Wall clock time and date at job start Sun Mar 29 2020 22:13:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47430 * 2 1 4 4 C 1.36793 * 119.99918 * 262.79586 * 3 2 1 5 5 H 1.07995 * 120.00023 * 185.73820 * 4 3 2 6 6 C 1.39104 * 119.99835 * 5.74219 * 4 3 2 7 7 N 1.31325 * 119.99917 * 34.25891 * 6 4 3 8 8 Si 1.86794 * 120.00102 * 214.25512 * 6 4 3 9 9 H 1.48504 * 109.47043 * 94.99745 * 8 6 4 10 10 H 1.48501 * 109.47500 * 214.99992 * 8 6 4 11 11 H 1.48507 * 109.47091 * 335.00423 * 8 6 4 12 12 C 1.34777 * 119.99819 * 82.79832 * 3 2 1 13 13 O 1.21565 * 119.99454 * 183.46079 * 12 3 2 14 14 C 1.48019 * 120.00298 * 3.46463 * 12 3 2 15 15 C 1.39142 * 119.69697 * 173.03313 * 14 12 3 16 16 C 1.39404 * 118.94865 * 179.72089 * 15 14 12 17 17 N 1.39201 * 120.82607 * 180.25504 * 16 15 14 18 18 C 1.39456 * 118.34491 * 0.27114 * 16 15 14 19 19 C 1.38219 * 119.28324 * 0.02562 * 18 16 15 20 20 N 1.31656 * 120.99793 * 0.02562 * 19 18 16 21 21 H 1.08995 * 109.47086 * 179.97438 * 1 2 3 22 22 H 1.08997 * 109.47035 * 300.00258 * 1 2 3 23 23 H 1.09002 * 109.46220 * 60.00224 * 1 2 3 24 24 H 1.09005 * 109.47223 * 239.99127 * 2 1 3 25 25 H 1.09007 * 109.46660 * 119.99942 * 2 1 3 26 26 H 0.97001 * 119.99782 * 180.02562 * 7 6 4 27 27 H 1.07993 * 120.52545 * 359.97438 * 15 14 12 28 28 H 0.96995 * 119.99650 * 0.02562 * 17 16 15 29 29 H 0.96998 * 119.99468 * 179.97438 * 17 16 15 30 30 H 1.08001 * 120.35778 * 179.97438 * 18 16 15 31 31 H 1.07995 * 119.50077 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3865 1.9765 -1.1753 5 1 2.8329 2.9598 -1.1659 6 6 2.1857 1.3152 -2.3826 7 7 1.1394 0.5372 -2.5389 8 14 3.4042 1.5341 -3.7813 9 1 4.3979 0.4310 -3.7493 10 1 2.6797 1.5103 -5.0774 11 1 4.1040 2.8351 -3.6292 12 6 2.1051 2.0652 1.1580 13 8 2.4503 3.2308 1.1509 14 6 1.7801 1.3973 2.4384 15 6 2.0100 2.0607 3.6397 16 6 1.6927 1.4193 4.8361 17 7 1.9016 2.0486 6.0600 18 6 1.1612 0.1314 4.7762 19 6 0.9679 -0.4636 3.5436 20 7 1.2782 0.1669 2.4303 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5138 -0.8901 24 1 1.8934 -0.5140 -0.8899 25 1 1.8933 -0.5139 0.8901 26 1 0.9995 0.0758 -3.3807 27 1 2.4237 3.0582 3.6450 28 1 2.2718 2.9447 6.0876 29 1 1.6762 1.5913 6.8851 30 1 0.9042 -0.3957 5.6831 31 1 0.5569 -1.4610 3.4932 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001519021649.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:44 Heat of formation + Delta-G solvation = 9.630637 kcal Electronic energy + Delta-G solvation = -16649.393322 eV Core-core repulsion = 13931.098204 eV Total energy + Delta-G solvation = -2718.295118 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.40956 -39.64656 -37.04459 -36.22566 -33.89076 -32.02817 -31.20734 -30.45632 -27.39838 -24.89704 -23.97026 -23.62407 -21.28405 -18.98522 -18.40371 -18.09473 -17.30157 -16.61586 -16.28835 -16.08723 -15.83544 -15.24850 -14.94309 -14.57610 -14.48323 -14.11894 -13.79375 -13.10639 -12.86052 -12.65058 -12.59553 -12.46987 -12.11644 -12.06454 -11.48576 -10.81620 -10.60959 -10.04047 -9.93300 -9.56186 -8.86480 -8.48417 -5.80957 -0.02279 0.66619 1.36982 1.42967 1.55344 2.09843 2.26139 2.79582 2.89821 3.13151 3.29049 3.61495 3.98325 4.16388 4.41369 4.59254 4.79819 4.87699 5.00826 5.08456 5.13163 5.18223 5.35426 5.40259 5.53813 5.73780 5.98484 6.10020 6.42950 6.48806 6.95176 7.09012 7.25618 7.46712 8.09461 8.50419 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.043289 B = 0.007443 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.667297 B = 3761.089681 C = 4230.496793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.116 3.884 3 N -0.408 5.408 4 C -0.370 4.370 5 H 0.075 0.925 6 C 0.018 3.982 7 N -0.836 5.836 8 Si 0.981 3.019 9 H -0.264 1.264 10 H -0.268 1.268 11 H -0.276 1.276 12 C 0.437 3.563 13 O -0.651 6.651 14 C 0.125 3.875 15 C -0.222 4.222 16 C 0.249 3.751 17 N -0.848 5.848 18 C -0.238 4.238 19 C 0.123 3.877 20 N -0.513 5.513 21 H 0.061 0.939 22 H 0.027 0.973 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.105 0.895 26 H 0.281 0.719 27 H 0.120 0.880 28 H 0.407 0.593 29 H 0.416 0.584 30 H 0.172 0.828 31 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.052 -6.383 13.528 14.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.006 4.006 3 N -0.121 5.121 4 C -0.497 4.497 5 H 0.093 0.907 6 C -0.190 4.190 7 N -0.470 5.470 8 Si 0.803 3.197 9 H -0.189 1.189 10 H -0.193 1.193 11 H -0.201 1.201 12 C 0.228 3.772 13 O -0.542 6.542 14 C -0.010 4.010 15 C -0.249 4.249 16 C 0.134 3.866 17 N -0.389 5.389 18 C -0.264 4.264 19 C -0.035 4.035 20 N -0.229 5.229 21 H 0.080 0.920 22 H 0.046 0.954 23 H 0.062 0.938 24 H 0.076 0.924 25 H 0.122 0.878 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.237 0.763 29 H 0.248 0.752 30 H 0.189 0.811 31 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -1.146 -6.403 12.497 14.088 hybrid contribution 0.604 1.123 0.145 1.283 sum -0.542 -5.280 12.642 13.711 Atomic orbital electron populations 1.21628 0.95600 1.00456 0.99299 1.22020 0.95598 0.81322 1.01690 1.44073 1.50206 1.12679 1.05143 1.19698 1.40928 1.04636 0.84458 0.90658 1.26038 0.96786 0.95929 1.00233 1.70261 1.21740 1.27810 1.27222 0.85152 0.78786 0.78987 0.76743 1.18890 1.19250 1.20084 1.18220 0.88221 0.86303 0.84441 1.90495 1.58123 1.18354 1.87268 1.20782 0.96140 0.91292 0.92796 1.21352 1.09731 1.02355 0.91507 1.17897 0.90420 0.91960 0.86276 1.42258 1.72157 1.20510 1.04004 1.21966 1.08579 0.94833 1.00989 1.23283 0.92949 1.00332 0.86955 1.68234 1.15365 1.07832 1.31518 0.91977 0.95350 0.93787 0.92449 0.87750 0.90843 0.86172 0.76323 0.75203 0.81106 0.79343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.14 9.18 71.98 0.66 -4.48 16 2 C 0.12 5.72 4.88 86.38 0.42 6.14 16 3 N -0.41 -23.39 2.64 -638.64 -1.68 -25.07 16 4 C -0.37 -22.33 9.36 84.13 0.79 -21.54 16 5 H 0.08 4.92 7.37 -2.91 -0.02 4.90 16 6 C 0.02 0.98 4.66 84.98 0.40 1.38 16 7 N -0.84 -43.96 9.27 21.69 0.20 -43.75 16 8 Si 0.98 42.32 29.67 68.60 2.04 44.36 16 9 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 10 H -0.27 -10.79 7.11 99.48 0.71 -10.09 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 C 0.44 24.94 7.54 86.84 0.65 25.59 16 13 O -0.65 -41.45 15.93 -3.92 -0.06 -41.51 16 14 C 0.13 5.70 6.52 41.80 0.27 5.97 16 15 C -0.22 -8.48 9.52 22.77 0.22 -8.26 16 16 C 0.25 6.70 6.81 38.55 0.26 6.96 16 17 N -0.85 -14.58 9.08 -51.02 -0.46 -15.05 16 18 C -0.24 -5.43 10.00 22.56 0.23 -5.20 16 19 C 0.12 3.37 11.17 84.71 0.95 4.32 16 20 N -0.51 -19.85 4.36 -185.25 -0.81 -20.66 16 21 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 22 H 0.03 1.29 6.78 -2.39 -0.02 1.27 16 23 H 0.04 2.27 6.48 -2.39 -0.02 2.26 16 24 H 0.06 2.96 5.90 -2.38 -0.01 2.95 16 25 H 0.11 4.76 5.21 -3.81 -0.02 4.74 16 26 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 27 H 0.12 4.85 7.65 -2.91 -0.02 4.82 16 28 H 0.41 6.37 8.86 -92.71 -0.82 5.55 16 29 H 0.42 4.29 8.86 -92.71 -0.82 3.47 16 30 H 0.17 2.32 8.06 -2.91 -0.02 2.29 16 31 H 0.19 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -75.27 261.57 3.60 -71.67 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -0.47 Total: 19.13 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.84 Total: 10.88 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -2.75 Total: -104.53 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -0.06 Total: -41.51 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.04 Total: 44.36 kcal Total: -75.27 3.60 -71.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001519021649.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.302 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds