Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47430 * 2 1 4 4 C 1.36793 * 119.99918 * 262.79586 * 3 2 1 5 5 H 1.07995 * 120.00023 * 185.73820 * 4 3 2 6 6 C 1.39104 * 119.99835 * 5.74219 * 4 3 2 7 7 N 1.31325 * 119.99917 * 34.25891 * 6 4 3 8 8 Si 1.86794 * 120.00102 * 214.25512 * 6 4 3 9 9 H 1.48504 * 109.47043 * 94.99745 * 8 6 4 10 10 H 1.48501 * 109.47500 * 214.99992 * 8 6 4 11 11 H 1.48507 * 109.47091 * 335.00423 * 8 6 4 12 12 C 1.34777 * 119.99819 * 82.79832 * 3 2 1 13 13 O 1.21565 * 119.99454 * 183.46079 * 12 3 2 14 14 C 1.48019 * 120.00298 * 3.46463 * 12 3 2 15 15 C 1.39142 * 119.69697 * 173.03313 * 14 12 3 16 16 C 1.39404 * 118.94865 * 179.72089 * 15 14 12 17 17 N 1.39201 * 120.82607 * 180.25504 * 16 15 14 18 18 C 1.39456 * 118.34491 * 0.27114 * 16 15 14 19 19 C 1.38219 * 119.28324 * 0.02562 * 18 16 15 20 20 N 1.31656 * 120.99793 * 0.02562 * 19 18 16 21 21 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47035 * 300.00258 * 1 2 3 23 23 H 1.09002 * 109.46220 * 60.00224 * 1 2 3 24 24 H 1.09005 * 109.47223 * 239.99127 * 2 1 3 25 25 H 1.09007 * 109.46660 * 119.99942 * 2 1 3 26 26 H 0.97001 * 119.99782 * 180.02562 * 7 6 4 27 27 H 1.07993 * 120.52545 * 359.97438 * 15 14 12 28 28 H 0.96995 * 119.99650 * 0.02562 * 17 16 15 29 29 H 0.96998 * 119.99468 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.35778 * 179.97438 * 18 16 15 31 31 H 1.07995 * 119.50077 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3865 1.9765 -1.1753 5 1 2.8329 2.9598 -1.1659 6 6 2.1857 1.3152 -2.3826 7 7 1.1394 0.5372 -2.5389 8 14 3.4042 1.5341 -3.7813 9 1 4.3979 0.4310 -3.7493 10 1 2.6797 1.5103 -5.0774 11 1 4.1040 2.8351 -3.6292 12 6 2.1051 2.0652 1.1580 13 8 2.4503 3.2308 1.1509 14 6 1.7801 1.3973 2.4384 15 6 2.0100 2.0607 3.6397 16 6 1.6927 1.4193 4.8361 17 7 1.9016 2.0486 6.0600 18 6 1.1612 0.1314 4.7762 19 6 0.9679 -0.4636 3.5436 20 7 1.2782 0.1669 2.4303 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 0.9995 0.0758 -3.3807 27 1 2.4237 3.0582 3.6450 28 1 2.2718 2.9447 6.0876 29 1 1.6762 1.5913 6.8851 30 1 0.9042 -0.3957 5.6831 31 1 0.5569 -1.4610 3.4932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001519021649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = 32.315468 kcal Electronic energy + Delta-G solvation = -16648.409634 eV Core-core repulsion = 13931.098204 eV Total energy + Delta-G solvation = -2717.311430 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.88179 -37.86137 -35.14184 -34.86617 -31.93480 -30.57266 -29.49076 -29.00634 -25.49185 -23.23712 -22.58170 -21.85283 -19.58750 -17.32887 -16.87705 -16.49916 -15.76074 -15.16193 -14.61078 -14.35754 -14.07316 -13.68759 -13.52154 -13.02684 -12.63640 -12.40066 -11.88459 -11.32620 -11.29014 -11.14427 -11.00487 -10.65671 -10.33502 -10.13750 -9.70113 -8.85934 -8.67966 -8.55768 -8.14541 -7.81866 -7.60016 -6.52004 -3.69201 1.41553 1.96572 3.14050 3.25110 3.30901 3.83324 3.85762 4.10131 4.60721 4.81769 5.04724 5.17749 5.35621 5.47986 5.74829 5.97914 6.17679 6.39361 6.43837 6.66591 6.92188 6.93258 7.00514 7.29633 7.39530 7.47535 7.53835 7.76495 7.90105 8.11273 8.45454 8.63246 9.18743 9.44861 10.10561 10.47429 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.007443 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.667297 B = 3761.089681 C = 4230.496793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.109 3.891 3 N -0.394 5.394 4 C -0.312 4.312 5 H 0.110 0.890 6 C 0.042 3.958 7 N -0.824 5.824 8 Si 0.912 3.088 9 H -0.275 1.275 10 H -0.284 1.284 11 H -0.266 1.266 12 C 0.453 3.547 13 O -0.605 6.605 14 C 0.155 3.845 15 C -0.209 4.209 16 C 0.239 3.761 17 N -0.871 5.871 18 C -0.263 4.263 19 C 0.127 3.873 20 N -0.491 5.491 21 H 0.032 0.968 22 H 0.031 0.969 23 H 0.074 0.926 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.272 0.728 27 H 0.136 0.864 28 H 0.399 0.601 29 H 0.397 0.603 30 H 0.122 0.878 31 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -4.104 11.284 12.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.014 4.014 3 N -0.107 5.107 4 C -0.440 4.440 5 H 0.128 0.872 6 C -0.166 4.166 7 N -0.459 5.459 8 Si 0.738 3.262 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.190 1.190 12 C 0.243 3.757 13 O -0.493 6.493 14 C 0.018 3.982 15 C -0.236 4.236 16 C 0.128 3.872 17 N -0.411 5.411 18 C -0.290 4.290 19 C -0.031 4.031 20 N -0.206 5.206 21 H 0.052 0.948 22 H 0.050 0.950 23 H 0.092 0.908 24 H 0.092 0.908 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.154 0.846 28 H 0.228 0.772 29 H 0.225 0.775 30 H 0.140 0.860 31 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.588 -4.094 10.207 11.013 hybrid contribution 0.515 0.445 0.550 0.875 sum -0.074 -3.649 10.757 11.360 Atomic orbital electron populations 1.21820 0.96497 0.99273 1.01093 1.21962 0.95005 0.82668 1.01808 1.43888 1.49700 1.11736 1.05338 1.19872 1.37235 1.04359 0.82582 0.87188 1.25318 0.95944 0.96630 0.98749 1.70234 1.21586 1.27920 1.26162 0.86144 0.81169 0.79430 0.79501 1.20120 1.20947 1.18967 1.17336 0.89242 0.86425 0.82705 1.90573 1.56456 1.16226 1.86032 1.21414 0.92825 0.89562 0.94370 1.21407 1.08961 1.02695 0.90536 1.17886 0.91500 0.91548 0.86310 1.42293 1.73805 1.20241 1.04773 1.21483 1.11841 0.95897 0.99742 1.22595 0.93899 0.99140 0.87497 1.68507 1.14520 1.08700 1.28882 0.94849 0.94979 0.90752 0.90798 0.89453 0.91782 0.84634 0.77226 0.77538 0.86004 0.83313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.18 37.16 0.34 -2.60 16 2 C 0.11 2.62 4.88 -4.04 -0.02 2.60 16 3 N -0.39 -10.69 2.64 -115.83 -0.31 -10.99 16 4 C -0.31 -8.85 9.36 -15.02 -0.14 -8.99 16 5 H 0.11 3.28 7.37 -52.49 -0.39 2.90 16 6 C 0.04 1.10 4.66 -17.45 -0.08 1.02 16 7 N -0.82 -21.26 9.27 55.50 0.51 -20.75 16 8 Si 0.91 20.10 29.67 -169.99 -5.04 15.06 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 11 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 12 C 0.45 12.18 7.54 -12.25 -0.09 12.09 16 13 O -0.60 -17.87 15.93 5.31 0.08 -17.79 16 14 C 0.15 3.45 6.52 -83.06 -0.54 2.91 16 15 C -0.21 -4.02 9.52 -38.81 -0.37 -4.38 16 16 C 0.24 3.62 6.81 -83.63 -0.57 3.05 16 17 N -0.87 -9.28 9.08 32.52 0.30 -8.98 16 18 C -0.26 -3.69 10.00 -39.13 -0.39 -4.09 16 19 C 0.13 2.01 11.17 -17.63 -0.20 1.81 16 20 N -0.49 -9.79 4.36 -9.91 -0.04 -9.83 16 21 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.03 0.73 6.78 -51.93 -0.35 0.38 16 23 H 0.07 1.89 6.48 -51.93 -0.34 1.55 16 24 H 0.07 1.87 5.90 -51.93 -0.31 1.56 16 25 H 0.09 1.99 5.21 -52.65 -0.27 1.71 16 26 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 27 H 0.14 2.63 7.65 -52.49 -0.40 2.23 16 28 H 0.40 3.75 8.86 -40.82 -0.36 3.39 16 29 H 0.40 3.12 8.86 -40.82 -0.36 2.76 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 261.57 15.07 3.94 3.94 Total: -1.00 -31.75 261.57 -5.80 -37.55 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -3.18 Total: 8.38 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: -2.06 Total: 3.41 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.46 Total: -50.55 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.08 Total: -17.79 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.04 Total: 15.06 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.75 -5.80 -37.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519021649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.862 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds