Wall clock time and date at job start Sun Mar 29 2020 22:18:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.38278 * 120.00002 * 2 1 4 4 N 1.32412 * 119.82984 * 354.97059 * 3 2 1 5 5 C 1.31856 * 121.78117 * 179.97438 * 4 3 2 6 6 C 1.38390 * 121.23341 * 359.97438 * 5 4 3 7 7 C 1.38320 * 119.50932 * 0.29278 * 6 5 4 8 8 C 1.40028 * 118.36274 * 359.46871 * 7 6 5 9 9 C 1.47320 * 120.61382 * 180.26354 * 8 7 6 10 10 O 1.21641 * 119.99979 * 229.54511 * 9 8 7 11 11 N 1.34780 * 120.00190 * 49.54390 * 9 8 7 12 12 C 1.46502 * 119.99805 * 5.96389 * 11 9 8 13 13 C 1.36911 * 120.00116 * 185.96450 * 11 9 8 14 14 H 1.07996 * 119.99678 * 351.49393 * 13 11 9 15 15 C 1.39016 * 119.99765 * 171.49164 * 13 11 9 16 16 N 1.31384 * 120.00418 * 5.60886 * 15 13 11 17 17 Si 1.86805 * 119.99756 * 185.60839 * 15 13 11 18 18 H 1.48504 * 109.47019 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47189 * 119.99938 * 17 15 13 20 20 H 1.48501 * 109.46812 * 240.00058 * 17 15 13 21 21 H 1.08997 * 109.46668 * 180.02562 * 1 2 3 22 22 H 1.09009 * 109.46661 * 299.99910 * 1 2 3 23 23 H 1.08996 * 109.47520 * 59.99563 * 1 2 3 24 24 H 0.96999 * 120.00079 * 180.02562 * 2 1 3 25 25 H 1.08002 * 119.38469 * 180.02562 * 5 4 3 26 26 H 1.07997 * 120.24336 * 180.02562 * 6 5 4 27 27 H 1.07999 * 120.81321 * 179.70282 * 7 6 5 28 28 H 1.08997 * 109.46855 * 5.41706 * 12 11 9 29 29 H 1.09005 * 109.46526 * 125.41702 * 12 11 9 30 30 H 1.08997 * 109.46885 * 245.41314 * 12 11 9 31 31 H 0.96999 * 120.00154 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1564 1.1975 0.0000 4 7 1.4947 2.3401 -0.1007 5 6 2.1149 3.5037 -0.1041 6 6 3.4927 3.5829 -0.0015 7 6 4.2362 2.4209 0.1007 8 6 3.5581 1.1958 0.1077 9 6 4.3003 -0.0718 0.2203 10 8 4.0766 -0.9788 -0.5587 11 7 5.2272 -0.2265 1.1865 12 6 5.4054 0.8126 2.2037 13 6 6.0022 -1.3547 1.2172 14 1 5.7817 -2.1795 0.5558 15 6 7.0730 -1.4385 2.0998 16 7 7.2755 -0.4840 2.9796 17 14 8.2242 -2.9083 2.0347 18 1 7.7817 -3.8365 0.9634 19 1 9.6050 -2.4432 1.7482 20 1 8.2005 -3.6137 3.3413 21 1 -0.3632 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 1.9500 -0.8400 -0.0004 25 1 1.5367 4.4121 -0.1878 26 1 3.9841 4.5445 -0.0056 27 1 5.3128 2.4580 0.1770 28 1 4.6431 1.5810 2.0755 29 1 5.3119 0.3698 3.1954 30 1 6.3937 1.2597 2.0971 31 1 8.0229 -0.5423 3.5952 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353554698.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:56 Heat of formation + Delta-G solvation = 3.775841 kcal Electronic energy + Delta-G solvation = -16595.583202 eV Core-core repulsion = 13877.034201 eV Total energy + Delta-G solvation = -2718.549001 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.53709 -39.68571 -37.04268 -36.33652 -34.01600 -32.92222 -31.20809 -28.39485 -27.03645 -26.65184 -24.75709 -23.04624 -21.30899 -19.07982 -18.71740 -18.15345 -17.48113 -16.83953 -16.08824 -15.98710 -15.63871 -15.44234 -15.01786 -14.70185 -14.11622 -13.95477 -13.73193 -13.49900 -13.16692 -12.84747 -12.79506 -12.76461 -12.36053 -12.13583 -11.20844 -11.06851 -10.81991 -10.53825 -10.20307 -9.94455 -8.60837 -8.31167 -5.95751 0.11520 0.56092 1.34932 1.39784 1.54037 1.99056 2.22723 2.38855 2.91702 3.06504 3.14408 3.68876 3.97393 4.09751 4.25283 4.42025 4.53247 4.58923 4.69220 4.76193 4.91003 5.08021 5.13862 5.37297 5.39719 5.43007 5.68839 5.97050 6.29836 6.34020 6.44622 7.08832 7.21848 7.40841 7.95058 8.61109 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.034999 B = 0.007654 C = 0.006709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.822899 B = 3657.263908 C = 4172.532484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.729 5.729 3 C 0.416 3.584 4 N -0.556 5.556 5 C 0.158 3.842 6 C -0.230 4.230 7 C -0.015 4.015 8 C -0.250 4.250 9 C 0.477 3.523 10 O -0.638 6.638 11 N -0.447 5.447 12 C 0.129 3.871 13 C -0.343 4.343 14 H 0.081 0.919 15 C -0.003 4.003 16 N -0.893 5.893 17 Si 0.997 3.003 18 H -0.275 1.275 19 H -0.268 1.268 20 H -0.269 1.269 21 H 0.089 0.911 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.409 0.591 25 H 0.200 0.800 26 H 0.172 0.828 27 H 0.131 0.869 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.174 8.274 -1.088 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.361 5.361 3 C 0.179 3.821 4 N -0.275 5.275 5 C -0.001 4.001 6 C -0.252 4.252 7 C -0.042 4.042 8 C -0.261 4.261 9 C 0.267 3.733 10 O -0.528 6.528 11 N -0.162 5.162 12 C -0.013 4.013 13 C -0.470 4.470 14 H 0.099 0.901 15 C -0.205 4.205 16 N -0.532 5.532 17 Si 0.820 3.180 18 H -0.199 1.199 19 H -0.193 1.193 20 H -0.194 1.194 21 H 0.108 0.892 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.247 0.753 25 H 0.217 0.783 26 H 0.189 0.811 27 H 0.149 0.851 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.235 7.811 -1.305 11.425 hybrid contribution 1.852 -1.202 0.189 2.216 sum -6.383 6.609 -1.116 9.256 Atomic orbital electron populations 1.21576 0.77742 1.02926 1.01791 1.44648 1.07817 1.04978 1.78687 1.18390 0.86697 0.87639 0.89400 1.67327 1.40145 0.97571 1.22447 1.23281 0.92692 0.94830 0.89338 1.22060 0.95248 0.99161 1.08731 1.21684 1.00503 0.90962 0.91010 1.20215 0.93773 0.94995 1.17115 1.18151 0.83695 0.88142 0.83275 1.90520 1.70755 1.44798 1.46721 1.43842 1.30693 1.18214 1.23495 1.21725 0.99692 0.89067 0.90840 1.19847 1.09190 0.96072 1.21924 0.90110 1.26150 0.98373 1.01507 0.94441 1.70253 1.30358 1.33578 1.19004 0.84823 0.77649 0.77184 0.78354 1.19946 1.19280 1.19384 0.89241 0.92535 0.92381 0.75318 0.78339 0.81065 0.85081 0.92825 0.93100 0.92142 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.81 10.71 127.77 1.37 4.18 16 2 N -0.73 -27.33 5.73 -365.87 -2.10 -29.42 16 3 C 0.42 16.32 7.47 133.66 1.00 17.32 16 4 N -0.56 -18.33 9.55 -192.44 -1.84 -20.17 16 5 C 0.16 3.99 11.16 84.73 0.95 4.94 16 6 C -0.23 -5.91 10.09 22.33 0.23 -5.68 16 7 C -0.02 -0.53 7.69 22.72 0.17 -0.35 16 8 C -0.25 -10.69 4.77 -19.88 -0.09 -10.78 16 9 C 0.48 24.90 6.63 86.63 0.57 25.47 16 10 O -0.64 -37.06 15.08 -4.16 -0.06 -37.13 16 11 N -0.45 -24.03 3.02 -662.75 -2.00 -26.04 16 12 C 0.13 6.12 7.81 127.77 1.00 7.12 16 13 C -0.34 -19.73 9.55 84.09 0.80 -18.92 16 14 H 0.08 4.95 7.19 -2.91 -0.02 4.93 16 15 C 0.00 -0.17 5.46 84.95 0.46 0.29 16 16 N -0.89 -46.37 9.47 21.68 0.21 -46.17 16 17 Si 1.00 42.29 29.56 68.60 2.03 44.31 16 18 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 21 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 22 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 23 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.41 17.22 6.61 -92.71 -0.61 16.61 16 25 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.17 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.13 4.54 7.48 -2.91 -0.02 4.52 16 28 H 0.05 2.22 5.04 -2.39 -0.01 2.21 16 29 H 0.05 2.56 7.07 -2.38 -0.02 2.54 16 30 H 0.06 2.91 7.04 -2.39 -0.02 2.89 16 31 H 0.27 13.22 8.31 -92.71 -0.77 12.45 16 Total: -1.00 -68.72 264.34 3.24 -65.48 By element: Atomic # 1 Polarization: 25.01 SS G_CDS: 0.54 Total: 25.55 kcal Atomic # 6 Polarization: 17.12 SS G_CDS: 6.46 Total: 23.58 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -5.73 Total: -121.80 kcal Atomic # 8 Polarization: -37.06 SS G_CDS: -0.06 Total: -37.13 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -68.72 3.24 -65.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353554698.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.258 kcal (2) G-P(sol) polarization free energy of solvation -68.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds