Wall clock time and date at job start Sun Mar 29 2020 21:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33010 * 1 3 3 C 1.50702 * 119.99729 * 2 1 4 4 C 1.52997 * 109.47107 * 94.71892 * 3 2 1 5 5 C 1.47076 * 119.99985 * 179.72032 * 2 1 3 6 6 O 1.21637 * 120.00319 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99786 * 179.97438 * 5 2 1 8 8 C 1.40505 * 120.00218 * 179.97438 * 7 5 2 9 9 C 1.40672 * 126.08572 * 359.70015 * 8 7 5 10 10 N 1.30904 * 108.39056 * 179.87346 * 9 8 7 11 11 N 1.40064 * 108.40958 * 0.37742 * 10 9 8 12 12 C 1.37316 * 126.06960 * 179.75667 * 11 10 9 13 13 H 1.07999 * 120.00890 * 180.02562 * 12 11 10 14 14 C 1.38997 * 119.99642 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99686 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47600 * 119.99972 * 16 14 12 19 19 H 1.48502 * 109.46810 * 240.00089 * 16 14 12 20 20 C 1.35701 * 126.09228 * 180.02562 * 8 7 5 21 21 H 1.08001 * 120.00442 * 0.28291 * 1 2 3 22 22 H 1.07999 * 119.99842 * 180.27507 * 1 2 3 23 23 H 1.08998 * 109.46750 * 214.72539 * 3 2 1 24 24 H 1.09008 * 109.46949 * 334.71883 * 3 2 1 25 25 H 1.09004 * 109.46776 * 60.00345 * 4 3 2 26 26 H 1.09003 * 109.47006 * 179.97438 * 4 3 2 27 27 H 1.08993 * 109.47422 * 299.99837 * 4 3 2 28 28 H 0.96999 * 120.00047 * 0.02562 * 7 5 2 29 29 H 1.08007 * 125.80193 * 0.02562 * 9 8 7 30 30 H 0.97006 * 119.99419 * 179.97438 * 15 14 12 31 31 H 1.08004 * 126.24427 * 359.94179 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0835 1.3052 0.0000 4 6 2.4413 1.6875 1.4376 5 6 2.0655 -1.2737 0.0062 6 8 1.4573 -2.3271 0.0109 7 7 3.4132 -1.2737 0.0057 8 6 4.1159 -2.4904 0.0122 9 6 3.5457 -3.7763 0.0255 10 7 4.5139 -4.6574 0.0252 11 7 5.7355 -3.9722 0.0205 12 6 6.9836 -4.5447 0.0234 13 1 7.8645 -3.9199 0.0197 14 6 7.1133 -5.9286 0.0313 15 7 6.0425 -6.6882 0.0364 16 14 8.8111 -6.7075 0.0360 17 1 9.8448 -5.6414 0.0296 18 1 8.9690 -7.5433 1.2532 19 1 8.9693 -7.5570 -1.1717 20 6 5.4652 -2.6343 0.0129 21 1 -0.5401 0.9353 -0.0046 22 1 -0.5400 -0.9353 0.0045 23 1 2.9967 1.1975 -0.5854 24 1 1.4604 2.0844 -0.4389 25 1 3.0645 0.9082 1.8764 26 1 2.9867 2.6313 1.4375 27 1 1.5282 1.7952 2.0229 28 1 3.8982 -0.4336 0.0016 29 1 2.4889 -3.9989 0.0321 30 1 6.1330 -7.6540 0.0415 31 1 6.1925 -1.8359 0.0078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001520902793.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:05 Heat of formation + Delta-G solvation = 59.175884 kcal Electronic energy + Delta-G solvation = -15944.015272 eV Core-core repulsion = 13227.868598 eV Total energy + Delta-G solvation = -2716.146675 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.94637 -38.71565 -35.27235 -34.21647 -33.05900 -30.24206 -30.11646 -27.82900 -25.09318 -23.75245 -22.55061 -20.84296 -19.46591 -18.72526 -17.32550 -16.58138 -15.45229 -15.31096 -14.55279 -14.42808 -13.92708 -13.78470 -13.47511 -13.14886 -12.89648 -12.66548 -12.19723 -11.66482 -11.44970 -11.28239 -11.26598 -10.99674 -10.89905 -10.49685 -10.14404 -9.30548 -9.15233 -9.13874 -8.77985 -8.02999 -6.65498 -6.53939 -4.20340 1.59233 2.95674 3.06237 3.12259 3.40541 3.68435 3.83824 3.92507 4.50236 4.73185 4.76310 4.99514 5.04175 5.21066 5.26012 5.52907 5.65375 5.76503 5.89659 6.12963 6.26325 6.38459 6.47160 6.58013 6.94958 7.01023 7.17620 7.27805 7.88615 8.23435 8.32635 8.66734 8.92140 9.40504 9.69842 10.42211 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.057111 B = 0.005306 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.157908 B = 5275.519114 C = 5677.955867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.166 4.166 3 C -0.090 4.090 4 C -0.151 4.151 5 C 0.533 3.467 6 O -0.540 6.540 7 N -0.618 5.618 8 C -0.060 4.060 9 C -0.032 4.032 10 N -0.261 5.261 11 N -0.143 5.143 12 C -0.323 4.323 13 H 0.117 0.883 14 C 0.046 3.954 15 N -0.770 5.770 16 Si 0.935 3.065 17 H -0.263 1.263 18 H -0.274 1.274 19 H -0.274 1.274 20 C -0.084 4.084 21 H 0.109 0.891 22 H 0.115 0.885 23 H 0.071 0.929 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.396 0.604 29 H 0.176 0.824 30 H 0.274 0.726 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.478 13.626 0.473 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.169 4.169 3 C -0.127 4.127 4 C -0.208 4.208 5 C 0.321 3.679 6 O -0.419 6.419 7 N -0.260 5.260 8 C -0.166 4.166 9 C -0.208 4.208 10 N -0.092 5.092 11 N 0.089 4.911 12 C -0.455 4.455 13 H 0.134 0.866 14 C -0.171 4.171 15 N -0.397 5.397 16 Si 0.759 3.241 17 H -0.187 1.187 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.235 4.235 21 H 0.127 0.873 22 H 0.133 0.867 23 H 0.090 0.910 24 H 0.093 0.907 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.230 0.770 29 H 0.193 0.807 30 H 0.085 0.915 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -3.655 11.383 0.484 11.965 hybrid contribution 0.829 1.075 -0.014 1.357 sum -2.826 12.458 0.470 12.783 Atomic orbital electron populations 1.24488 0.94586 1.02871 0.93420 1.21708 0.95791 0.94084 1.05344 1.20608 1.00189 0.93948 0.97997 1.21795 1.01869 1.01463 0.95717 1.18237 0.81912 0.89105 0.78690 1.90673 1.68048 1.32478 1.50727 1.42483 1.05527 1.07273 1.70681 1.17304 0.90128 0.85625 1.23556 1.24129 0.99826 0.88966 1.07864 1.78247 0.87224 1.17998 1.25716 1.44551 1.05540 1.01798 1.39166 1.19920 0.80888 0.91350 1.53383 0.86584 1.25647 0.99614 0.96346 0.95506 1.70235 1.28515 1.05467 1.35450 0.85764 0.80433 0.79470 0.78467 1.18700 1.19917 1.19920 1.21259 0.94181 0.88025 1.20077 0.87271 0.86710 0.91017 0.90726 0.92170 0.92249 0.92467 0.76956 0.80710 0.91531 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 13.90 28.92 0.40 -0.95 16 2 C -0.17 -2.23 5.25 -102.85 -0.54 -2.77 16 3 C -0.09 -0.89 5.55 -27.88 -0.15 -1.04 16 4 C -0.15 -1.40 9.89 37.16 0.37 -1.03 16 5 C 0.53 9.95 7.72 -12.68 -0.10 9.85 16 6 O -0.54 -12.23 13.36 5.24 0.07 -12.16 16 7 N -0.62 -11.58 5.41 -11.08 -0.06 -11.64 16 8 C -0.06 -1.44 6.90 -83.87 -0.58 -2.02 16 9 C -0.03 -0.88 10.85 -17.03 -0.18 -1.06 16 10 N -0.26 -7.76 10.39 30.81 0.32 -7.44 16 11 N -0.14 -4.00 3.74 -11.40 -0.04 -4.04 16 12 C -0.32 -8.67 10.25 -14.81 -0.15 -8.82 16 13 H 0.12 2.78 7.83 -52.49 -0.41 2.37 16 14 C 0.05 1.20 5.50 -17.50 -0.10 1.10 16 15 N -0.77 -21.82 11.81 55.50 0.66 -21.16 16 16 Si 0.93 19.10 29.55 -169.99 -5.02 14.08 16 17 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 19 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 20 C -0.08 -2.04 11.49 -16.39 -0.19 -2.22 16 21 H 0.11 0.91 8.02 -52.49 -0.42 0.49 16 22 H 0.11 1.51 7.49 -52.49 -0.39 1.12 16 23 H 0.07 0.68 6.95 -51.93 -0.36 0.32 16 24 H 0.07 0.59 8.01 -51.92 -0.42 0.18 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.40 5.88 7.03 -40.82 -0.29 5.59 16 29 H 0.18 4.74 5.91 -52.48 -0.31 4.43 16 30 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.15 2.90 8.06 -52.48 -0.42 2.47 16 LS Contribution 274.95 15.07 4.14 4.14 Total: -1.00 -33.58 274.95 -4.58 -38.16 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -3.43 Total: 9.04 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -1.22 Total: -8.97 kcal Atomic # 7 Polarization: -45.16 SS G_CDS: 0.87 Total: -44.29 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -33.58 -4.58 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520902793.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.338 kcal (2) G-P(sol) polarization free energy of solvation -33.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds