Wall clock time and date at job start Sun Mar 29 2020 22:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38278 * 120.00002 * 2 1 4 4 N 1.32412 * 119.82984 * 354.97059 * 3 2 1 5 5 C 1.31856 * 121.78117 * 179.97438 * 4 3 2 6 6 C 1.38390 * 121.23341 * 359.97438 * 5 4 3 7 7 C 1.38320 * 119.50932 * 0.29278 * 6 5 4 8 8 C 1.40028 * 118.36274 * 359.46871 * 7 6 5 9 9 C 1.47320 * 120.61382 * 180.26354 * 8 7 6 10 10 O 1.21641 * 119.99979 * 229.54511 * 9 8 7 11 11 N 1.34780 * 120.00190 * 49.54390 * 9 8 7 12 12 C 1.46502 * 119.99805 * 5.96389 * 11 9 8 13 13 C 1.36911 * 120.00116 * 185.96450 * 11 9 8 14 14 H 1.07996 * 119.99678 * 351.49393 * 13 11 9 15 15 C 1.39016 * 119.99765 * 171.49164 * 13 11 9 16 16 N 1.31384 * 120.00418 * 5.60886 * 15 13 11 17 17 Si 1.86805 * 119.99756 * 185.60839 * 15 13 11 18 18 H 1.48504 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47189 * 119.99938 * 17 15 13 20 20 H 1.48501 * 109.46812 * 240.00058 * 17 15 13 21 21 H 1.08997 * 109.46668 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46661 * 299.99910 * 1 2 3 23 23 H 1.08996 * 109.47520 * 59.99563 * 1 2 3 24 24 H 0.96999 * 120.00079 * 180.02562 * 2 1 3 25 25 H 1.08002 * 119.38469 * 180.02562 * 5 4 3 26 26 H 1.07997 * 120.24336 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.81321 * 179.70282 * 7 6 5 28 28 H 1.08997 * 109.46855 * 5.41706 * 12 11 9 29 29 H 1.09005 * 109.46526 * 125.41702 * 12 11 9 30 30 H 1.08997 * 109.46885 * 245.41314 * 12 11 9 31 31 H 0.96999 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1564 1.1975 0.0000 4 7 1.4947 2.3401 -0.1007 5 6 2.1149 3.5037 -0.1041 6 6 3.4927 3.5829 -0.0015 7 6 4.2362 2.4209 0.1007 8 6 3.5581 1.1958 0.1077 9 6 4.3003 -0.0718 0.2203 10 8 4.0766 -0.9788 -0.5587 11 7 5.2272 -0.2265 1.1865 12 6 5.4054 0.8126 2.2037 13 6 6.0022 -1.3547 1.2172 14 1 5.7817 -2.1795 0.5558 15 6 7.0730 -1.4385 2.0998 16 7 7.2755 -0.4840 2.9796 17 14 8.2242 -2.9083 2.0347 18 1 7.7817 -3.8365 0.9634 19 1 9.6050 -2.4432 1.7482 20 1 8.2005 -3.6137 3.3413 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.9500 -0.8400 -0.0004 25 1 1.5367 4.4121 -0.1878 26 1 3.9841 4.5445 -0.0056 27 1 5.3128 2.4580 0.1770 28 1 4.6431 1.5810 2.0755 29 1 5.3119 0.3698 3.1954 30 1 6.3937 1.2597 2.0971 31 1 8.0229 -0.5423 3.5952 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001353554698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:56 Heat of formation + Delta-G solvation = 24.298410 kcal Electronic energy + Delta-G solvation = -16594.693276 eV Core-core repulsion = 13877.034201 eV Total energy + Delta-G solvation = -2717.659075 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.03364 -37.90860 -35.48468 -34.58060 -32.29195 -31.21726 -29.86999 -26.50489 -25.68808 -24.91030 -23.15692 -21.68824 -19.56760 -17.40972 -17.05871 -16.41335 -15.99976 -15.08683 -14.56242 -14.44612 -13.99850 -13.76762 -13.58742 -13.03766 -12.78883 -12.51791 -12.01285 -11.89227 -11.61879 -11.41577 -11.03959 -10.91849 -10.38316 -10.33665 -9.91790 -9.26375 -9.10926 -9.09312 -8.42084 -7.94760 -7.22908 -6.34269 -3.88350 1.51343 1.90726 3.09640 3.20075 3.27411 3.67788 3.84504 4.04592 4.38838 4.80434 5.01412 5.09318 5.31736 5.47296 5.63781 5.66194 5.75725 5.80007 6.02171 6.09535 6.38396 6.43572 6.68652 6.94142 7.05624 7.34797 7.47651 7.61086 7.80693 7.99789 8.40501 8.61573 9.09387 9.35303 9.90345 10.59411 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.007654 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.822899 B = 3657.263908 C = 4172.532484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.717 5.717 3 C 0.429 3.571 4 N -0.551 5.551 5 C 0.145 3.855 6 C -0.245 4.245 7 C -0.011 4.011 8 C -0.208 4.208 9 C 0.477 3.523 10 O -0.601 6.601 11 N -0.430 5.430 12 C 0.110 3.890 13 C -0.300 4.300 14 H 0.107 0.893 15 C 0.027 3.973 16 N -0.881 5.881 17 Si 0.933 3.067 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.280 1.280 21 H 0.066 0.934 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.422 0.578 25 H 0.150 0.850 26 H 0.128 0.872 27 H 0.134 0.866 28 H 0.029 0.971 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.698 6.228 -1.285 9.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.352 5.352 3 C 0.191 3.809 4 N -0.270 5.270 5 C -0.013 4.013 6 C -0.268 4.268 7 C -0.038 4.038 8 C -0.218 4.218 9 C 0.266 3.734 10 O -0.489 6.489 11 N -0.146 5.146 12 C -0.033 4.033 13 C -0.428 4.428 14 H 0.125 0.875 15 C -0.175 4.175 16 N -0.522 5.522 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.206 1.206 21 H 0.085 0.915 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.262 0.738 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.151 0.849 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.736 5.735 -1.523 9.750 hybrid contribution 1.801 -0.710 0.287 1.957 sum -5.935 5.025 -1.236 7.874 Atomic orbital electron populations 1.21389 0.80129 1.01161 1.01433 1.44417 1.06209 1.05650 1.78941 1.18229 0.86990 0.86552 0.89082 1.67170 1.40188 0.97442 1.22167 1.22351 0.92033 0.94285 0.92661 1.21637 0.95261 0.98767 1.11115 1.21539 1.00270 0.90770 0.91187 1.20428 0.93014 0.95920 1.12473 1.17484 0.84358 0.87156 0.84429 1.90577 1.69785 1.42916 1.45583 1.43668 1.30229 1.18053 1.22634 1.21937 0.99434 0.89421 0.92520 1.19911 1.06956 0.95399 1.20494 0.87485 1.25403 0.97885 0.98859 0.95396 1.70178 1.30092 1.32663 1.19222 0.85744 0.79531 0.80461 0.78321 1.19109 1.20506 1.20637 0.91525 0.93080 0.92838 0.73819 0.83292 0.85383 0.84855 0.95280 0.91156 0.91267 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.47 10.71 59.85 0.64 2.11 16 2 N -0.72 -13.34 5.73 -66.99 -0.38 -13.73 16 3 C 0.43 8.54 7.47 -155.16 -1.16 7.38 16 4 N -0.55 -9.81 9.55 -12.18 -0.12 -9.92 16 5 C 0.15 2.17 11.16 -17.48 -0.20 1.97 16 6 C -0.24 -3.65 10.09 -39.50 -0.40 -4.05 16 7 C -0.01 -0.20 7.69 -38.88 -0.30 -0.50 16 8 C -0.21 -4.42 4.77 -104.65 -0.50 -4.92 16 9 C 0.48 11.96 6.63 -12.57 -0.08 11.88 16 10 O -0.60 -16.55 15.08 5.24 0.08 -16.47 16 11 N -0.43 -11.14 3.02 -123.46 -0.37 -11.51 16 12 C 0.11 2.55 7.81 59.85 0.47 3.02 16 13 C -0.30 -8.26 9.55 -15.00 -0.14 -8.41 16 14 H 0.11 3.08 7.19 -52.49 -0.38 2.70 16 15 C 0.03 0.70 5.46 -17.46 -0.10 0.61 16 16 N -0.88 -22.75 9.47 55.50 0.53 -22.22 16 17 Si 0.93 20.42 29.56 -169.99 -5.02 15.40 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 20 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 21 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 22 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 23 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 24 H 0.42 8.51 6.61 -40.82 -0.27 8.24 16 25 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 26 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 27 H 0.13 2.36 7.48 -52.49 -0.39 1.97 16 28 H 0.03 0.60 5.04 -51.93 -0.26 0.34 16 29 H 0.07 1.73 7.07 -51.93 -0.37 1.36 16 30 H 0.07 1.64 7.04 -51.93 -0.37 1.28 16 31 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 264.34 15.07 3.98 3.98 Total: -1.00 -30.50 264.34 -6.36 -36.86 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -3.28 Total: 8.53 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: -1.76 Total: 9.10 kcal Atomic # 7 Polarization: -57.04 SS G_CDS: -0.35 Total: -57.39 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.08 Total: -16.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.50 -6.36 -36.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353554698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.154 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds