Wall clock time and date at job start Sun Mar 29 2020 22:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46727 * 2 1 4 4 C 1.50699 * 109.46770 * 120.00023 * 2 1 3 5 5 O 1.21271 * 119.99947 * 120.00453 * 4 2 1 6 6 N 1.34774 * 120.00027 * 299.99727 * 4 2 1 7 7 C 1.46496 * 120.00235 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47406 * 179.97438 * 7 6 4 9 9 H 1.07996 * 120.00366 * 0.02562 * 8 7 6 10 10 C 1.37879 * 119.99956 * 180.02562 * 8 7 6 11 11 N 1.31509 * 120.00180 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00024 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.46968 * 0.02562 * 12 10 8 14 14 H 1.48501 * 109.47478 * 119.99957 * 12 10 8 15 15 H 1.48501 * 109.47065 * 240.00124 * 12 10 8 16 16 C 1.50696 * 109.46945 * 239.99791 * 2 1 3 17 17 C 1.38387 * 120.00645 * 324.98135 * 16 2 1 18 18 N 1.32127 * 119.99994 * 179.76858 * 17 16 2 19 19 C 1.32149 * 119.99872 * 0.50887 * 18 17 16 20 20 C 1.38346 * 120.00371 * 359.48627 * 19 18 17 21 21 N 1.32127 * 120.00024 * 144.99834 * 16 2 1 22 22 H 1.08994 * 109.47099 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47028 * 300.00173 * 1 2 3 24 24 H 1.09000 * 109.46876 * 60.00140 * 1 2 3 25 25 H 0.97005 * 119.99874 * 0.02562 * 6 4 2 26 26 H 1.08998 * 109.47354 * 300.00747 * 7 6 4 27 27 H 1.09000 * 109.47134 * 60.00284 * 7 6 4 28 28 H 0.97003 * 120.00593 * 179.97438 * 11 10 8 29 29 H 1.07999 * 119.99913 * 0.02562 * 17 16 2 30 30 H 1.08002 * 120.00163 * 179.77166 * 19 18 17 31 31 H 1.07999 * 120.00348 * 180.23443 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2499 2.4545 7 6 2.1954 -0.9402 3.6507 8 6 1.6935 -0.2295 4.8812 9 1 1.0723 0.6484 4.7821 10 6 2.0275 -0.6999 6.1334 11 7 2.7844 -1.7685 6.2542 12 14 1.4047 0.1807 7.6587 13 1 0.5782 1.3463 7.2544 14 1 0.5807 -0.7530 8.4677 15 1 2.5598 0.6485 8.4664 16 6 2.0323 -0.7104 -1.2304 17 6 1.3377 -1.7958 -1.7349 18 7 1.7757 -2.4158 -2.8164 19 6 2.8826 -2.0057 -3.4104 20 6 3.5770 -0.9205 -2.9062 21 7 3.1362 -0.2973 -1.8275 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.1488 0.5386 2.5435 26 1 1.8325 -1.9680 3.6509 27 1 3.2854 -0.9398 3.6507 28 1 3.0196 -2.0994 7.1352 29 1 0.4353 -2.1335 -1.2470 30 1 3.2426 -2.5147 -4.2923 31 1 4.4796 -0.5830 -3.3939 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350728082.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:38 Heat of formation + Delta-G solvation = 0.216194 kcal Electronic energy + Delta-G solvation = -15862.445715 eV Core-core repulsion = 13143.742356 eV Total energy + Delta-G solvation = -2718.703359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.17195 -38.92883 -34.75697 -34.23091 -33.82128 -32.32631 -30.09140 -27.26500 -25.42748 -24.43760 -23.43075 -21.87920 -19.60589 -17.62622 -17.32019 -17.01579 -15.90958 -15.79496 -15.01041 -14.59627 -14.54988 -14.28081 -13.85053 -13.06084 -12.84783 -12.40077 -12.01517 -11.93899 -11.75933 -11.57479 -11.31953 -11.13808 -10.96754 -10.91692 -10.33480 -9.40896 -9.38037 -9.04604 -8.96847 -8.76775 -7.93666 -6.18638 -4.25841 0.79984 1.18279 3.22406 3.26754 3.29511 3.32426 3.59970 3.93671 4.17030 4.28755 4.37704 4.50860 4.69443 5.03636 5.05677 5.17778 5.19120 5.35028 5.42970 5.60792 5.66836 5.83953 6.07783 6.36139 7.26729 7.30087 7.37372 7.48586 7.63158 7.80800 7.94139 8.56090 8.74059 9.02776 9.40841 10.91623 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055030 B = 0.004894 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.695146 B = 5719.379937 C = 5898.818807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.065 4.065 3 H 0.115 0.885 4 C 0.509 3.491 5 O -0.551 6.551 6 N -0.707 5.707 7 C 0.249 3.751 8 C -0.543 4.543 9 H 0.064 0.936 10 C 0.064 3.936 11 N -0.885 5.885 12 Si 0.904 3.096 13 H -0.271 1.271 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.118 3.882 17 C 0.066 3.934 18 N -0.438 5.438 19 C 0.037 3.963 20 C 0.052 3.948 21 N -0.433 5.433 22 H 0.067 0.933 23 H 0.077 0.923 24 H 0.067 0.933 25 H 0.392 0.608 26 H 0.028 0.972 27 H 0.027 0.973 28 H 0.266 0.734 29 H 0.168 0.832 30 H 0.167 0.833 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.886 4.321 -15.891 16.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.088 4.088 3 H 0.133 0.867 4 C 0.292 3.708 5 O -0.430 6.430 6 N -0.355 5.355 7 C 0.129 3.871 8 C -0.581 4.581 9 H 0.082 0.918 10 C -0.140 4.140 11 N -0.523 5.523 12 Si 0.731 3.269 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.208 1.208 16 C -0.024 4.024 17 C -0.094 4.094 18 N -0.152 5.152 19 C -0.122 4.122 20 C -0.108 4.108 21 N -0.148 5.148 22 H 0.086 0.914 23 H 0.096 0.904 24 H 0.086 0.914 25 H 0.225 0.775 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.185 0.815 30 H 0.184 0.816 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.288 3.475 -15.805 16.513 hybrid contribution -0.329 0.728 0.954 1.244 sum -3.617 4.202 -14.852 15.853 Atomic orbital electron populations 1.21870 0.91601 1.03367 1.03437 1.20257 0.97523 1.01107 0.89960 0.86732 1.20023 0.81325 0.84983 0.84463 1.90686 1.38642 1.26832 1.86809 1.46412 1.51608 1.31215 1.06243 1.19138 0.95375 0.92894 0.79720 1.21250 1.33190 1.13202 0.90493 0.91760 1.24956 0.94813 0.94966 0.99275 1.69983 1.35637 1.22523 1.24131 0.86356 0.78632 0.79490 0.82399 1.19588 1.20791 1.20793 1.21581 0.91267 0.94177 0.95326 1.23545 1.00700 0.92405 0.92753 1.68442 1.12305 1.26981 1.07517 1.23708 0.92376 0.95708 1.00448 1.23713 1.00256 0.93856 0.92988 1.68193 1.10662 1.29104 1.06819 0.91423 0.90415 0.91394 0.77540 0.95441 0.95516 0.92471 0.81471 0.81563 0.81488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.52 37.16 0.32 -1.24 16 2 C -0.07 -0.95 3.06 -92.92 -0.28 -1.23 16 3 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 4 C 0.51 10.10 7.15 -10.99 -0.08 10.02 16 5 O -0.55 -13.49 16.03 5.56 0.09 -13.40 16 6 N -0.71 -14.53 5.44 -61.48 -0.33 -14.87 16 7 C 0.25 6.56 5.43 -5.20 -0.03 6.53 16 8 C -0.54 -14.54 9.28 -34.44 -0.32 -14.86 16 9 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 10 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 11 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 12 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 13 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 14 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 C 0.12 1.80 5.03 -82.41 -0.41 1.39 16 17 C 0.07 0.96 10.33 -17.37 -0.18 0.78 16 18 N -0.44 -6.23 10.50 -13.06 -0.14 -6.36 16 19 C 0.04 0.43 11.22 -17.38 -0.20 0.24 16 20 C 0.05 0.63 11.22 -17.37 -0.20 0.43 16 21 N -0.43 -6.66 10.42 -9.29 -0.10 -6.76 16 22 H 0.07 0.72 6.51 -51.93 -0.34 0.39 16 23 H 0.08 0.77 7.56 -51.93 -0.39 0.37 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.39 6.75 7.74 -40.82 -0.32 6.44 16 26 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 29 H 0.17 2.11 6.33 -52.49 -0.33 1.77 16 30 H 0.17 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.17 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 275.97 15.07 4.16 4.16 Total: -1.00 -34.34 275.97 -5.53 -39.87 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.45 Total: 3.32 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: -1.47 Total: 3.70 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.17 Total: -53.28 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.09 Total: -13.40 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -34.34 -5.53 -39.87 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350728082.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.086 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds