Wall clock time and date at job start Sun Mar 29 2020 22:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46835 * 2 1 4 4 N 1.46896 * 109.47227 * 240.00243 * 2 1 3 5 5 C 1.50692 * 109.47210 * 119.99979 * 2 1 3 6 6 O 1.21267 * 120.00045 * 100.69669 * 5 2 1 7 7 N 1.34783 * 120.00110 * 280.69370 * 5 2 1 8 8 C 1.37207 * 119.99892 * 356.90552 * 7 5 2 9 9 H 1.08006 * 119.99832 * 309.11647 * 8 7 5 10 10 C 1.38889 * 120.00393 * 129.12152 * 8 7 5 11 11 N 1.31412 * 120.00522 * 157.37948 * 10 8 7 12 12 Si 1.86804 * 119.99455 * 337.38164 * 10 8 7 13 13 H 1.48504 * 109.47365 * 92.58822 * 12 10 8 14 14 H 1.48502 * 109.46917 * 212.58224 * 12 10 8 15 15 H 1.48497 * 109.47408 * 332.58416 * 12 10 8 16 16 C 1.39426 * 119.99670 * 176.90649 * 7 5 2 17 17 C 1.39062 * 119.70125 * 15.53576 * 16 7 5 18 18 C 1.38385 * 119.09705 * 179.97438 * 17 16 7 19 19 C 1.38828 * 118.49395 * 0.02562 * 18 17 16 20 20 C 1.38147 * 119.30767 * 359.97438 * 19 18 17 21 21 N 1.31873 * 120.85355 * 359.74684 * 20 19 18 22 22 H 1.09005 * 109.47255 * 182.28392 * 1 2 3 23 23 H 1.09002 * 109.47148 * 302.28137 * 1 2 3 24 24 H 1.08996 * 109.47830 * 62.28426 * 1 2 3 25 25 H 1.00896 * 111.00675 * 174.51314 * 4 2 1 26 26 H 1.00903 * 110.99797 * 298.47089 * 4 2 1 27 27 H 0.97000 * 119.99832 * 179.97438 * 11 10 8 28 28 H 1.07996 * 120.45099 * 359.96139 * 17 16 7 29 29 H 1.08001 * 120.75187 * 180.02562 * 18 17 16 30 30 H 1.07993 * 120.34463 * 180.02562 * 19 18 17 31 31 H 1.07996 * 119.56842 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0323 -0.7104 1.2304 6 8 2.4182 -1.8574 1.1532 7 7 2.0528 -0.0708 2.4167 8 6 1.6763 1.2464 2.4925 9 1 2.1104 1.9716 1.8201 10 6 0.7371 1.6472 3.4339 11 7 0.6909 2.9014 3.8233 12 14 -0.4605 0.4032 4.1465 13 1 0.1029 -0.1662 5.3970 14 1 -1.7512 1.0739 4.4458 15 1 -0.6853 -0.6869 3.1636 16 6 2.4565 -0.7479 3.5667 17 6 3.1361 -1.9558 3.4523 18 6 3.5315 -2.6169 4.6020 19 6 3.2319 -2.0452 5.8311 20 6 2.5537 -0.8422 5.8700 21 7 2.1942 -0.2322 4.7575 22 1 -0.3634 -1.0269 0.0410 23 1 -0.3633 0.5489 0.8688 24 1 -0.3634 0.4779 -0.9097 25 1 3.0242 -0.6286 -1.2691 26 1 1.7168 -1.6549 -1.2103 27 1 0.0346 3.1813 4.4805 28 1 3.3521 -2.3723 2.4796 29 1 4.0611 -3.5564 4.5443 30 1 3.5267 -2.5352 6.7471 31 1 2.3189 -0.3935 6.8238 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573553502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:26 Heat of formation + Delta-G solvation = 31.475242 kcal Electronic energy + Delta-G solvation = -17140.079871 eV Core-core repulsion = 14422.732006 eV Total energy + Delta-G solvation = -2717.347865 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.40086 -38.55128 -35.26873 -34.43581 -32.12013 -31.67038 -29.73518 -28.30781 -25.27745 -23.99075 -22.66643 -21.53174 -19.30828 -18.21547 -16.95788 -15.93050 -15.73909 -15.46149 -14.77809 -14.49508 -14.42117 -13.81865 -13.27957 -13.17903 -12.84129 -12.62127 -12.27451 -11.77548 -11.47570 -11.35402 -11.04878 -10.74858 -10.68257 -10.13522 -9.78241 -9.30443 -8.96388 -8.67602 -8.41969 -8.21037 -7.40197 -6.46035 -4.33311 1.75638 1.96653 3.19626 3.34640 3.39142 3.41031 3.87170 4.31197 4.67746 4.88238 5.02338 5.32724 5.36209 5.51383 5.69438 5.72543 5.87095 5.89391 6.06359 6.32265 6.47775 6.54666 6.65231 6.75963 6.88927 7.03577 7.37458 7.58375 7.76075 7.86196 8.12902 8.46882 8.92826 9.20269 9.35985 10.59002 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.014750 C = 0.009884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.187115 B = 1897.827218 C = 2832.294731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.093 3.907 3 H 0.112 0.888 4 N -0.826 5.826 5 C 0.465 3.535 6 O -0.570 6.570 7 N -0.385 5.385 8 C -0.388 4.388 9 H 0.106 0.894 10 C 0.123 3.877 11 N -0.844 5.844 12 Si 0.891 3.109 13 H -0.254 1.254 14 H -0.297 1.297 15 H -0.279 1.279 16 C 0.346 3.654 17 C -0.215 4.215 18 C -0.070 4.070 19 C -0.226 4.226 20 C 0.118 3.882 21 N -0.481 5.481 22 H 0.046 0.954 23 H 0.078 0.922 24 H 0.067 0.933 25 H 0.338 0.662 26 H 0.342 0.658 27 H 0.276 0.724 28 H 0.177 0.823 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.645 -6.615 -0.703 6.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.022 4.022 3 H 0.129 0.871 4 N -0.353 5.353 5 C 0.255 3.745 6 O -0.454 6.454 7 N -0.096 5.096 8 C -0.512 4.512 9 H 0.123 0.877 10 C -0.090 4.090 11 N -0.476 5.476 12 Si 0.719 3.281 13 H -0.180 1.180 14 H -0.225 1.225 15 H -0.204 1.204 16 C 0.117 3.883 17 C -0.238 4.238 18 C -0.096 4.096 19 C -0.247 4.247 20 C -0.041 4.041 21 N -0.196 5.196 22 H 0.065 0.935 23 H 0.097 0.903 24 H 0.086 0.914 25 H 0.150 0.850 26 H 0.155 0.845 27 H 0.086 0.914 28 H 0.193 0.807 29 H 0.142 0.858 30 H 0.140 0.860 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.851 -5.611 -1.112 5.783 hybrid contribution 0.355 -1.763 1.463 2.319 sum 1.206 -7.374 0.352 7.481 Atomic orbital electron populations 1.21608 0.92389 1.01697 1.03234 1.21245 0.97339 0.99111 0.84523 0.87050 1.59299 1.17094 1.21066 1.37865 1.22430 0.79098 0.86130 0.86833 1.90291 1.50688 1.18545 1.85836 1.41467 1.53364 1.11573 1.03168 1.18807 1.27100 0.80524 1.24803 0.87661 1.25154 0.95521 0.95319 0.93052 1.69790 1.32973 1.17365 1.27431 0.86710 0.78485 0.81548 0.81344 1.17961 1.22517 1.20403 1.19174 0.91313 0.90034 0.87795 1.23156 1.01260 0.96992 1.02353 1.21411 0.97087 0.98841 0.92299 1.21833 1.05732 0.98919 0.98262 1.22342 0.93990 0.91874 0.95889 1.67256 1.20372 1.34527 0.97487 0.93524 0.90343 0.91427 0.85009 0.84459 0.91395 0.80690 0.85820 0.86030 0.83696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 9.41 37.16 0.35 -2.02 16 2 C 0.09 1.74 3.07 -68.87 -0.21 1.53 16 3 H 0.11 2.14 6.90 -51.93 -0.36 1.78 16 4 N -0.83 -13.17 8.99 -5.66 -0.05 -13.22 16 5 C 0.46 10.27 6.81 -10.99 -0.07 10.19 16 6 O -0.57 -12.75 12.72 5.57 0.07 -12.68 16 7 N -0.38 -9.41 2.15 -60.71 -0.13 -9.54 16 8 C -0.39 -10.08 7.64 -14.90 -0.11 -10.20 16 9 H 0.11 2.83 7.29 -52.48 -0.38 2.44 16 10 C 0.12 3.27 4.72 -17.49 -0.08 3.19 16 11 N -0.84 -23.35 13.96 55.49 0.77 -22.58 16 12 Si 0.89 22.10 25.33 -169.99 -4.31 17.79 16 13 H -0.25 -6.26 5.63 56.52 0.32 -5.94 16 14 H -0.30 -7.23 7.11 56.52 0.40 -6.83 16 15 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 16 C 0.35 8.37 6.13 -154.64 -0.95 7.42 16 17 C -0.22 -4.62 8.96 -39.22 -0.35 -4.97 16 18 C -0.07 -1.26 10.17 -39.31 -0.40 -1.66 16 19 C -0.23 -3.88 10.11 -39.40 -0.40 -4.28 16 20 C 0.12 2.36 10.56 -17.57 -0.19 2.17 16 21 N -0.48 -11.62 5.30 -12.34 -0.07 -11.68 16 22 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.08 1.58 7.30 -51.93 -0.38 1.20 16 24 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 25 H 0.34 5.04 9.07 -39.29 -0.36 4.68 16 26 H 0.34 5.38 8.54 -39.29 -0.34 5.04 16 27 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 28 H 0.18 3.81 4.87 -54.52 -0.27 3.54 16 29 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.15 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 258.62 15.07 3.90 3.90 Total: -1.00 -29.28 258.62 -5.64 -34.92 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -3.41 Total: 11.72 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -2.42 Total: 1.38 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: 0.53 Total: -57.02 kcal Atomic # 8 Polarization: -12.75 SS G_CDS: 0.07 Total: -12.68 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.31 Total: 17.79 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -29.28 -5.64 -34.92 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573553502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.392 kcal (2) G-P(sol) polarization free energy of solvation -29.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds