 -23.29 11.83 55.55 0.66 -22.63 16 16 Si 0.91 20.16 29.56 -169.99 -5.02 15.13 16 17 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 18 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 19 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 20 N -0.44 -6.37 10.35 -5.56 -0.06 -6.43 16 21 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 24 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 25 H 0.17 1.89 8.06 -52.49 -0.42 1.47 16 26 H 0.09 1.05 8.12 -51.93 -0.42 0.63 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.38 7.24 8.45 -40.82 -0.35 6.89 16 31 H 0.27 7.32 8.29 -40.82 -0.34 6.98 16 LS Contribution 280.61 15.07 4.23 4.23 Total: -1.00 -36.46 280.61 -6.07 -42.54 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -3.69 Total: 4.25 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.78 Total: 5.41 kcal Atomic # 7 Polarization: -52.57 SS G_CDS: 0.12 Total: -52.45 kcal Atomic # 8 Polarization: -19.18 SS G_CDS: 0.08 Total: -19.10 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -36.46 -6.07 -42.54 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347864983.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.753 kcal (2) G-P(sol) polarization free energy of solvation -36.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds