Wall clock time and date at job start Sun Mar 29 2020 21:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 109.46976 * 2 1 4 4 N 1.32149 * 120.54272 * 264.32462 * 3 2 1 5 5 C 1.31859 * 120.97404 * 180.33512 * 4 3 2 6 6 C 1.50698 * 118.94470 * 179.67749 * 5 4 3 7 7 N 1.31896 * 122.11229 * 359.65788 * 5 4 3 8 8 C 1.32116 * 120.97264 * 0.02562 * 7 5 4 9 9 C 1.40000 * 120.53892 * 84.03893 * 3 2 1 10 10 C 1.47715 * 120.94628 * 359.97438 * 9 3 2 11 11 O 1.21583 * 120.00257 * 353.93530 * 10 9 3 12 12 N 1.34777 * 119.99767 * 173.93701 * 10 9 3 13 13 C 1.36869 * 119.99944 * 179.97438 * 12 10 9 14 14 H 1.08003 * 119.99983 * 0.02562 * 13 12 10 15 15 C 1.39055 * 120.00018 * 179.97438 * 13 12 10 16 16 N 1.31364 * 119.99836 * 0.02562 * 15 13 12 17 17 Si 1.86804 * 119.99835 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46908 * 60.00499 * 17 15 13 19 19 H 1.48498 * 109.46815 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47182 * 299.99954 * 17 15 13 21 21 H 1.08997 * 109.47769 * 300.00364 * 1 2 3 22 22 H 1.09009 * 109.47053 * 60.00051 * 1 2 3 23 23 H 1.09003 * 109.47043 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47274 * 240.00224 * 2 1 3 25 25 H 1.08996 * 109.46806 * 119.99816 * 2 1 3 26 26 H 1.09001 * 109.47320 * 269.98048 * 6 5 4 27 27 H 1.08997 * 109.47400 * 29.98178 * 6 5 4 28 28 H 1.09005 * 109.47274 * 149.97694 * 6 5 4 29 29 H 1.08001 * 120.54425 * 179.97438 * 8 7 5 30 30 H 0.97003 * 120.00252 * 0.02562 * 12 10 9 31 31 H 0.96999 * 119.99303 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.3623 2.0165 -1.1326 5 6 2.8089 3.2571 -1.1418 6 6 3.1788 3.8893 -2.4588 7 7 2.9419 3.9627 -0.0354 8 6 2.6297 3.4482 1.1408 9 6 2.1513 2.1333 1.1993 10 6 1.7887 1.5136 2.4902 11 8 1.2772 0.4108 2.5127 12 7 2.0248 2.1706 3.6430 13 6 1.6883 1.5967 4.8391 14 1 1.2339 0.6171 4.8591 15 6 1.9323 2.2743 6.0286 16 7 2.4854 3.4656 6.0042 17 14 1.4737 1.4906 7.6610 18 1 2.2099 0.2107 7.8198 19 1 1.8338 2.4102 8.7700 20 1 0.0124 1.2282 7.6910 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 4.2302 3.6965 -2.6718 27 1 2.5635 3.4640 -3.2516 28 1 3.0101 4.9650 -2.4056 29 1 2.7417 4.0320 2.0424 30 1 2.4325 3.0506 3.6250 31 1 2.6560 3.9381 6.8340 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464717632.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:42:46 Heat of formation + Delta-G solvation = -1.835021 kcal Electronic energy + Delta-G solvation = -16249.701689 eV Core-core repulsion = 13530.909383 eV Total energy + Delta-G solvation = -2718.792306 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.81869 -38.12459 -35.05255 -33.86357 -33.07407 -31.56896 -30.77776 -28.54188 -25.31969 -24.44766 -23.24796 -21.16293 -19.87548 -18.32118 -17.39347 -16.32457 -15.60908 -15.05928 -14.88103 -14.03616 -13.76550 -13.61166 -13.41594 -13.22446 -12.60846 -12.52776 -12.30778 -11.90498 -11.77001 -11.23754 -11.14569 -11.02302 -10.61076 -10.50853 -10.43099 -10.17320 -9.69786 -8.91341 -8.87508 -8.42353 -8.20292 -6.69465 -4.00753 0.95299 1.43036 3.08920 3.14520 3.18036 3.66089 3.97235 4.18123 4.30487 4.37509 4.73746 4.85464 5.13385 5.36084 5.41785 5.57165 5.60545 5.72776 5.85276 5.88054 6.02813 6.07790 6.23407 6.38800 6.65318 6.76685 6.84679 7.30049 7.35874 7.80746 8.34538 8.42075 8.91641 9.25045 9.80778 10.46681 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033686 B = 0.006931 C = 0.005851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.007952 B = 4038.933572 C = 4784.028646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.074 4.074 3 C 0.217 3.783 4 N -0.524 5.524 5 C 0.301 3.699 6 C -0.079 4.079 7 N -0.525 5.525 8 C 0.159 3.841 9 C -0.205 4.205 10 C 0.470 3.530 11 O -0.583 6.583 12 N -0.537 5.537 13 C -0.293 4.293 14 H 0.111 0.889 15 C 0.025 3.975 16 N -0.884 5.884 17 Si 0.938 3.062 18 H -0.270 1.270 19 H -0.282 1.282 20 H -0.270 1.270 21 H 0.068 0.932 22 H 0.040 0.960 23 H 0.058 0.942 24 H 0.067 0.933 25 H 0.115 0.885 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.170 0.830 30 H 0.392 0.608 31 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.444 0.311 -9.357 9.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.112 4.112 3 C 0.069 3.931 4 N -0.239 5.239 5 C 0.034 3.966 6 C -0.138 4.138 7 N -0.239 5.239 8 C -0.009 4.009 9 C -0.213 4.213 10 C 0.258 3.742 11 O -0.470 6.470 12 N -0.170 5.170 13 C -0.422 4.422 14 H 0.129 0.871 15 C -0.180 4.180 16 N -0.523 5.523 17 Si 0.764 3.236 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.195 1.195 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.077 0.923 24 H 0.085 0.915 25 H 0.133 0.867 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.101 0.899 29 H 0.187 0.813 30 H 0.227 0.773 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.409 0.164 -9.999 10.009 hybrid contribution -0.068 0.064 1.726 1.729 sum 0.341 0.229 -8.273 8.283 Atomic orbital electron populations 1.21539 0.93786 1.01774 1.01588 1.20710 0.97106 0.89273 1.04088 1.21870 0.88190 0.96610 0.86425 1.68080 1.14234 1.11396 1.30163 1.23202 0.91563 0.87092 0.94741 1.20485 1.02353 1.00620 0.90316 1.68144 1.18521 1.38436 0.98816 1.23470 0.89620 0.91862 0.95917 1.21944 1.04857 0.96820 0.97631 1.17204 0.87227 0.87292 0.82513 1.90549 1.49712 1.20560 1.86173 1.41899 1.51775 1.18285 1.05015 1.19837 1.36973 1.03476 0.81921 0.87113 1.25445 0.96458 0.95675 1.00397 1.69576 1.40502 1.12345 1.29856 0.85793 0.79363 0.78794 0.79667 1.19529 1.20694 1.19528 0.91287 0.94077 0.92342 0.91458 0.86710 0.90036 0.90003 0.89938 0.81346 0.77310 0.91109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 9.51 37.16 0.35 -1.79 16 2 C -0.07 -1.31 5.49 -27.88 -0.15 -1.46 16 3 C 0.22 4.16 6.12 -81.79 -0.50 3.66 16 4 N -0.52 -9.43 10.25 -6.65 -0.07 -9.50 16 5 C 0.30 5.04 7.64 -157.05 -1.20 3.84 16 6 C -0.08 -0.93 10.31 36.00 0.37 -0.56 16 7 N -0.52 -9.37 10.31 -10.37 -0.11 -9.48 16 8 C 0.16 2.96 10.80 -16.75 -0.18 2.78 16 9 C -0.20 -4.17 5.91 -104.69 -0.62 -4.78 16 10 C 0.47 10.98 7.67 -12.39 -0.10 10.88 16 11 O -0.58 -14.57 11.61 5.29 0.06 -14.51 16 12 N -0.54 -13.07 5.23 -11.87 -0.06 -13.13 16 13 C -0.29 -7.65 9.68 -15.00 -0.15 -7.80 16 14 H 0.11 2.99 7.15 -52.48 -0.38 2.61 16 15 C 0.02 0.62 5.50 -17.45 -0.10 0.52 16 16 N -0.88 -22.60 13.05 55.50 0.72 -21.88 16 17 Si 0.94 19.71 29.55 -169.99 -5.02 14.68 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 19 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 20 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 21 H 0.07 1.33 6.90 -51.93 -0.36 0.97 16 22 H 0.04 0.63 8.14 -51.92 -0.42 0.21 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 24 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 25 H 0.11 2.25 5.93 -51.93 -0.31 1.94 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 27 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.17 2.91 6.58 -52.49 -0.35 2.57 16 30 H 0.39 9.12 6.06 -40.82 -0.25 8.87 16 31 H 0.28 6.72 8.31 -40.82 -0.34 6.39 16 LS Contribution 269.76 15.07 4.07 4.07 Total: -1.00 -28.44 269.76 -5.98 -34.42 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -3.31 Total: 10.03 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.26 Total: 5.29 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: 0.49 Total: -53.99 kcal Atomic # 8 Polarization: -14.57 SS G_CDS: 0.06 Total: -14.51 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -28.44 -5.98 -34.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464717632.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.588 kcal (2) G-P(sol) polarization free energy of solvation -28.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds