Wall clock time and date at job start Sun Mar 29 2020 21:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40514 * 126.06380 * 2 1 4 4 N 1.39676 * 125.98279 * 359.97151 * 3 2 1 5 5 C 1.34786 * 119.99711 * 179.72179 * 4 3 2 6 6 O 1.21763 * 119.99948 * 359.97438 * 5 4 3 7 7 C 1.46113 * 119.99989 * 179.72304 * 5 4 3 8 8 H 1.08002 * 119.99659 * 0.27818 * 7 5 4 9 9 C 1.40119 * 120.00058 * 180.27085 * 7 5 4 10 10 N 1.30634 * 120.00367 * 0.02562 * 9 7 5 11 11 Si 1.86803 * 120.00146 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.46986 * 90.00092 * 11 9 7 13 13 H 1.48499 * 109.47352 * 210.00245 * 11 9 7 14 14 H 1.48505 * 109.47119 * 330.00249 * 11 9 7 15 15 N 1.31414 * 108.02807 * 179.71213 * 3 2 1 16 16 N 1.40079 * 108.13152 * 0.25873 * 15 3 2 17 17 H 0.97001 * 125.96728 * 180.02562 * 16 15 3 18 18 C 1.35070 * 108.06446 * 0.02562 * 16 15 3 19 19 C 1.50699 * 126.04828 * 180.02562 * 18 16 15 20 20 C 1.52995 * 117.50108 * 8.72274 * 19 18 16 21 21 C 1.52999 * 117.50001 * 300.06208 * 19 18 16 22 22 H 1.09003 * 109.46475 * 90.03047 * 1 2 3 23 23 H 1.08997 * 109.47101 * 210.02928 * 1 2 3 24 24 H 1.08997 * 109.47044 * 330.03257 * 1 2 3 25 25 H 0.96990 * 120.00596 * 359.71704 * 4 3 2 26 26 H 0.96999 * 120.00324 * 179.97438 * 10 9 7 27 27 H 1.08998 * 115.54445 * 154.39172 * 19 18 16 28 28 H 1.09002 * 117.49866 * 359.97438 * 20 19 18 29 29 H 1.09000 * 117.49726 * 145.01977 * 20 19 18 30 30 H 1.09003 * 117.49744 * 214.98387 * 21 19 18 31 31 H 1.09004 * 117.49723 * 359.97236 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3342 1.1359 0.0000 4 7 1.9036 2.4646 -0.0006 5 6 2.8064 3.4655 0.0052 6 8 3.9972 3.2113 0.0113 7 6 2.3561 4.8555 -0.0015 8 1 1.2999 5.0809 -0.0065 9 6 3.2946 5.8960 -0.0013 10 7 4.5722 5.6233 0.0044 11 14 2.7189 7.6731 -0.0091 12 1 2.5611 8.1484 1.3888 13 1 3.7225 8.5154 -0.7081 14 1 1.4155 7.7681 -0.7144 15 7 3.5837 0.7290 0.0063 16 7 3.5861 -0.6718 0.0044 17 1 4.3721 -1.2402 0.0083 18 6 2.3027 -1.0928 -0.0037 19 6 1.8398 -2.5269 -0.0078 20 6 2.8981 -3.6114 0.2034 21 6 2.2769 -3.4070 -1.1806 22 1 -0.3632 -0.0005 -1.0277 23 1 -0.3633 -0.8897 0.5143 24 1 -0.3633 0.8903 0.5133 25 1 0.9551 2.6671 -0.0052 26 1 5.2218 6.3436 0.0042 27 1 0.8490 -2.7022 0.4111 28 1 3.9293 -3.2877 0.3449 29 1 2.6033 -4.5005 0.7609 30 1 1.5737 -4.1616 -1.5330 31 1 2.8989 -2.9485 -1.9494 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001626883856.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:28 Heat of formation + Delta-G solvation = 31.687109 kcal Electronic energy + Delta-G solvation = -16007.899775 eV Core-core repulsion = 13290.561098 eV Total energy + Delta-G solvation = -2717.338677 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.27398 -39.41970 -37.80052 -35.33977 -34.52307 -32.98870 -31.03808 -28.44601 -27.36908 -24.53939 -23.31170 -23.04492 -20.81735 -20.30105 -19.21387 -18.11719 -17.42726 -16.76927 -16.43043 -16.04416 -15.74288 -14.77634 -14.54089 -14.51495 -14.01457 -13.50030 -13.31173 -13.20891 -12.82067 -12.69710 -12.45778 -12.42385 -12.03197 -12.00130 -11.40025 -11.31877 -11.18514 -10.91302 -9.86500 -9.34013 -8.88948 -8.34401 -6.93121 0.99608 1.40527 1.41540 1.58845 1.82622 1.92872 2.25435 2.56115 2.92732 2.99431 3.61000 3.64232 3.84488 4.05986 4.10727 4.29542 4.47863 4.75604 4.78947 4.98193 5.01087 5.05298 5.15555 5.21703 5.27121 5.34985 5.53239 5.73527 6.09055 6.34192 6.57536 6.77738 6.83585 7.50934 8.41667 8.60904 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.060104 B = 0.005415 C = 0.005046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.745164 B = 5169.785478 C = 5547.964576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C -0.279 4.279 3 C 0.295 3.705 4 N -0.655 5.655 5 C 0.520 3.480 6 O -0.587 6.587 7 C -0.564 4.564 8 H 0.098 0.902 9 C 0.026 3.974 10 N -0.820 5.820 11 Si 1.007 2.993 12 H -0.260 1.260 13 H -0.274 1.274 14 H -0.244 1.244 15 N -0.347 5.347 16 N -0.483 5.483 17 H 0.440 0.560 18 C 0.135 3.865 19 C -0.104 4.104 20 C -0.168 4.168 21 C -0.156 4.156 22 H 0.066 0.934 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.415 0.585 26 H 0.277 0.723 27 H 0.152 0.848 28 H 0.086 0.914 29 H 0.130 0.870 30 H 0.130 0.870 31 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 -15.262 -0.378 18.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.293 4.293 3 C 0.038 3.962 4 N -0.307 5.307 5 C 0.325 3.675 6 O -0.469 6.469 7 C -0.600 4.600 8 H 0.116 0.884 9 C -0.189 4.189 10 N -0.449 5.449 11 Si 0.825 3.175 12 H -0.185 1.185 13 H -0.199 1.199 14 H -0.167 1.167 15 N -0.178 5.178 16 N -0.193 5.193 17 H 0.285 0.715 18 C 0.006 3.994 19 C -0.124 4.124 20 C -0.205 4.205 21 C -0.194 4.194 22 H 0.085 0.915 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.252 0.748 26 H 0.087 0.913 27 H 0.170 0.830 28 H 0.104 0.896 29 H 0.148 0.852 30 H 0.148 0.852 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.085 -14.909 -0.367 16.965 hybrid contribution -0.322 0.585 0.001 0.668 sum -8.408 -14.325 -0.366 16.614 Atomic orbital electron populations 1.20037 0.86605 1.03007 1.02149 1.19855 0.98539 0.88595 1.22262 1.19889 0.91597 0.87235 0.97517 1.43320 1.10719 1.00662 1.75964 1.19008 0.85084 0.86215 0.77238 1.90676 1.17864 1.84136 1.54186 1.21361 0.95635 0.88596 1.54438 0.88433 1.27100 0.94025 1.06762 0.91023 1.70191 1.03398 1.35739 1.35573 0.84887 0.79328 0.73709 0.79539 1.18455 1.19866 1.16684 1.78214 1.18777 0.88612 1.32244 1.46127 1.07118 1.04553 1.61540 0.71501 1.20379 0.84129 0.95743 0.99133 1.20766 1.01620 0.83149 1.06867 1.23160 0.97286 1.00003 1.00083 1.23144 1.03694 1.01449 0.91112 0.91501 0.89435 0.92385 0.74795 0.91349 0.83028 0.89580 0.85198 0.85169 0.90056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.51 9.99 71.24 0.71 -0.80 16 2 C -0.28 -9.92 6.12 -20.01 -0.12 -10.04 16 3 C 0.30 14.18 7.77 133.46 1.04 15.21 16 4 N -0.65 -32.95 5.43 -311.69 -1.69 -34.64 16 5 C 0.52 32.16 7.70 86.28 0.66 32.82 16 6 O -0.59 -41.99 13.73 -4.55 -0.06 -42.05 16 7 C -0.56 -32.65 9.53 24.77 0.24 -32.41 16 8 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16 9 C 0.03 1.49 5.50 85.33 0.47 1.96 16 10 N -0.82 -51.61 11.82 21.85 0.26 -51.35 16 11 Si 1.01 41.16 29.56 68.60 2.03 43.19 16 12 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 13 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 14 H -0.24 -9.10 7.11 99.48 0.71 -8.40 16 15 N -0.35 -17.98 10.92 -54.59 -0.60 -18.58 16 16 N -0.48 -17.94 7.23 -48.01 -0.35 -18.29 16 17 H 0.44 13.34 7.95 -213.33 -1.70 11.64 16 18 C 0.14 4.19 6.71 41.36 0.28 4.47 16 19 C -0.10 -1.97 5.94 -11.54 -0.07 -2.04 16 20 C -0.17 -2.43 10.14 30.62 0.31 -2.12 16 21 C -0.16 -2.35 10.24 30.62 0.31 -2.04 16 22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.62 7.32 -2.39 -0.02 1.60 16 24 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16 25 H 0.42 17.23 8.19 -92.72 -0.76 16.47 16 26 H 0.28 15.71 8.29 -92.71 -0.77 14.94 16 27 H 0.15 2.15 7.40 -2.39 -0.02 2.14 16 28 H 0.09 1.36 7.15 -2.39 -0.02 1.34 16 29 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -86.87 274.07 2.14 -84.73 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -1.27 Total: 31.99 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 3.83 Total: 5.02 kcal Atomic # 7 Polarization: -120.49 SS G_CDS: -2.38 Total: -122.87 kcal Atomic # 8 Polarization: -41.99 SS G_CDS: -0.06 Total: -42.05 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -86.87 2.14 -84.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001626883856.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.414 kcal (2) G-P(sol) polarization free energy of solvation -86.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds