Wall clock time and date at job start Sun Mar 29 2020 22:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.47343 * 2 1 4 4 C 1.50695 * 109.47064 * 239.99970 * 2 1 3 5 5 H 1.08000 * 120.00015 * 274.99798 * 4 2 1 6 6 C 1.37875 * 120.00036 * 95.00424 * 4 2 1 7 7 N 1.31518 * 120.00141 * 184.91312 * 6 4 2 8 8 Si 1.86798 * 120.00132 * 4.91611 * 6 4 2 9 9 H 1.48500 * 109.47351 * 84.83200 * 8 6 4 10 10 H 1.48500 * 109.47266 * 204.83502 * 8 6 4 11 11 H 1.48504 * 109.46780 * 324.83030 * 8 6 4 12 12 N 1.46501 * 109.46818 * 119.99811 * 2 1 3 13 13 C 1.34775 * 120.00197 * 274.99607 * 12 2 1 14 14 O 1.21511 * 119.99865 * 0.02562 * 13 12 2 15 15 C 1.48165 * 120.00030 * 179.97438 * 13 12 2 16 16 C 1.40013 * 120.88202 * 359.97438 * 15 13 12 17 17 C 1.37943 * 119.17549 * 180.02562 * 16 15 13 18 18 N 1.31916 * 121.00419 * 0.02562 * 17 16 15 19 19 C 1.32318 * 121.94534 * 359.65572 * 18 17 16 20 20 N 1.39021 * 119.64849 * 180.31768 * 19 18 17 21 21 C 1.39135 * 120.70670 * 0.63200 * 19 18 17 22 22 H 1.08994 * 109.47447 * 175.03955 * 1 2 3 23 23 H 1.09001 * 109.47661 * 295.03770 * 1 2 3 24 24 H 1.09003 * 109.47128 * 55.03778 * 1 2 3 25 25 H 0.97001 * 120.00337 * 180.02562 * 7 6 4 26 26 H 0.97002 * 119.99932 * 95.00238 * 12 2 1 27 27 H 1.07999 * 120.41012 * 359.97438 * 16 15 13 28 28 H 1.08001 * 119.49926 * 180.02562 * 17 16 15 29 29 H 0.97006 * 119.99832 * 180.31417 * 20 19 18 30 30 H 0.96999 * 120.00325 * 0.31293 * 20 19 18 31 31 H 1.08001 * 120.53503 * 179.67875 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.1354 -1.7855 -1.2290 6 6 2.3602 0.0121 -2.3580 7 7 2.7060 -0.6132 -3.4622 8 14 2.3137 1.8790 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1059 2.3991 -3.6927 11 1 1.1987 2.3275 -1.4450 12 7 2.0182 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8577 1.1607 2.4118 15 6 2.6403 -0.7168 3.5671 16 6 2.9774 -2.0751 3.5254 17 6 3.4326 -2.6905 4.6730 18 7 3.5528 -2.0191 5.8021 19 6 3.2522 -0.7334 5.8875 20 7 3.4032 -0.0709 7.1004 21 6 2.7805 -0.0388 4.7781 22 1 -0.3634 -1.0237 -0.0889 23 1 -0.3634 0.4349 0.9311 24 1 -0.3633 0.5889 -0.8422 25 1 2.9371 -0.1049 -4.2553 26 1 2.2489 -1.6318 1.1527 27 1 2.8815 -2.6342 2.6064 28 1 3.6945 -3.7380 4.6466 29 1 3.1800 0.8705 7.1699 30 1 3.7317 -0.5501 7.8772 31 1 2.5310 1.0094 4.8523 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001575916207.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:10:02 Heat of formation + Delta-G solvation = -28.513332 kcal Electronic energy + Delta-G solvation = -15938.633944 eV Core-core repulsion = 13218.684780 eV Total energy + Delta-G solvation = -2719.949164 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.53424 -40.12654 -36.80671 -35.72831 -34.43707 -33.55642 -31.47852 -30.08041 -27.35374 -25.81027 -24.05892 -22.69572 -21.38035 -19.83208 -18.49608 -18.34494 -17.24982 -17.10756 -16.64603 -16.04217 -15.84190 -15.53428 -15.09198 -14.92887 -14.75199 -14.53887 -14.25567 -13.33961 -13.05267 -12.87116 -12.80500 -12.47680 -11.88597 -11.82067 -11.26268 -11.21955 -10.85197 -10.84897 -10.49382 -9.89740 -8.84263 -8.39583 -6.46176 -0.21280 0.33774 1.29203 1.34115 1.44133 1.96187 2.22390 2.26933 2.61708 2.97123 3.02110 3.67789 3.76519 4.05777 4.14927 4.33453 4.46960 4.69640 4.75250 4.79205 4.85408 5.06868 5.20428 5.33931 5.43416 5.54944 5.66012 6.10098 6.30792 6.54716 6.58311 6.78718 7.17679 7.26645 7.31343 8.75135 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.041200 B = 0.005941 C = 0.005612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.452416 B = 4712.182438 C = 4988.295014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.232 3.768 3 H 0.032 0.968 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.036 3.964 7 N -0.927 5.927 8 Si 0.924 3.076 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.256 1.256 12 N -0.689 5.689 13 C 0.541 3.459 14 O -0.587 6.587 15 C -0.055 4.055 16 C -0.205 4.205 17 C 0.152 3.848 18 N -0.547 5.547 19 C 0.396 3.604 20 N -0.836 5.836 21 C -0.197 4.197 22 H 0.060 0.940 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.271 0.729 26 H 0.407 0.593 27 H 0.154 0.846 28 H 0.198 0.802 29 H 0.419 0.581 30 H 0.413 0.587 31 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 -2.038 18.033 18.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.128 3.872 3 H 0.050 0.950 4 C -0.565 4.565 5 H 0.079 0.921 6 C -0.165 4.165 7 N -0.565 5.565 8 Si 0.749 3.251 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.180 1.180 12 N -0.338 5.338 13 C 0.328 3.672 14 O -0.469 6.469 15 C -0.066 4.066 16 C -0.228 4.228 17 C -0.005 4.005 18 N -0.266 5.266 19 C 0.157 3.843 20 N -0.382 5.382 21 C -0.223 4.223 22 H 0.079 0.921 23 H 0.056 0.944 24 H 0.070 0.930 25 H 0.081 0.919 26 H 0.244 0.756 27 H 0.171 0.829 28 H 0.214 0.786 29 H 0.251 0.749 30 H 0.244 0.756 31 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.942 -1.612 18.538 18.632 hybrid contribution -0.096 1.117 -1.029 1.522 sum 0.846 -0.494 17.510 17.537 Atomic orbital electron populations 1.22116 0.96768 1.01545 0.99606 1.18987 0.92252 0.93208 0.82735 0.95030 1.21151 1.44529 0.94960 0.95867 0.92115 1.25567 0.93666 1.02263 0.94977 1.69967 1.46379 1.37741 1.02448 0.86100 0.79682 0.81575 0.77782 1.20102 1.20113 1.17976 1.46341 1.63986 1.14583 1.08931 1.18790 0.77944 0.86358 0.84086 1.90676 1.53086 1.17321 1.85839 1.20137 0.98353 0.95140 0.92947 1.22257 1.04904 0.93551 1.02110 1.22911 0.91298 1.00748 0.85547 1.67154 1.22453 1.07176 1.29842 1.18343 0.90168 0.88580 0.87169 1.42139 1.73930 1.13862 1.08248 1.21471 1.07022 1.01887 0.91930 0.92091 0.94449 0.93049 0.91943 0.75569 0.82884 0.78557 0.74927 0.75628 0.84475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.04 9.47 71.98 0.68 -5.36 16 2 C 0.23 10.91 2.22 44.24 0.10 11.01 16 3 H 0.03 1.63 4.73 -2.39 -0.01 1.62 16 4 C -0.53 -28.06 9.05 25.60 0.23 -27.83 16 5 H 0.06 3.41 8.06 -2.91 -0.02 3.38 16 6 C 0.04 2.01 5.47 84.65 0.46 2.47 16 7 N -0.93 -54.51 13.96 21.45 0.30 -54.21 16 8 Si 0.92 44.15 26.99 68.60 1.85 46.00 16 9 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.26 -11.93 6.82 99.48 0.68 -11.25 16 12 N -0.69 -27.58 5.03 -448.69 -2.26 -29.84 16 13 C 0.54 21.38 7.76 86.88 0.67 22.06 16 14 O -0.59 -27.23 16.10 -3.75 -0.06 -27.29 16 15 C -0.05 -1.72 5.90 -19.91 -0.12 -1.84 16 16 C -0.21 -5.08 9.61 22.63 0.22 -4.86 16 17 C 0.15 3.21 11.16 84.61 0.94 4.15 16 18 N -0.55 -13.03 10.37 -193.40 -2.00 -15.04 16 19 C 0.40 9.43 7.74 133.08 1.03 10.46 16 20 N -0.84 -13.17 9.07 -55.47 -0.50 -13.68 16 21 C -0.20 -5.57 9.51 22.79 0.22 -5.36 16 22 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 25 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 26 H 0.41 14.07 6.73 -92.71 -0.62 13.45 16 27 H 0.15 3.25 6.53 -2.91 -0.02 3.23 16 28 H 0.20 2.60 8.06 -2.91 -0.02 2.57 16 29 H 0.42 4.87 8.82 -92.70 -0.82 4.05 16 30 H 0.41 5.08 8.95 -92.71 -0.83 4.25 16 31 H 0.14 3.88 7.74 -2.91 -0.02 3.86 16 Total: -1.00 -68.79 272.79 0.66 -68.13 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -1.11 Total: 21.02 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 4.44 Total: 4.91 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -4.46 Total: -112.77 kcal Atomic # 8 Polarization: -27.23 SS G_CDS: -0.06 Total: -27.29 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 1.85 Total: 46.00 kcal Total: -68.79 0.66 -68.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575916207.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.613 kcal (2) G-P(sol) polarization free energy of solvation -68.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds