Wall clock time and date at job start Sun Mar 29 2020 22:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.46905 * 2 1 4 4 C 1.50708 * 109.47125 * 240.00376 * 2 1 3 5 5 O 1.21279 * 119.99910 * 239.99441 * 4 2 1 6 6 N 1.34776 * 119.99967 * 59.99633 * 4 2 1 7 7 C 1.46501 * 119.99809 * 180.02562 * 6 4 2 8 8 C 1.50706 * 109.46959 * 179.97438 * 7 6 4 9 9 H 1.08003 * 119.99567 * 0.02562 * 8 7 6 10 10 C 1.37875 * 120.00001 * 179.97438 * 8 7 6 11 11 N 1.31515 * 120.00027 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00153 * 179.97438 * 10 8 7 13 13 H 1.48506 * 109.46973 * 59.99953 * 12 10 8 14 14 H 1.48497 * 109.47043 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.47152 * 300.00460 * 12 10 8 16 16 C 1.50696 * 109.47563 * 120.00112 * 2 1 3 17 17 C 1.38387 * 120.00300 * 35.02569 * 16 2 1 18 18 N 1.32127 * 119.99994 * 179.72464 * 17 16 2 19 19 C 1.32149 * 119.99872 * 0.50887 * 18 17 16 20 20 C 1.38346 * 120.00371 * 359.48627 * 19 18 17 21 21 N 1.32127 * 120.00369 * 214.99874 * 16 2 1 22 22 H 1.09005 * 109.46526 * 179.97438 * 1 2 3 23 23 H 1.08991 * 109.47115 * 299.99473 * 1 2 3 24 24 H 1.08991 * 109.47514 * 60.00398 * 1 2 3 25 25 H 0.97003 * 120.00033 * 359.97438 * 6 4 2 26 26 H 1.08999 * 109.46963 * 299.99761 * 7 6 4 27 27 H 1.09001 * 109.47076 * 59.99964 * 7 6 4 28 28 H 0.96994 * 119.99852 * 180.02562 * 11 10 8 29 29 H 1.07999 * 119.99913 * 359.97438 * 17 16 2 30 30 H 1.08002 * 120.00163 * 179.77166 * 19 18 17 31 31 H 1.07999 * 120.00349 * 180.27731 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 8 2.7297 -1.6964 -1.1193 6 7 1.7067 -0.2499 -2.4546 7 6 2.1946 -0.9408 -3.6508 8 6 1.6917 -0.2306 -4.8813 9 1 1.0712 0.6478 -4.7821 10 6 2.0248 -0.7016 -6.1336 11 7 2.7808 -1.7709 -6.2543 12 14 1.4009 0.1782 -7.6588 13 1 1.8948 1.5787 -7.6591 14 1 1.8956 -0.5220 -8.8712 15 1 -0.0841 0.1772 -7.6582 16 6 2.0324 -0.7104 1.2304 17 6 1.3379 -1.7959 1.7348 18 7 1.7814 -2.4221 2.8104 19 6 2.8828 -2.0056 3.4104 20 6 3.5772 -0.9205 2.9061 21 7 3.1364 -0.2973 1.8273 22 1 -0.3632 -1.0278 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5137 -0.8899 25 1 1.1486 0.5386 -2.5436 26 1 3.2846 -0.9411 -3.6510 27 1 1.8309 -1.9683 -3.6507 28 1 3.0154 -2.1020 -7.1353 29 1 0.4355 -2.1337 1.2469 30 1 3.2433 -2.5151 4.2917 31 1 4.4797 -0.5829 3.3938 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350728098.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:40 Heat of formation + Delta-G solvation = -26.672773 kcal Electronic energy + Delta-G solvation = -15863.665010 eV Core-core repulsion = 13143.795658 eV Total energy + Delta-G solvation = -2719.869352 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.23274 -40.51860 -36.23742 -35.84598 -34.92939 -34.26651 -31.17616 -29.20006 -26.50423 -25.46338 -25.11444 -23.41636 -21.23169 -19.08281 -18.58148 -18.04961 -17.61952 -17.27256 -16.58401 -16.24015 -15.89296 -15.52952 -15.00504 -14.65225 -14.22166 -14.00568 -13.70164 -13.28503 -12.96196 -12.80476 -12.67175 -12.64285 -12.40216 -12.23645 -12.21690 -11.51367 -10.83464 -10.79316 -10.19338 -10.06606 -9.86880 -8.28752 -6.45721 -0.20448 0.15178 1.44339 1.48393 1.56561 1.67975 2.26874 2.45505 2.85679 3.00613 3.06420 3.34653 3.52736 3.66338 3.96909 4.07306 4.12289 4.37527 4.45528 4.61457 4.81991 4.88595 5.10448 5.22035 5.23095 5.41043 5.46767 5.66546 5.83747 6.30011 6.64636 6.80127 6.84430 7.22996 7.43377 8.83334 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.055008 B = 0.004895 C = 0.004746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.898275 B = 5718.497878 C = 5897.846807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.050 4.050 3 H 0.131 0.869 4 C 0.507 3.493 5 O -0.602 6.602 6 N -0.699 5.699 7 C 0.267 3.733 8 C -0.555 4.555 9 H 0.087 0.913 10 C 0.004 3.996 11 N -0.933 5.933 12 Si 0.985 3.015 13 H -0.262 1.262 14 H -0.287 1.287 15 H -0.260 1.260 16 C 0.092 3.908 17 C 0.052 3.948 18 N -0.460 5.460 19 C 0.044 3.956 20 C 0.049 3.951 21 N -0.462 5.462 22 H 0.064 0.936 23 H 0.096 0.904 24 H 0.089 0.911 25 H 0.411 0.589 26 H -0.016 1.016 27 H -0.011 1.011 28 H 0.268 0.732 29 H 0.177 0.823 30 H 0.209 0.791 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.995 6.068 16.775 18.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.072 4.072 3 H 0.149 0.851 4 C 0.293 3.707 5 O -0.484 6.484 6 N -0.349 5.349 7 C 0.144 3.856 8 C -0.593 4.593 9 H 0.105 0.895 10 C -0.196 4.196 11 N -0.571 5.571 12 Si 0.808 3.192 13 H -0.187 1.187 14 H -0.213 1.213 15 H -0.184 1.184 16 C -0.048 4.048 17 C -0.106 4.106 18 N -0.174 5.174 19 C -0.116 4.116 20 C -0.111 4.111 21 N -0.177 5.177 22 H 0.083 0.917 23 H 0.115 0.885 24 H 0.107 0.893 25 H 0.247 0.753 26 H 0.002 0.998 27 H 0.007 0.993 28 H 0.077 0.923 29 H 0.194 0.806 30 H 0.225 0.775 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -4.438 5.252 16.693 18.053 hybrid contribution 0.109 0.140 -1.068 1.083 sum -4.329 5.392 15.625 17.086 Atomic orbital electron populations 1.21920 0.88558 1.03910 1.05432 1.20191 0.99823 1.00657 0.86557 0.85102 1.21037 0.79852 0.84248 0.85562 1.90655 1.40808 1.29329 1.87635 1.46111 1.51945 1.31580 1.05221 1.18556 0.92747 0.91822 0.82484 1.21591 1.33363 1.13777 0.90580 0.89490 1.26076 0.94698 0.95583 1.03222 1.70139 1.37226 1.24473 1.25297 0.85197 0.79089 0.78426 0.76452 1.18655 1.21287 1.18436 1.21669 0.92024 0.95152 0.95941 1.23720 1.01245 0.92333 0.93319 1.68483 1.13604 1.27529 1.07799 1.24428 0.91168 0.95164 1.00816 1.24404 1.01101 0.93570 0.92009 1.68180 1.10968 1.30321 1.08257 0.91673 0.88496 0.89265 0.75267 0.99830 0.99304 0.92288 0.80620 0.77471 0.77782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.74 8.52 71.98 0.61 -2.13 16 2 C -0.05 -1.39 3.06 -12.29 -0.04 -1.43 16 3 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 4 C 0.51 20.49 7.15 87.66 0.63 21.11 16 5 O -0.60 -30.81 16.03 -3.03 -0.05 -30.85 16 6 N -0.70 -29.14 5.44 -466.77 -2.54 -31.68 16 7 C 0.27 14.64 5.43 85.63 0.46 15.11 16 8 C -0.56 -29.88 9.28 25.60 0.24 -29.64 16 9 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 10 C 0.00 0.21 5.46 84.65 0.46 0.67 16 11 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 12 Si 0.99 41.90 29.54 68.60 2.03 43.93 16 13 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 14 H -0.29 -12.21 7.11 99.48 0.71 -11.50 16 15 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 16 C 0.09 2.76 5.03 42.55 0.21 2.97 16 17 C 0.05 1.49 10.33 84.68 0.87 2.37 16 18 N -0.46 -12.51 10.50 -195.22 -2.05 -14.56 16 19 C 0.04 0.92 11.22 84.67 0.95 1.87 16 20 C 0.05 1.09 11.22 84.67 0.95 2.04 16 21 N -0.46 -13.73 10.42 -183.30 -1.91 -15.64 16 22 H 0.06 1.31 6.52 -2.38 -0.02 1.30 16 23 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.09 1.53 7.56 -2.39 -0.02 1.51 16 25 H 0.41 13.75 7.74 -92.71 -0.72 13.03 16 26 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 27 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 28 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 29 H 0.18 4.40 6.33 -2.91 -0.02 4.38 16 30 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 31 H 0.21 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -77.89 275.97 1.55 -76.33 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.43 Total: 15.67 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.36 Total: 12.95 kcal Atomic # 7 Polarization: -111.80 SS G_CDS: -6.21 Total: -118.02 kcal Atomic # 8 Polarization: -30.81 SS G_CDS: -0.05 Total: -30.85 kcal Atomic # 14 Polarization: 41.90 SS G_CDS: 2.03 Total: 43.93 kcal Total: -77.89 1.55 -76.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350728098.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.659 kcal (2) G-P(sol) polarization free energy of solvation -77.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds