Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40514 * 126.06380 * 2 1 4 4 N 1.39676 * 125.98279 * 359.97151 * 3 2 1 5 5 C 1.34786 * 119.99711 * 179.72179 * 4 3 2 6 6 O 1.21763 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.46113 * 119.99989 * 179.72304 * 5 4 3 8 8 H 1.08002 * 119.99659 * 0.27818 * 7 5 4 9 9 C 1.40119 * 120.00058 * 180.27085 * 7 5 4 10 10 N 1.30634 * 120.00367 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00146 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46986 * 90.00092 * 11 9 7 13 13 H 1.48499 * 109.47352 * 210.00245 * 11 9 7 14 14 H 1.48505 * 109.47119 * 330.00249 * 11 9 7 15 15 N 1.31414 * 108.02807 * 179.71213 * 3 2 1 16 16 N 1.40079 * 108.13152 * 0.25873 * 15 3 2 17 17 H 0.97001 * 125.96728 * 180.02562 * 16 15 3 18 18 C 1.35070 * 108.06446 * 0.02562 * 16 15 3 19 19 C 1.50699 * 126.04828 * 180.02562 * 18 16 15 20 20 C 1.52995 * 117.50108 * 8.72274 * 19 18 16 21 21 C 1.52999 * 117.50001 * 300.06208 * 19 18 16 22 22 H 1.09003 * 109.46475 * 90.03047 * 1 2 3 23 23 H 1.08997 * 109.47101 * 210.02928 * 1 2 3 24 24 H 1.08997 * 109.47044 * 330.03257 * 1 2 3 25 25 H 0.96990 * 120.00596 * 359.71704 * 4 3 2 26 26 H 0.96999 * 120.00324 * 179.97438 * 10 9 7 27 27 H 1.08998 * 115.54445 * 154.39172 * 19 18 16 28 28 H 1.09002 * 117.49866 * 359.97438 * 20 19 18 29 29 H 1.09000 * 117.49726 * 145.01977 * 20 19 18 30 30 H 1.09003 * 117.49744 * 214.98387 * 21 19 18 31 31 H 1.09004 * 117.49723 * 359.97236 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3342 1.1359 0.0000 4 7 1.9036 2.4646 -0.0006 5 6 2.8064 3.4655 0.0052 6 8 3.9972 3.2113 0.0113 7 6 2.3561 4.8555 -0.0015 8 1 1.2999 5.0809 -0.0065 9 6 3.2946 5.8960 -0.0013 10 7 4.5722 5.6233 0.0044 11 14 2.7189 7.6731 -0.0091 12 1 2.5611 8.1484 1.3888 13 1 3.7225 8.5154 -0.7081 14 1 1.4155 7.7681 -0.7144 15 7 3.5837 0.7290 0.0063 16 7 3.5861 -0.6718 0.0044 17 1 4.3721 -1.2402 0.0083 18 6 2.3027 -1.0928 -0.0037 19 6 1.8398 -2.5269 -0.0078 20 6 2.8981 -3.6114 0.2034 21 6 2.2769 -3.4070 -1.1806 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5143 24 1 -0.3633 0.8903 0.5133 25 1 0.9551 2.6671 -0.0052 26 1 5.2218 6.3436 0.0042 27 1 0.8490 -2.7022 0.4111 28 1 3.9293 -3.2877 0.3449 29 1 2.6033 -4.5005 0.7609 30 1 1.5737 -4.1616 -1.5330 31 1 2.8989 -2.9485 -1.9494 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001626883856.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = 59.036761 kcal Electronic energy + Delta-G solvation = -16006.713806 eV Core-core repulsion = 13290.561098 eV Total energy + Delta-G solvation = -2716.152708 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.78997 -37.56162 -36.63660 -33.42754 -32.41541 -31.53602 -29.36728 -26.37162 -26.09914 -23.16544 -22.57522 -21.41059 -19.18425 -18.63791 -17.39887 -16.77506 -15.65994 -15.27330 -14.81987 -14.48974 -14.09620 -13.54187 -12.91963 -12.61998 -12.44577 -12.31530 -12.16268 -11.76652 -11.48173 -11.17176 -11.10685 -10.85644 -10.59994 -10.53629 -10.25219 -9.66831 -9.61820 -8.82815 -7.84137 -7.60937 -7.16276 -6.23146 -4.70237 2.32887 3.13029 3.19803 3.23584 3.37811 3.50658 3.82402 4.06878 4.37145 4.63550 4.66495 4.75069 4.84475 5.21946 5.40155 5.44654 5.66218 5.77156 5.82091 5.83172 5.89389 6.04317 6.20094 6.22526 6.60932 6.93229 7.38806 7.64508 7.89849 8.10100 8.27763 8.53700 8.96108 9.43163 10.54557 10.71616 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.005415 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.745164 B = 5169.785478 C = 5547.964576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.265 4.265 3 C 0.327 3.673 4 N -0.661 5.661 5 C 0.537 3.463 6 O -0.531 6.531 7 C -0.539 4.539 8 H 0.072 0.928 9 C 0.086 3.914 10 N -0.762 5.762 11 Si 0.913 3.087 12 H -0.271 1.271 13 H -0.279 1.279 14 H -0.264 1.264 15 N -0.274 5.274 16 N -0.490 5.490 17 H 0.429 0.571 18 C 0.115 3.885 19 C -0.087 4.087 20 C -0.180 4.180 21 C -0.168 4.168 22 H 0.055 0.945 23 H 0.055 0.945 24 H 0.058 0.942 25 H 0.399 0.601 26 H 0.271 0.729 27 H 0.126 0.874 28 H 0.091 0.909 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.815 -14.086 -0.397 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.279 4.279 3 C 0.068 3.932 4 N -0.312 5.312 5 C 0.341 3.659 6 O -0.408 6.408 7 C -0.576 4.576 8 H 0.090 0.910 9 C -0.134 4.134 10 N -0.391 5.391 11 Si 0.737 3.263 12 H -0.197 1.197 13 H -0.204 1.204 14 H -0.188 1.188 15 N -0.105 5.105 16 N -0.198 5.198 17 H 0.272 0.728 18 C -0.014 4.014 19 C -0.107 4.107 20 C -0.217 4.217 21 C -0.206 4.206 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.077 0.923 25 H 0.233 0.767 26 H 0.081 0.919 27 H 0.144 0.856 28 H 0.110 0.890 29 H 0.121 0.879 30 H 0.120 0.880 31 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.517 -13.682 -0.385 14.757 hybrid contribution -1.137 0.422 0.015 1.213 sum -6.654 -13.259 -0.370 14.840 Atomic orbital electron populations 1.19940 0.89819 1.01464 1.00949 1.19380 0.96327 0.90234 1.21986 1.19505 0.90555 0.86835 0.96256 1.43859 1.10642 1.00401 1.76299 1.18528 0.85132 0.84574 0.77644 1.90730 1.15523 1.82871 1.51673 1.20769 0.94037 0.88487 1.54325 0.91008 1.25724 0.94346 1.00720 0.92627 1.70002 1.01317 1.33417 1.34324 0.86291 0.79275 0.81847 0.78889 1.19653 1.20400 1.18776 1.78412 1.16760 0.85104 1.30208 1.46250 1.05377 1.06330 1.61844 0.72840 1.19599 0.85727 0.93365 1.02691 1.20562 0.99794 0.86077 1.04229 1.23004 0.98173 1.00377 1.00133 1.23057 1.03757 1.02101 0.91642 0.92619 0.92604 0.92298 0.76713 0.91860 0.85600 0.89009 0.87941 0.88023 0.88556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.87 9.99 36.01 0.36 -0.51 16 2 C -0.26 -4.79 6.12 -104.85 -0.64 -5.43 16 3 C 0.33 7.60 7.77 -154.67 -1.20 6.40 16 4 N -0.66 -16.02 5.43 -12.52 -0.07 -16.09 16 5 C 0.54 15.89 7.70 -13.10 -0.10 15.78 16 6 O -0.53 -17.91 13.73 5.13 0.07 -17.84 16 7 C -0.54 -15.30 9.53 -35.72 -0.34 -15.64 16 8 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 9 C 0.09 2.42 5.50 -17.36 -0.10 2.32 16 10 N -0.76 -23.11 11.82 55.55 0.66 -22.45 16 11 Si 0.91 20.08 29.56 -169.99 -5.02 15.05 16 12 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 13 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 14 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 15 N -0.27 -6.76 10.92 31.39 0.34 -6.41 16 16 N -0.49 -8.93 7.23 33.47 0.24 -8.69 16 17 H 0.43 6.37 7.95 -182.61 -1.45 4.92 16 18 C 0.11 1.85 6.71 -82.26 -0.55 1.29 16 19 C -0.09 -0.97 5.94 -91.78 -0.55 -1.51 16 20 C -0.18 -1.61 10.14 -26.70 -0.27 -1.88 16 21 C -0.17 -1.56 10.24 -26.70 -0.27 -1.83 16 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 23 H 0.06 0.62 7.32 -51.93 -0.38 0.24 16 24 H 0.06 0.78 7.70 -51.93 -0.40 0.38 16 25 H 0.40 8.10 8.19 -40.82 -0.33 7.76 16 26 H 0.27 7.41 8.29 -40.82 -0.34 7.07 16 27 H 0.13 1.20 7.40 -51.93 -0.38 0.82 16 28 H 0.09 0.83 7.15 -51.93 -0.37 0.46 16 29 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 274.07 15.07 4.13 4.13 Total: -1.00 -37.09 274.07 -7.87 -44.96 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.56 Total: 8.34 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -3.66 Total: -1.01 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 1.17 Total: -53.64 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: 0.07 Total: -17.84 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -37.09 -7.87 -44.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626883856.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.997 kcal (2) G-P(sol) polarization free energy of solvation -37.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds