Wall clock time and date at job start Sun Mar 29 2020 21:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33010 * 1 3 3 C 1.50702 * 119.99729 * 2 1 4 4 C 1.52997 * 109.47107 * 94.71892 * 3 2 1 5 5 C 1.47076 * 119.99985 * 179.72032 * 2 1 3 6 6 O 1.21637 * 120.00319 * 0.02562 * 5 2 1 7 7 N 1.34777 * 119.99786 * 179.97438 * 5 2 1 8 8 C 1.40505 * 120.00218 * 179.97438 * 7 5 2 9 9 C 1.40672 * 126.08572 * 359.70015 * 8 7 5 10 10 N 1.30904 * 108.39056 * 179.87346 * 9 8 7 11 11 N 1.40064 * 108.40958 * 0.37742 * 10 9 8 12 12 C 1.37316 * 126.06960 * 179.75667 * 11 10 9 13 13 H 1.07999 * 120.00890 * 180.02562 * 12 11 10 14 14 C 1.38997 * 119.99642 * 0.02562 * 12 11 10 15 15 N 1.31295 * 119.99686 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00105 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.46922 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.47600 * 119.99972 * 16 14 12 19 19 H 1.48502 * 109.46810 * 240.00089 * 16 14 12 20 20 C 1.35701 * 126.09228 * 180.02562 * 8 7 5 21 21 H 1.08001 * 120.00442 * 0.28291 * 1 2 3 22 22 H 1.07999 * 119.99842 * 180.27507 * 1 2 3 23 23 H 1.08998 * 109.46750 * 214.72539 * 3 2 1 24 24 H 1.09008 * 109.46949 * 334.71883 * 3 2 1 25 25 H 1.09004 * 109.46776 * 60.00345 * 4 3 2 26 26 H 1.09003 * 109.47006 * 179.97438 * 4 3 2 27 27 H 1.08993 * 109.47422 * 299.99837 * 4 3 2 28 28 H 0.96999 * 120.00047 * 0.02562 * 7 5 2 29 29 H 1.08007 * 125.80193 * 0.02562 * 9 8 7 30 30 H 0.97006 * 119.99419 * 179.97438 * 15 14 12 31 31 H 1.08004 * 126.24427 * 359.94179 * 20 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0835 1.3052 0.0000 4 6 2.4413 1.6875 1.4376 5 6 2.0655 -1.2737 0.0062 6 8 1.4573 -2.3271 0.0109 7 7 3.4132 -1.2737 0.0057 8 6 4.1159 -2.4904 0.0122 9 6 3.5457 -3.7763 0.0255 10 7 4.5139 -4.6574 0.0252 11 7 5.7355 -3.9722 0.0205 12 6 6.9836 -4.5447 0.0234 13 1 7.8645 -3.9199 0.0197 14 6 7.1133 -5.9286 0.0313 15 7 6.0425 -6.6882 0.0364 16 14 8.8111 -6.7075 0.0360 17 1 9.8448 -5.6414 0.0296 18 1 8.9690 -7.5433 1.2532 19 1 8.9693 -7.5570 -1.1717 20 6 5.4652 -2.6343 0.0129 21 1 -0.5401 0.9353 -0.0046 22 1 -0.5400 -0.9353 0.0045 23 1 2.9967 1.1975 -0.5854 24 1 1.4604 2.0844 -0.4389 25 1 3.0645 0.9082 1.8764 26 1 2.9867 2.6313 1.4375 27 1 1.5282 1.7952 2.0229 28 1 3.8982 -0.4336 0.0016 29 1 2.4889 -3.9989 0.0321 30 1 6.1330 -7.6540 0.0415 31 1 6.1925 -1.8359 0.0078 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001520902793.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:05 Heat of formation + Delta-G solvation = 35.689259 kcal Electronic energy + Delta-G solvation = -15945.033729 eV Core-core repulsion = 13227.868598 eV Total energy + Delta-G solvation = -2717.165131 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.75647 -40.38452 -36.33924 -35.97939 -34.88681 -32.24928 -31.02434 -29.71795 -26.99192 -24.83897 -23.76578 -22.79831 -21.33119 -20.22352 -19.11647 -17.80419 -17.39946 -16.95698 -16.11086 -15.91912 -15.28997 -15.12721 -14.94828 -14.82486 -14.30788 -13.68846 -13.47384 -13.33057 -13.01895 -12.92805 -12.86710 -12.16412 -12.02466 -11.89473 -11.75781 -11.03834 -10.85722 -10.68046 -10.31322 -10.11434 -8.53740 -8.48099 -6.25479 0.45628 1.28503 1.39976 1.59509 1.72928 2.06004 2.10432 2.34849 2.66838 2.92277 3.08407 3.85322 3.92563 4.32982 4.41967 4.54109 4.58117 4.75584 4.84877 4.98250 5.00683 5.09963 5.16792 5.27302 5.40871 5.46968 5.47927 5.63561 5.95061 6.30121 6.71953 6.75477 7.38096 7.45578 7.66079 8.51771 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.057111 B = 0.005306 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 490.157908 B = 5275.519114 C = 5677.955867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.184 4.184 3 C -0.083 4.083 4 C -0.151 4.151 5 C 0.526 3.474 6 O -0.588 6.588 7 N -0.610 5.610 8 C -0.049 4.049 9 C -0.061 4.061 10 N -0.310 5.310 11 N -0.166 5.166 12 C -0.354 4.354 13 H 0.143 0.857 14 C -0.007 4.007 15 N -0.826 5.826 16 Si 1.021 2.979 17 H -0.239 1.239 18 H -0.272 1.272 19 H -0.272 1.272 20 C -0.081 4.081 21 H 0.156 0.844 22 H 0.094 0.906 23 H 0.074 0.926 24 H 0.105 0.895 25 H 0.038 0.962 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.417 0.583 29 H 0.165 0.835 30 H 0.277 0.723 31 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.392 16.575 0.381 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.187 4.187 3 C -0.120 4.120 4 C -0.208 4.208 5 C 0.317 3.683 6 O -0.471 6.471 7 N -0.254 5.254 8 C -0.155 4.155 9 C -0.236 4.236 10 N -0.143 5.143 11 N 0.065 4.935 12 C -0.485 4.485 13 H 0.160 0.840 14 C -0.219 4.219 15 N -0.454 5.454 16 Si 0.840 3.160 17 H -0.162 1.162 18 H -0.198 1.198 19 H -0.198 1.198 20 C -0.231 4.231 21 H 0.174 0.826 22 H 0.112 0.888 23 H 0.093 0.907 24 H 0.123 0.877 25 H 0.057 0.943 26 H 0.099 0.901 27 H 0.079 0.921 28 H 0.256 0.744 29 H 0.182 0.818 30 H 0.086 0.914 31 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -2.575 14.411 0.393 14.644 hybrid contribution 0.311 0.267 0.018 0.410 sum -2.264 14.678 0.411 14.857 Atomic orbital electron populations 1.24828 0.94056 1.04125 0.89878 1.21682 0.96147 0.92953 1.07907 1.20651 1.00414 0.92385 0.98553 1.21808 1.01970 1.01739 0.95263 1.19288 0.81743 0.90634 0.76679 1.90653 1.68891 1.34922 1.52593 1.42437 1.05793 1.06404 1.70812 1.17414 0.90369 0.86460 1.21239 1.24146 0.99259 0.90726 1.09479 1.78140 0.88616 1.19937 1.27570 1.44860 1.05388 1.03039 1.40250 1.20706 0.81331 0.92539 1.53922 0.83994 1.26925 1.04307 0.96592 0.94049 1.70417 1.31730 1.05905 1.37327 0.84507 0.74738 0.78542 0.78209 1.16200 1.19753 1.19752 1.21995 0.95112 0.87837 1.18194 0.82598 0.88809 0.90705 0.87703 0.94276 0.90133 0.92103 0.74449 0.81792 0.91372 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.89 13.90 66.65 0.93 -0.96 16 2 C -0.18 -4.54 5.25 -18.71 -0.10 -4.64 16 3 C -0.08 -1.32 5.55 29.85 0.17 -1.16 16 4 C -0.15 -2.29 9.89 71.98 0.71 -1.58 16 5 C 0.53 19.57 7.72 86.56 0.67 20.24 16 6 O -0.59 -27.62 13.36 -4.15 -0.06 -27.67 16 7 N -0.61 -22.47 5.41 -307.20 -1.66 -24.13 16 8 C -0.05 -2.34 6.90 37.76 0.26 -2.08 16 9 C -0.06 -3.49 10.85 85.43 0.93 -2.56 16 10 N -0.31 -19.35 10.39 -56.45 -0.59 -19.94 16 11 N -0.17 -9.47 3.74 -189.99 -0.71 -10.18 16 12 C -0.35 -19.02 10.25 84.02 0.86 -18.16 16 13 H 0.14 6.58 7.83 -2.91 -0.02 6.56 16 14 C -0.01 -0.38 5.50 84.96 0.47 0.08 16 15 N -0.83 -48.55 11.81 21.66 0.26 -48.30 16 16 Si 1.02 38.94 29.55 68.60 2.03 40.97 16 17 H -0.24 -8.11 7.11 99.48 0.71 -7.40 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 20 C -0.08 -3.86 11.49 83.38 0.96 -2.91 16 21 H 0.16 1.81 8.02 -2.91 -0.02 1.78 16 22 H 0.09 2.38 7.49 -2.91 -0.02 2.36 16 23 H 0.07 1.15 6.95 -2.39 -0.02 1.14 16 24 H 0.10 1.11 8.01 -2.38 -0.02 1.09 16 25 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.42 11.57 7.03 -92.71 -0.65 10.92 16 29 H 0.17 9.54 5.91 -2.91 -0.02 9.53 16 30 H 0.28 14.88 8.31 -92.70 -0.77 14.11 16 31 H 0.19 7.02 8.06 -2.91 -0.02 7.00 16 Total: -1.00 -78.06 274.95 5.61 -72.45 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: 0.50 Total: 30.53 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 5.85 Total: -13.72 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -2.70 Total: -102.55 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.06 Total: -27.67 kcal Atomic # 14 Polarization: 38.94 SS G_CDS: 2.03 Total: 40.97 kcal Total: -78.06 5.61 -72.45 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001520902793.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.139 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds