Wall clock time and date at job start Sun Mar 29 2020 22:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.46835 * 2 1 4 4 N 1.46896 * 109.47227 * 240.00243 * 2 1 3 5 5 C 1.50692 * 109.47210 * 119.99979 * 2 1 3 6 6 O 1.21267 * 120.00045 * 100.69669 * 5 2 1 7 7 N 1.34783 * 120.00110 * 280.69370 * 5 2 1 8 8 C 1.37207 * 119.99892 * 356.90552 * 7 5 2 9 9 H 1.08006 * 119.99832 * 309.11647 * 8 7 5 10 10 C 1.38889 * 120.00393 * 129.12152 * 8 7 5 11 11 N 1.31412 * 120.00522 * 157.37948 * 10 8 7 12 12 Si 1.86804 * 119.99455 * 337.38164 * 10 8 7 13 13 H 1.48504 * 109.47365 * 92.58822 * 12 10 8 14 14 H 1.48502 * 109.46917 * 212.58224 * 12 10 8 15 15 H 1.48497 * 109.47408 * 332.58416 * 12 10 8 16 16 C 1.39426 * 119.99670 * 176.90649 * 7 5 2 17 17 C 1.39062 * 119.70125 * 15.53576 * 16 7 5 18 18 C 1.38385 * 119.09705 * 179.97438 * 17 16 7 19 19 C 1.38828 * 118.49395 * 0.02562 * 18 17 16 20 20 C 1.38147 * 119.30767 * 359.97438 * 19 18 17 21 21 N 1.31873 * 120.85355 * 359.74684 * 20 19 18 22 22 H 1.09005 * 109.47255 * 182.28392 * 1 2 3 23 23 H 1.09002 * 109.47148 * 302.28137 * 1 2 3 24 24 H 1.08996 * 109.47830 * 62.28426 * 1 2 3 25 25 H 1.00896 * 111.00675 * 174.51314 * 4 2 1 26 26 H 1.00903 * 110.99797 * 298.47089 * 4 2 1 27 27 H 0.97000 * 119.99832 * 179.97438 * 11 10 8 28 28 H 1.07996 * 120.45099 * 359.96139 * 17 16 7 29 29 H 1.08001 * 120.75187 * 180.02562 * 18 17 16 30 30 H 1.07993 * 120.34463 * 180.02562 * 19 18 17 31 31 H 1.07996 * 119.56842 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1994 5 6 2.0323 -0.7104 1.2304 6 8 2.4182 -1.8574 1.1532 7 7 2.0528 -0.0708 2.4167 8 6 1.6763 1.2464 2.4925 9 1 2.1104 1.9716 1.8201 10 6 0.7371 1.6472 3.4339 11 7 0.6909 2.9014 3.8233 12 14 -0.4605 0.4032 4.1465 13 1 0.1029 -0.1662 5.3970 14 1 -1.7512 1.0739 4.4458 15 1 -0.6853 -0.6869 3.1636 16 6 2.4565 -0.7479 3.5667 17 6 3.1361 -1.9558 3.4523 18 6 3.5315 -2.6169 4.6020 19 6 3.2319 -2.0452 5.8311 20 6 2.5537 -0.8422 5.8700 21 7 2.1942 -0.2322 4.7575 22 1 -0.3634 -1.0269 0.0410 23 1 -0.3633 0.5489 0.8688 24 1 -0.3634 0.4779 -0.9097 25 1 3.0242 -0.6286 -1.2691 26 1 1.7168 -1.6549 -1.2103 27 1 0.0346 3.1813 4.4805 28 1 3.3521 -2.3723 2.4796 29 1 4.0611 -3.5564 4.5443 30 1 3.5267 -2.5352 6.7471 31 1 2.3189 -0.3935 6.8238 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573553502.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:25 Heat of formation + Delta-G solvation = 11.093953 kcal Electronic energy + Delta-G solvation = -17140.963670 eV Core-core repulsion = 14422.732006 eV Total energy + Delta-G solvation = -2718.231664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.07177 -40.15436 -37.02941 -35.93717 -34.09626 -33.23539 -31.29559 -29.74798 -27.18073 -25.56884 -24.24191 -23.10937 -21.08618 -19.93853 -18.60332 -17.74589 -17.21816 -16.92348 -16.44343 -16.23249 -16.13495 -15.49298 -14.89745 -14.80902 -14.50023 -14.36611 -13.85878 -13.40245 -13.13235 -12.92220 -12.77153 -12.48387 -12.27092 -12.05718 -11.48540 -10.85969 -10.70879 -10.48914 -10.06783 -9.74150 -9.10299 -8.49459 -6.35447 0.19708 0.43431 1.27851 1.36972 1.40270 1.66600 2.21209 2.33748 2.91915 3.08902 3.58038 3.81209 3.84708 4.07571 4.22460 4.29283 4.35791 4.41745 4.55181 4.89661 4.96065 5.04098 5.15754 5.27212 5.39586 5.41728 5.85262 5.92284 6.02863 6.22449 6.47795 6.72816 7.04062 7.40204 7.53897 8.58797 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.020856 B = 0.014750 C = 0.009884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1342.187115 B = 1897.827218 C = 2832.294731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.098 3.902 3 H 0.104 0.896 4 N -0.810 5.810 5 C 0.460 3.540 6 O -0.576 6.576 7 N -0.402 5.402 8 C -0.378 4.378 9 H 0.085 0.915 10 C 0.097 3.903 11 N -0.881 5.881 12 Si 0.935 3.065 13 H -0.251 1.251 14 H -0.295 1.295 15 H -0.293 1.293 16 C 0.307 3.693 17 C -0.230 4.230 18 C -0.061 4.061 19 C -0.200 4.200 20 C 0.097 3.903 21 N -0.522 5.522 22 H 0.049 0.951 23 H 0.052 0.948 24 H 0.092 0.908 25 H 0.346 0.654 26 H 0.347 0.653 27 H 0.279 0.721 28 H 0.169 0.831 29 H 0.167 0.833 30 H 0.172 0.828 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.235 -8.641 0.069 8.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.017 4.017 3 H 0.122 0.878 4 N -0.339 5.339 5 C 0.250 3.750 6 O -0.460 6.460 7 N -0.115 5.115 8 C -0.503 4.503 9 H 0.103 0.897 10 C -0.113 4.113 11 N -0.514 5.514 12 Si 0.763 3.237 13 H -0.177 1.177 14 H -0.223 1.223 15 H -0.219 1.219 16 C 0.080 3.920 17 C -0.252 4.252 18 C -0.087 4.087 19 C -0.221 4.221 20 C -0.061 4.061 21 N -0.238 5.238 22 H 0.068 0.932 23 H 0.071 0.929 24 H 0.111 0.889 25 H 0.159 0.841 26 H 0.161 0.839 27 H 0.089 0.911 28 H 0.186 0.814 29 H 0.185 0.815 30 H 0.189 0.811 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.454 -7.655 -0.338 7.799 hybrid contribution 0.311 -1.254 1.267 1.809 sum 1.765 -8.909 0.929 9.129 Atomic orbital electron populations 1.21567 0.91783 1.01751 1.03335 1.21217 0.97764 0.98675 0.84068 0.87814 1.59264 1.17743 1.21192 1.35681 1.23019 0.78533 0.86339 0.87066 1.90273 1.50893 1.18760 1.86036 1.41561 1.54515 1.11139 1.04241 1.18612 1.26379 0.81319 1.23975 0.89699 1.25530 0.96360 0.95957 0.93407 1.69835 1.34247 1.18470 1.28889 0.86032 0.77292 0.79811 0.80548 1.17656 1.22288 1.21883 1.19470 0.93385 0.91368 0.87780 1.23193 1.01787 0.96593 1.03654 1.21920 0.95792 0.99793 0.91225 1.22319 1.02610 0.97222 0.99953 1.22958 0.94342 0.93173 0.95660 1.67140 1.22038 1.36144 0.98464 0.93216 0.92861 0.88877 0.84130 0.83934 0.91142 0.81413 0.81508 0.81087 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.52 9.41 71.98 0.68 -3.85 16 2 C 0.10 3.67 3.07 44.17 0.14 3.80 16 3 H 0.10 4.06 6.90 -2.39 -0.02 4.04 16 4 N -0.81 -24.88 8.99 -171.82 -1.55 -26.42 16 5 C 0.46 20.41 6.81 87.65 0.60 21.01 16 6 O -0.58 -25.53 12.72 -2.99 -0.04 -25.57 16 7 N -0.40 -19.94 2.15 -464.39 -1.00 -20.94 16 8 C -0.38 -20.20 7.64 84.01 0.64 -19.56 16 9 H 0.09 4.77 7.29 -2.91 -0.02 4.74 16 10 C 0.10 5.29 4.72 84.91 0.40 5.69 16 11 N -0.88 -49.87 13.96 21.65 0.30 -49.56 16 12 Si 0.93 46.26 25.33 68.60 1.74 47.99 16 13 H -0.25 -12.16 5.63 99.48 0.56 -11.60 16 14 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 15 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 16 C 0.31 14.82 6.13 132.90 0.81 15.64 16 17 C -0.23 -9.53 8.96 22.50 0.20 -9.33 16 18 C -0.06 -1.95 10.17 22.45 0.23 -1.73 16 19 C -0.20 -5.97 10.11 22.39 0.23 -5.75 16 20 C 0.10 3.62 10.56 84.66 0.89 4.51 16 21 N -0.52 -24.85 5.30 -192.96 -1.02 -25.87 16 22 H 0.05 1.71 8.14 -2.38 -0.02 1.70 16 23 H 0.05 2.17 7.30 -2.39 -0.02 2.16 16 24 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 25 H 0.35 9.89 9.07 -89.70 -0.81 9.07 16 26 H 0.35 10.37 8.54 -89.69 -0.77 9.60 16 27 H 0.28 14.83 8.31 -92.71 -0.77 14.06 16 28 H 0.17 7.15 4.87 -35.04 -0.17 6.98 16 29 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.17 3.43 8.06 -2.91 -0.02 3.41 16 31 H 0.17 5.27 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -64.15 258.62 2.54 -61.61 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: -0.71 Total: 28.32 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 4.82 Total: 10.44 kcal Atomic # 7 Polarization: -119.53 SS G_CDS: -3.27 Total: -122.80 kcal Atomic # 8 Polarization: -25.53 SS G_CDS: -0.04 Total: -25.57 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.74 Total: 47.99 kcal Total: -64.15 2.54 -61.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573553502.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.707 kcal (2) G-P(sol) polarization free energy of solvation -64.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds