Wall clock time and date at job start Sun Mar 29 2020 21:42:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.50706 * 109.46976 * 2 1
4 4 N 1.32149 * 120.54272 * 264.32462 * 3 2 1
5 5 C 1.31859 * 120.97404 * 180.33512 * 4 3 2
6 6 C 1.50698 * 118.94470 * 179.67749 * 5 4 3
7 7 N 1.31896 * 122.11229 * 359.65788 * 5 4 3
8 8 C 1.32116 * 120.97264 * 0.02562 * 7 5 4
9 9 C 1.40000 * 120.53892 * 84.03893 * 3 2 1
10 10 C 1.47715 * 120.94628 * 359.97438 * 9 3 2
11 11 O 1.21583 * 120.00257 * 353.93530 * 10 9 3
12 12 N 1.34777 * 119.99767 * 173.93701 * 10 9 3
13 13 C 1.36869 * 119.99944 * 179.97438 * 12 10 9
14 14 H 1.08003 * 119.99983 * 0.02562 * 13 12 10
15 15 C 1.39055 * 120.00018 * 179.97438 * 13 12 10
16 16 N 1.31364 * 119.99836 * 0.02562 * 15 13 12
17 17 Si 1.86804 * 119.99835 * 180.02562 * 15 13 12
18 18 H 1.48501 * 109.46908 * 60.00499 * 17 15 13
19 19 H 1.48498 * 109.46815 * 180.02562 * 17 15 13
20 20 H 1.48498 * 109.47182 * 299.99954 * 17 15 13
21 21 H 1.08997 * 109.47769 * 300.00364 * 1 2 3
22 22 H 1.09009 * 109.47053 * 60.00051 * 1 2 3
23 23 H 1.09003 * 109.47043 * 179.97438 * 1 2 3
24 24 H 1.08997 * 109.47274 * 240.00224 * 2 1 3
25 25 H 1.08996 * 109.46806 * 119.99816 * 2 1 3
26 26 H 1.09001 * 109.47320 * 269.98048 * 6 5 4
27 27 H 1.08997 * 109.47400 * 29.98178 * 6 5 4
28 28 H 1.09005 * 109.47274 * 149.97694 * 6 5 4
29 29 H 1.08001 * 120.54425 * 179.97438 * 8 7 5
30 30 H 0.97003 * 120.00252 * 0.02562 * 12 10 9
31 31 H 0.96999 * 119.99303 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0323 1.4209 0.0000
4 7 2.3623 2.0165 -1.1326
5 6 2.8089 3.2571 -1.1418
6 6 3.1788 3.8893 -2.4588
7 7 2.9419 3.9627 -0.0354
8 6 2.6297 3.4482 1.1408
9 6 2.1513 2.1333 1.1993
10 6 1.7887 1.5136 2.4902
11 8 1.2772 0.4108 2.5127
12 7 2.0248 2.1706 3.6430
13 6 1.6883 1.5967 4.8391
14 1 1.2339 0.6171 4.8591
15 6 1.9323 2.2743 6.0286
16 7 2.4854 3.4656 6.0042
17 14 1.4737 1.4906 7.6610
18 1 2.2099 0.2107 7.8198
19 1 1.8338 2.4102 8.7700
20 1 0.0124 1.2282 7.6910
21 1 -0.3634 0.5139 0.8899
22 1 -0.3634 0.5139 -0.8901
23 1 -0.3633 -1.0277 -0.0005
24 1 1.8933 -0.5138 -0.8900
25 1 1.8933 -0.5138 0.8900
26 1 4.2302 3.6965 -2.6718
27 1 2.5635 3.4640 -3.2516
28 1 3.0101 4.9650 -2.4056
29 1 2.7417 4.0320 2.0424
30 1 2.4325 3.0506 3.6250
31 1 2.6560 3.9381 6.8340
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001464717632.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:42:46
Heat of formation + Delta-G solvation = -1.835021 kcal
Electronic energy + Delta-G solvation = -16249.701689 eV
Core-core repulsion = 13530.909383 eV
Total energy + Delta-G solvation = -2718.792306 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.81869 -38.12459 -35.05255 -33.86357 -33.07407 -31.56896 -30.77776 -28.54188
-25.31969 -24.44766 -23.24796 -21.16293 -19.87548 -18.32118 -17.39347 -16.32457
-15.60908 -15.05928 -14.88103 -14.03616 -13.76550 -13.61166 -13.41594 -13.22446
-12.60846 -12.52776 -12.30778 -11.90498 -11.77001 -11.23754 -11.14569 -11.02302
-10.61076 -10.50853 -10.43099 -10.17320 -9.69786 -8.91341 -8.87508 -8.42353
-8.20292 -6.69465 -4.00753 0.95299 1.43036 3.08920 3.14520 3.18036
3.66089 3.97235 4.18123 4.30487 4.37509 4.73746 4.85464 5.13385
5.36084 5.41785 5.57165 5.60545 5.72776 5.85276 5.88054 6.02813
6.07790 6.23407 6.38800 6.65318 6.76685 6.84679 7.30049 7.35874
7.80746 8.34538 8.42075 8.91641 9.25045 9.80778 10.46681
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.033686 B = 0.006931 C = 0.005851
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 831.007952 B = 4038.933572 C = 4784.028646
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.129 4.129
2 C -0.074 4.074
3 C 0.217 3.783
4 N -0.524 5.524
5 C 0.301 3.699
6 C -0.079 4.079
7 N -0.525 5.525
8 C 0.159 3.841
9 C -0.205 4.205
10 C 0.470 3.530
11 O -0.583 6.583
12 N -0.537 5.537
13 C -0.293 4.293
14 H 0.111 0.889
15 C 0.025 3.975
16 N -0.884 5.884
17 Si 0.938 3.062
18 H -0.270 1.270
19 H -0.282 1.282
20 H -0.270 1.270
21 H 0.068 0.932
22 H 0.040 0.960
23 H 0.058 0.942
24 H 0.067 0.933
25 H 0.115 0.885
26 H 0.081 0.919
27 H 0.081 0.919
28 H 0.082 0.918
29 H 0.170 0.830
30 H 0.392 0.608
31 H 0.279 0.721
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.444 0.311 -9.357 9.372
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.187 4.187
2 C -0.112 4.112
3 C 0.069 3.931
4 N -0.239 5.239
5 C 0.034 3.966
6 C -0.138 4.138
7 N -0.239 5.239
8 C -0.009 4.009
9 C -0.213 4.213
10 C 0.258 3.742
11 O -0.470 6.470
12 N -0.170 5.170
13 C -0.422 4.422
14 H 0.129 0.871
15 C -0.180 4.180
16 N -0.523 5.523
17 Si 0.764 3.236
18 H -0.195 1.195
19 H -0.207 1.207
20 H -0.195 1.195
21 H 0.087 0.913
22 H 0.059 0.941
23 H 0.077 0.923
24 H 0.085 0.915
25 H 0.133 0.867
26 H 0.100 0.900
27 H 0.100 0.900
28 H 0.101 0.899
29 H 0.187 0.813
30 H 0.227 0.773
31 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges 0.409 0.164 -9.999 10.009
hybrid contribution -0.068 0.064 1.726 1.729
sum 0.341 0.229 -8.273 8.283
Atomic orbital electron populations
1.21539 0.93786 1.01774 1.01588 1.20710 0.97106 0.89273 1.04088
1.21870 0.88190 0.96610 0.86425 1.68080 1.14234 1.11396 1.30163
1.23202 0.91563 0.87092 0.94741 1.20485 1.02353 1.00620 0.90316
1.68144 1.18521 1.38436 0.98816 1.23470 0.89620 0.91862 0.95917
1.21944 1.04857 0.96820 0.97631 1.17204 0.87227 0.87292 0.82513
1.90549 1.49712 1.20560 1.86173 1.41899 1.51775 1.18285 1.05015
1.19837 1.36973 1.03476 0.81921 0.87113 1.25445 0.96458 0.95675
1.00397 1.69576 1.40502 1.12345 1.29856 0.85793 0.79363 0.78794
0.79667 1.19529 1.20694 1.19528 0.91287 0.94077 0.92342 0.91458
0.86710 0.90036 0.90003 0.89938 0.81346 0.77310 0.91109
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -2.15 9.51 37.16 0.35 -1.79 16
2 C -0.07 -1.31 5.49 -27.88 -0.15 -1.46 16
3 C 0.22 4.16 6.12 -81.79 -0.50 3.66 16
4 N -0.52 -9.43 10.25 -6.65 -0.07 -9.50 16
5 C 0.30 5.04 7.64 -157.05 -1.20 3.84 16
6 C -0.08 -0.93 10.31 36.00 0.37 -0.56 16
7 N -0.52 -9.37 10.31 -10.37 -0.11 -9.48 16
8 C 0.16 2.96 10.80 -16.75 -0.18 2.78 16
9 C -0.20 -4.17 5.91 -104.69 -0.62 -4.78 16
10 C 0.47 10.98 7.67 -12.39 -0.10 10.88 16
11 O -0.58 -14.57 11.61 5.29 0.06 -14.51 16
12 N -0.54 -13.07 5.23 -11.87 -0.06 -13.13 16
13 C -0.29 -7.65 9.68 -15.00 -0.15 -7.80 16
14 H 0.11 2.99 7.15 -52.48 -0.38 2.61 16
15 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16
16 N -0.88 -22.60 13.05 55.50 0.72 -21.88 16
17 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16
18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16
20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16
21 H 0.07 1.33 6.90 -51.93 -0.36 0.97 16
22 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16
23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16
24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16
25 H 0.11 2.25 5.93 -51.93 -0.31 1.94 16
26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16
27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16
28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16
29 H 0.17 2.91 6.58 -52.49 -0.35 2.57 16
30 H 0.39 9.12 6.06 -40.82 -0.25 8.87 16
31 H 0.28 6.72 8.31 -40.82 -0.34 6.39 16
LS Contribution 269.76 15.07 4.07 4.07
Total: -1.00 -28.44 269.76 -5.98 -34.42
By element:
Atomic # 1 Polarization: 13.34 SS G_CDS: -3.31 Total: 10.03 kcal
Atomic # 6 Polarization: 7.55 SS G_CDS: -2.26 Total: 5.29 kcal
Atomic # 7 Polarization: -54.47 SS G_CDS: 0.49 Total: -53.99 kcal
Atomic # 8 Polarization: -14.57 SS G_CDS: 0.06 Total: -14.51 kcal
Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal
Total LS contribution 4.07 Total: 4.07 kcal
Total: -28.44 -5.98 -34.42 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001464717632.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.588 kcal
(2) G-P(sol) polarization free energy of solvation -28.442 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.145 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.835 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds