Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50695 * 109.47064 * 239.99970 * 2 1 3 5 5 H 1.08000 * 120.00015 * 274.99798 * 4 2 1 6 6 C 1.37875 * 120.00036 * 95.00424 * 4 2 1 7 7 N 1.31518 * 120.00141 * 184.91312 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 4.91611 * 6 4 2 9 9 H 1.48500 * 109.47351 * 84.83200 * 8 6 4 10 10 H 1.48500 * 109.47266 * 204.83502 * 8 6 4 11 11 H 1.48504 * 109.46780 * 324.83030 * 8 6 4 12 12 N 1.46501 * 109.46818 * 119.99811 * 2 1 3 13 13 C 1.34775 * 120.00197 * 274.99607 * 12 2 1 14 14 O 1.21511 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.48165 * 120.00030 * 179.97438 * 13 12 2 16 16 C 1.40013 * 120.88202 * 359.97438 * 15 13 12 17 17 C 1.37943 * 119.17549 * 180.02562 * 16 15 13 18 18 N 1.31916 * 121.00419 * 0.02562 * 17 16 15 19 19 C 1.32318 * 121.94534 * 359.65572 * 18 17 16 20 20 N 1.39021 * 119.64849 * 180.31768 * 19 18 17 21 21 C 1.39135 * 120.70670 * 0.63200 * 19 18 17 22 22 H 1.08994 * 109.47447 * 175.03955 * 1 2 3 23 23 H 1.09001 * 109.47661 * 295.03770 * 1 2 3 24 24 H 1.09003 * 109.47128 * 55.03778 * 1 2 3 25 25 H 0.97001 * 120.00337 * 180.02562 * 7 6 4 26 26 H 0.97002 * 119.99932 * 95.00238 * 12 2 1 27 27 H 1.07999 * 120.41012 * 359.97438 * 16 15 13 28 28 H 1.08001 * 119.49926 * 180.02562 * 17 16 15 29 29 H 0.97006 * 119.99832 * 180.31417 * 20 19 18 30 30 H 0.96999 * 120.00325 * 0.31293 * 20 19 18 31 31 H 1.08001 * 120.53503 * 179.67875 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4450 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8577 1.1607 2.4118 15 6 2.6403 -0.7168 3.5671 16 6 2.9774 -2.0751 3.5254 17 6 3.4326 -2.6905 4.6730 18 7 3.5528 -2.0191 5.8021 19 6 3.2522 -0.7334 5.8875 20 7 3.4032 -0.0709 7.1004 21 6 2.7805 -0.0388 4.7781 22 1 -0.3634 -1.0237 -0.0889 23 1 -0.3634 0.4349 0.9311 24 1 -0.3633 0.5889 -0.8422 25 1 2.9371 -0.1049 -4.2553 26 1 2.2489 -1.6318 1.1527 27 1 2.8815 -2.6342 2.6064 28 1 3.6945 -3.7380 4.6466 29 1 3.1800 0.8705 7.1699 30 1 3.7317 -0.5501 7.8772 31 1 2.5310 1.0094 4.8523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575916207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = -4.060792 kcal Electronic energy + Delta-G solvation = -15937.573602 eV Core-core repulsion = 13218.684780 eV Total energy + Delta-G solvation = -2718.888823 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.34983 -38.66129 -34.99565 -34.77851 -32.65284 -32.14544 -29.83590 -29.02654 -25.37699 -24.47751 -23.03363 -21.07891 -19.71898 -18.33661 -17.36037 -16.72945 -16.10307 -15.55401 -15.25758 -14.61565 -14.53165 -14.13880 -13.80992 -13.79577 -13.16429 -12.55890 -12.41032 -11.82082 -11.53639 -11.14069 -10.89750 -10.84575 -10.62546 -9.92633 -9.78650 -9.68425 -9.24918 -9.23120 -8.73464 -8.17257 -7.93062 -6.26429 -4.30686 0.97578 1.34142 3.24060 3.32425 3.36842 3.38304 3.39377 3.82736 4.11631 4.30054 4.67758 4.96137 5.09456 5.17420 5.23747 5.37114 5.73856 5.92468 6.27134 6.30684 6.48815 6.50423 6.63829 6.88720 7.14310 7.14823 7.31948 7.33532 7.48020 8.07577 8.15886 8.49194 8.72766 8.85085 9.35066 10.85132 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041200 B = 0.005941 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.452416 B = 4712.182438 C = 4988.295014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.229 3.771 3 H 0.052 0.948 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.082 3.918 7 N -0.887 5.887 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.260 1.260 12 N -0.691 5.691 13 C 0.540 3.460 14 O -0.550 6.550 15 C -0.035 4.035 16 C -0.203 4.203 17 C 0.142 3.858 18 N -0.539 5.539 19 C 0.395 3.605 20 N -0.854 5.854 21 C -0.184 4.184 22 H 0.048 0.952 23 H 0.029 0.971 24 H 0.054 0.946 25 H 0.268 0.732 26 H 0.395 0.605 27 H 0.139 0.861 28 H 0.160 0.840 29 H 0.408 0.592 30 H 0.402 0.598 31 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.672 -1.606 16.210 16.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.127 3.873 3 H 0.069 0.931 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.122 4.122 7 N -0.523 5.523 8 Si 0.700 3.300 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.184 1.184 12 N -0.339 5.339 13 C 0.325 3.675 14 O -0.430 6.430 15 C -0.047 4.047 16 C -0.226 4.226 17 C -0.014 4.014 18 N -0.258 5.258 19 C 0.158 3.842 20 N -0.398 5.398 21 C -0.210 4.210 22 H 0.067 0.933 23 H 0.048 0.952 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.230 0.770 27 H 0.157 0.843 28 H 0.177 0.823 29 H 0.238 0.762 30 H 0.231 0.769 31 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.793 -1.179 16.666 16.726 hybrid contribution -0.079 1.063 -0.590 1.218 sum 0.714 -0.115 16.075 16.092 Atomic orbital electron populations 1.22219 0.98339 1.00740 0.99363 1.19203 0.91102 0.94410 0.82542 0.93055 1.20987 1.45444 0.95676 0.94847 0.90204 1.24931 0.93518 0.98653 0.95130 1.69877 1.44505 1.36244 1.01698 0.86902 0.79842 0.85816 0.77426 1.19812 1.21103 1.18448 1.46631 1.63714 1.14020 1.09518 1.18299 0.79028 0.86770 0.83401 1.90708 1.51516 1.15613 1.85140 1.20397 0.96150 0.93905 0.94211 1.22094 1.05005 0.94692 1.00811 1.22315 0.93150 0.99332 0.86602 1.67002 1.22274 1.07187 1.29354 1.18231 0.90847 0.88542 0.86569 1.42145 1.75216 1.13286 1.09167 1.21450 1.06118 1.01839 0.91630 0.93271 0.95171 0.92742 0.92170 0.77035 0.84277 0.82259 0.76202 0.76854 0.84108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.47 37.15 0.35 -2.87 16 2 C 0.23 5.44 2.22 -69.09 -0.15 5.29 16 3 H 0.05 1.33 4.73 -51.93 -0.25 1.08 16 4 C -0.53 -14.11 9.05 -34.44 -0.31 -14.42 16 5 H 0.08 2.22 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 7 N -0.89 -25.84 13.96 55.43 0.77 -25.07 16 8 Si 0.87 21.40 26.99 -169.99 -4.59 16.81 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.26 -6.27 6.82 56.52 0.39 -5.88 16 12 N -0.69 -14.00 5.03 -55.78 -0.28 -14.28 16 13 C 0.54 10.77 7.76 -12.18 -0.09 10.68 16 14 O -0.55 -12.71 16.10 5.36 0.09 -12.63 16 15 C -0.04 -0.57 5.90 -104.69 -0.62 -1.19 16 16 C -0.20 -2.73 9.61 -39.02 -0.37 -3.10 16 17 C 0.14 1.73 11.16 -17.62 -0.20 1.54 16 18 N -0.54 -7.21 10.37 -12.48 -0.13 -7.34 16 19 C 0.40 5.14 7.74 -155.07 -1.20 3.94 16 20 N -0.85 -7.77 9.07 31.12 0.28 -7.49 16 21 C -0.18 -2.72 9.51 -38.78 -0.37 -3.08 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 24 H 0.05 1.19 8.14 -51.93 -0.42 0.76 16 25 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.39 6.98 6.73 -40.82 -0.27 6.71 16 27 H 0.14 1.63 6.53 -52.49 -0.34 1.29 16 28 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 29 H 0.41 2.82 8.82 -40.82 -0.36 2.46 16 30 H 0.40 3.04 8.95 -40.82 -0.37 2.68 16 31 H 0.14 2.02 7.74 -52.49 -0.41 1.61 16 LS Contribution 272.79 15.07 4.11 4.11 Total: -1.00 -32.32 272.79 -6.07 -38.39 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -3.26 Total: 8.54 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.06 Total: -1.04 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.65 Total: -54.18 kcal Atomic # 8 Polarization: -12.71 SS G_CDS: 0.09 Total: -12.63 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.59 Total: 16.81 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.32 -6.07 -38.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575916207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.326 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds