Wall clock time and date at job start Sun Mar 29 2020 21:38:28
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50699 * 1
3 3 C 1.40514 * 126.06380 * 2 1
4 4 N 1.39676 * 125.98279 * 359.97151 * 3 2 1
5 5 C 1.34786 * 119.99711 * 179.72179 * 4 3 2
6 6 O 1.21763 * 119.99948 * 359.97438 * 5 4 3
7 7 C 1.46113 * 119.99989 * 179.72304 * 5 4 3
8 8 H 1.08002 * 119.99659 * 0.27818 * 7 5 4
9 9 C 1.40119 * 120.00058 * 180.27085 * 7 5 4
10 10 N 1.30634 * 120.00367 * 0.02562 * 9 7 5
11 11 Si 1.86803 * 120.00146 * 180.02562 * 9 7 5
12 12 H 1.48500 * 109.46986 * 90.00092 * 11 9 7
13 13 H 1.48499 * 109.47352 * 210.00245 * 11 9 7
14 14 H 1.48505 * 109.47119 * 330.00249 * 11 9 7
15 15 N 1.31414 * 108.02807 * 179.71213 * 3 2 1
16 16 N 1.40079 * 108.13152 * 0.25873 * 15 3 2
17 17 H 0.97001 * 125.96728 * 180.02562 * 16 15 3
18 18 C 1.35070 * 108.06446 * 0.02562 * 16 15 3
19 19 C 1.50699 * 126.04828 * 180.02562 * 18 16 15
20 20 C 1.52995 * 117.50108 * 8.72274 * 19 18 16
21 21 C 1.52999 * 117.50001 * 300.06208 * 19 18 16
22 22 H 1.09003 * 109.46475 * 90.03047 * 1 2 3
23 23 H 1.08997 * 109.47101 * 210.02928 * 1 2 3
24 24 H 1.08997 * 109.47044 * 330.03257 * 1 2 3
25 25 H 0.96990 * 120.00596 * 359.71704 * 4 3 2
26 26 H 0.96999 * 120.00324 * 179.97438 * 10 9 7
27 27 H 1.08998 * 115.54445 * 154.39172 * 19 18 16
28 28 H 1.09002 * 117.49866 * 359.97438 * 20 19 18
29 29 H 1.09000 * 117.49726 * 145.01977 * 20 19 18
30 30 H 1.09003 * 117.49744 * 214.98387 * 21 19 18
31 31 H 1.09004 * 117.49723 * 359.97236 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3342 1.1359 0.0000
4 7 1.9036 2.4646 -0.0006
5 6 2.8064 3.4655 0.0052
6 8 3.9972 3.2113 0.0113
7 6 2.3561 4.8555 -0.0015
8 1 1.2999 5.0809 -0.0065
9 6 3.2946 5.8960 -0.0013
10 7 4.5722 5.6233 0.0044
11 14 2.7189 7.6731 -0.0091
12 1 2.5611 8.1484 1.3888
13 1 3.7225 8.5154 -0.7081
14 1 1.4155 7.7681 -0.7144
15 7 3.5837 0.7290 0.0063
16 7 3.5861 -0.6718 0.0044
17 1 4.3721 -1.2402 0.0083
18 6 2.3027 -1.0928 -0.0037
19 6 1.8398 -2.5269 -0.0078
20 6 2.8981 -3.6114 0.2034
21 6 2.2769 -3.4070 -1.1806
22 1 -0.3632 -0.0005 -1.0277
23 1 -0.3633 -0.8897 0.5143
24 1 -0.3633 0.8903 0.5133
25 1 0.9551 2.6671 -0.0052
26 1 5.2218 6.3436 0.0042
27 1 0.8490 -2.7022 0.4111
28 1 3.9293 -3.2877 0.3449
29 1 2.6033 -4.5005 0.7609
30 1 1.5737 -4.1616 -1.5330
31 1 2.8989 -2.9485 -1.9494
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001626883856.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:38:28
Heat of formation + Delta-G solvation = 31.687109 kcal
Electronic energy + Delta-G solvation = -16007.899775 eV
Core-core repulsion = 13290.561098 eV
Total energy + Delta-G solvation = -2717.338677 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-42.27398 -39.41970 -37.80052 -35.33977 -34.52307 -32.98870 -31.03808 -28.44601
-27.36908 -24.53939 -23.31170 -23.04492 -20.81735 -20.30105 -19.21387 -18.11719
-17.42726 -16.76927 -16.43043 -16.04416 -15.74288 -14.77634 -14.54089 -14.51495
-14.01457 -13.50030 -13.31173 -13.20891 -12.82067 -12.69710 -12.45778 -12.42385
-12.03197 -12.00130 -11.40025 -11.31877 -11.18514 -10.91302 -9.86500 -9.34013
-8.88948 -8.34401 -6.93121 0.99608 1.40527 1.41540 1.58845 1.82622
1.92872 2.25435 2.56115 2.92732 2.99431 3.61000 3.64232 3.84488
4.05986 4.10727 4.29542 4.47863 4.75604 4.78947 4.98193 5.01087
5.05298 5.15555 5.21703 5.27121 5.34985 5.53239 5.73527 6.09055
6.34192 6.57536 6.77738 6.83585 7.50934 8.41667 8.60904
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.060104 B = 0.005415 C = 0.005046
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 465.745164 B = 5169.785478 C = 5547.964576
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.060 4.060
2 C -0.279 4.279
3 C 0.295 3.705
4 N -0.655 5.655
5 C 0.520 3.480
6 O -0.587 6.587
7 C -0.564 4.564
8 H 0.098 0.902
9 C 0.026 3.974
10 N -0.820 5.820
11 Si 1.007 2.993
12 H -0.260 1.260
13 H -0.274 1.274
14 H -0.244 1.244
15 N -0.347 5.347
16 N -0.483 5.483
17 H 0.440 0.560
18 C 0.135 3.865
19 C -0.104 4.104
20 C -0.168 4.168
21 C -0.156 4.156
22 H 0.066 0.934
23 H 0.087 0.913
24 H 0.057 0.943
25 H 0.415 0.585
26 H 0.277 0.723
27 H 0.152 0.848
28 H 0.086 0.914
29 H 0.130 0.870
30 H 0.130 0.870
31 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.325 -15.262 -0.378 18.430
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.293 4.293
3 C 0.038 3.962
4 N -0.307 5.307
5 C 0.325 3.675
6 O -0.469 6.469
7 C -0.600 4.600
8 H 0.116 0.884
9 C -0.189 4.189
10 N -0.449 5.449
11 Si 0.825 3.175
12 H -0.185 1.185
13 H -0.199 1.199
14 H -0.167 1.167
15 N -0.178 5.178
16 N -0.193 5.193
17 H 0.285 0.715
18 C 0.006 3.994
19 C -0.124 4.124
20 C -0.205 4.205
21 C -0.194 4.194
22 H 0.085 0.915
23 H 0.106 0.894
24 H 0.076 0.924
25 H 0.252 0.748
26 H 0.087 0.913
27 H 0.170 0.830
28 H 0.104 0.896
29 H 0.148 0.852
30 H 0.148 0.852
31 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges -8.085 -14.909 -0.367 16.965
hybrid contribution -0.322 0.585 0.001 0.668
sum -8.408 -14.325 -0.366 16.614
Atomic orbital electron populations
1.20037 0.86605 1.03007 1.02149 1.19855 0.98539 0.88595 1.22262
1.19889 0.91597 0.87235 0.97517 1.43320 1.10719 1.00662 1.75964
1.19008 0.85084 0.86215 0.77238 1.90676 1.17864 1.84136 1.54186
1.21361 0.95635 0.88596 1.54438 0.88433 1.27100 0.94025 1.06762
0.91023 1.70191 1.03398 1.35739 1.35573 0.84887 0.79328 0.73709
0.79539 1.18455 1.19866 1.16684 1.78214 1.18777 0.88612 1.32244
1.46127 1.07118 1.04553 1.61540 0.71501 1.20379 0.84129 0.95743
0.99133 1.20766 1.01620 0.83149 1.06867 1.23160 0.97286 1.00003
1.00083 1.23144 1.03694 1.01449 0.91112 0.91501 0.89435 0.92385
0.74795 0.91349 0.83028 0.89580 0.85198 0.85169 0.90056
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -1.51 9.99 71.24 0.71 -0.80 16
2 C -0.28 -9.92 6.12 -20.01 -0.12 -10.04 16
3 C 0.30 14.18 7.77 133.46 1.04 15.21 16
4 N -0.65 -32.95 5.43 -311.69 -1.69 -34.64 16
5 C 0.52 32.16 7.70 86.28 0.66 32.82 16
6 O -0.59 -41.99 13.73 -4.55 -0.06 -42.05 16
7 C -0.56 -32.65 9.53 24.77 0.24 -32.41 16
8 H 0.10 4.92 7.85 -2.91 -0.02 4.90 16
9 C 0.03 1.49 5.50 85.33 0.47 1.96 16
10 N -0.82 -51.61 11.82 21.85 0.26 -51.35 16
11 Si 1.01 41.16 29.56 68.60 2.03 43.19 16
12 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16
13 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16
14 H -0.24 -9.10 7.11 99.48 0.71 -8.40 16
15 N -0.35 -17.98 10.92 -54.59 -0.60 -18.58 16
16 N -0.48 -17.94 7.23 -48.01 -0.35 -18.29 16
17 H 0.44 13.34 7.95 -213.33 -1.70 11.64 16
18 C 0.14 4.19 6.71 41.36 0.28 4.47 16
19 C -0.10 -1.97 5.94 -11.54 -0.07 -2.04 16
20 C -0.17 -2.43 10.14 30.62 0.31 -2.12 16
21 C -0.16 -2.35 10.24 30.62 0.31 -2.04 16
22 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
23 H 0.09 1.62 7.32 -2.39 -0.02 1.60 16
24 H 0.06 1.45 7.70 -2.39 -0.02 1.43 16
25 H 0.42 17.23 8.19 -92.72 -0.76 16.47 16
26 H 0.28 15.71 8.29 -92.71 -0.77 14.94 16
27 H 0.15 2.15 7.40 -2.39 -0.02 2.14 16
28 H 0.09 1.36 7.15 -2.39 -0.02 1.34 16
29 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16
30 H 0.13 1.28 8.14 -2.39 -0.02 1.26 16
31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16
Total: -1.00 -86.87 274.07 2.14 -84.73
By element:
Atomic # 1 Polarization: 33.26 SS G_CDS: -1.27 Total: 31.99 kcal
Atomic # 6 Polarization: 1.19 SS G_CDS: 3.83 Total: 5.02 kcal
Atomic # 7 Polarization: -120.49 SS G_CDS: -2.38 Total: -122.87 kcal
Atomic # 8 Polarization: -41.99 SS G_CDS: -0.06 Total: -42.05 kcal
Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal
Total: -86.87 2.14 -84.73 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001626883856.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 116.414 kcal
(2) G-P(sol) polarization free energy of solvation -86.871 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.543 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) 31.687 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds