Wall clock time and date at job start Sun Mar 29 2020 22:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.20556 * 2 1 4 4 C 1.54386 * 110.30796 * 238.04701 * 2 1 3 5 5 C 1.54533 * 101.77666 * 266.66571 * 4 2 1 6 6 H 1.08997 * 110.47728 * 93.52318 * 5 4 2 7 7 N 1.46498 * 110.48057 * 216.14836 * 5 4 2 8 8 C 1.34775 * 119.99696 * 201.27909 * 7 5 4 9 9 O 1.21695 * 120.00353 * 359.97438 * 8 7 5 10 10 C 1.46376 * 119.99873 * 179.97438 * 8 7 5 11 11 H 1.08000 * 120.00028 * 359.97438 * 10 8 7 12 12 C 1.40051 * 119.99828 * 179.97438 * 10 8 7 13 13 N 1.30669 * 120.00423 * 0.02562 * 12 10 8 14 14 Si 1.86810 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47081 * 90.00280 * 14 12 10 16 16 H 1.48497 * 109.47019 * 210.00349 * 14 12 10 17 17 H 1.48498 * 109.47129 * 329.99959 * 14 12 10 18 18 C 1.51567 * 104.24103 * 334.83799 * 5 4 2 19 19 N 1.30915 * 141.44389 * 196.67260 * 18 5 4 20 20 C 1.34009 * 109.29808 * 179.74235 * 19 18 5 21 21 C 1.34557 * 108.03498 * 0.05576 * 20 19 18 22 22 N 1.34818 * 109.94897 * 16.54372 * 18 5 4 23 23 H 1.08995 * 109.47119 * 300.70171 * 1 2 3 24 24 H 1.08995 * 109.47129 * 60.70663 * 1 2 3 25 25 H 1.09006 * 109.46751 * 180.69900 * 1 2 3 26 26 H 1.09005 * 110.96784 * 24.79093 * 4 2 1 27 27 H 1.09003 * 110.96824 * 148.54640 * 4 2 1 28 28 H 0.96999 * 119.99895 * 21.27342 * 7 5 4 29 29 H 0.97000 * 120.00358 * 180.02562 * 13 12 10 30 30 H 1.08000 * 125.98216 * 180.02562 * 20 19 18 31 31 H 1.07996 * 126.58400 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0658 -0.7663 -1.2285 5 6 2.2578 -2.1881 -0.6543 6 1 1.3716 -2.7958 -0.8368 7 7 3.4436 -2.8205 -1.2374 8 6 3.5663 -4.1626 -1.2250 9 8 2.6923 -4.8491 -0.7291 10 6 4.7508 -4.7947 -1.8081 11 1 5.5263 -4.1856 -2.2487 12 6 4.8786 -6.1893 -1.7948 13 7 3.9402 -6.9263 -1.2622 14 14 6.3900 -6.9959 -2.5396 15 1 7.4389 -7.1384 -1.4982 16 1 6.0276 -8.3371 -3.0640 17 1 6.9048 -6.1534 -3.6488 18 6 2.4520 -1.9667 0.8325 19 7 2.8890 -2.5701 1.9089 20 6 2.7723 -1.7443 2.9579 21 6 2.2433 -0.5871 2.5202 22 7 2.0385 -0.7289 1.1711 23 1 -0.3633 0.5247 0.8836 24 1 -0.3633 0.5028 -0.8962 25 1 -0.3633 -1.0277 0.0125 26 1 1.3346 -0.7675 -2.0369 27 1 3.0155 -0.3497 -1.5643 28 1 4.1403 -2.2734 -1.6325 29 1 4.0288 -7.8922 -1.2527 30 1 3.0531 -1.9686 3.9763 31 1 2.0222 0.2857 3.1165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627597558.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:04 Heat of formation + Delta-G solvation = 38.197458 kcal Electronic energy + Delta-G solvation = -16498.550206 eV Core-core repulsion = 13781.493839 eV Total energy + Delta-G solvation = -2717.056367 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.06509 -37.56625 -36.26984 -33.19129 -32.18359 -30.29770 -29.53241 -27.69855 -26.14847 -24.22023 -21.69696 -20.52389 -20.02317 -19.00246 -17.28636 -16.18385 -15.88101 -15.16854 -14.43868 -14.04846 -14.01788 -13.69610 -13.59839 -13.17668 -12.77841 -12.29424 -12.21652 -12.01622 -11.61131 -11.38932 -11.05681 -10.89920 -10.80245 -10.36885 -10.14897 -9.21422 -9.18682 -8.77813 -7.97537 -7.62317 -7.48676 -6.09536 -4.55303 2.44347 2.98054 3.20693 3.26748 3.29714 3.69955 4.10783 4.20999 4.58235 4.60489 4.70809 4.83433 4.95711 5.13329 5.30794 5.46330 5.47332 5.55123 5.76059 5.88105 5.93646 6.04087 6.04538 6.30385 6.72013 7.29021 7.46659 7.51394 7.91846 8.07900 8.37435 8.75370 9.10851 9.55887 10.69023 10.87641 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039718 B = 0.006719 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.801498 B = 4166.167391 C = 4482.151939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.134 3.866 3 H 0.092 0.908 4 C -0.133 4.133 5 C 0.233 3.767 6 H 0.104 0.896 7 N -0.750 5.750 8 C 0.559 3.441 9 O -0.566 6.566 10 C -0.543 4.543 11 H 0.066 0.934 12 C 0.088 3.912 13 N -0.765 5.765 14 Si 0.907 3.093 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.266 1.266 18 C 0.203 3.797 19 N -0.460 5.460 20 C -0.027 4.027 21 C -0.057 4.057 22 N -0.486 5.486 23 H 0.060 0.940 24 H 0.078 0.922 25 H 0.069 0.931 26 H 0.103 0.897 27 H 0.090 0.910 28 H 0.382 0.618 29 H 0.268 0.732 30 H 0.167 0.833 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.108 15.207 0.577 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.031 3.969 3 H 0.110 0.890 4 C -0.171 4.171 5 C 0.123 3.877 6 H 0.122 0.878 7 N -0.405 5.405 8 C 0.363 3.637 9 O -0.447 6.447 10 C -0.580 4.580 11 H 0.084 0.916 12 C -0.131 4.131 13 N -0.394 5.394 14 Si 0.731 3.269 15 H -0.198 1.198 16 H -0.205 1.205 17 H -0.190 1.190 18 C -0.063 4.063 19 N -0.177 5.177 20 C -0.176 4.176 21 C -0.188 4.188 22 N -0.172 5.172 23 H 0.080 0.920 24 H 0.096 0.904 25 H 0.088 0.912 26 H 0.121 0.879 27 H 0.108 0.892 28 H 0.214 0.786 29 H 0.078 0.922 30 H 0.184 0.816 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -4.604 13.896 1.026 14.675 hybrid contribution 0.809 0.845 -0.181 1.184 sum -3.795 14.741 0.845 15.245 Atomic orbital electron populations 1.22169 0.93245 1.03702 1.02795 1.21889 0.95255 0.96551 0.83205 0.88991 1.23091 1.03172 0.94483 0.96394 1.19505 0.93628 0.92331 0.82195 0.87823 1.46213 1.20782 1.08544 1.65000 1.18211 0.87812 0.78564 0.79134 1.90624 1.43472 1.61506 1.49055 1.20819 1.04635 0.91612 1.40959 0.91551 1.25681 0.96483 0.97386 0.93594 1.70023 1.30814 1.05520 1.33053 0.86395 0.82066 0.78690 0.79705 1.19776 1.20513 1.18993 1.25298 1.00162 0.82761 0.98042 1.70064 1.19744 1.30979 0.96879 1.22382 1.05791 0.90707 0.98729 1.22169 1.11654 1.02395 0.82574 1.46668 1.47610 1.16015 1.06921 0.92043 0.90362 0.91227 0.87850 0.89179 0.78596 0.92160 0.81552 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.47 37.16 0.35 -1.22 16 2 C 0.13 1.56 4.13 -66.92 -0.28 1.28 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.65 6.37 -25.20 -0.16 -1.81 16 5 C 0.23 4.52 3.22 -67.85 -0.22 4.30 16 6 H 0.10 2.21 7.67 -51.93 -0.40 1.81 16 7 N -0.75 -16.94 5.15 -55.14 -0.28 -17.23 16 8 C 0.56 16.21 7.74 -12.99 -0.10 16.10 16 9 O -0.57 -18.76 14.73 5.19 0.08 -18.68 16 10 C -0.54 -15.69 9.54 -35.63 -0.34 -16.03 16 11 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 12 C 0.09 2.53 5.50 -17.37 -0.10 2.43 16 13 N -0.77 -23.61 11.83 55.55 0.66 -22.95 16 14 Si 0.91 20.64 29.56 -169.99 -5.02 15.62 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 18 C 0.20 4.24 8.21 -154.85 -1.27 2.97 16 19 N -0.46 -10.86 11.26 -10.56 -0.12 -10.98 16 20 C -0.03 -0.50 11.86 -17.90 -0.21 -0.71 16 21 C -0.06 -0.87 12.04 -16.45 -0.20 -1.07 16 22 N -0.49 -7.85 3.25 -105.27 -0.34 -8.19 16 23 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.10 1.02 7.90 -51.93 -0.41 0.61 16 27 H 0.09 1.01 7.80 -51.93 -0.41 0.61 16 28 H 0.38 7.49 8.36 -40.82 -0.34 7.14 16 29 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 30 H 0.17 2.53 8.06 -52.49 -0.42 2.11 16 31 H 0.16 1.82 8.06 -52.49 -0.42 1.40 16 LS Contribution 271.73 15.07 4.09 4.09 Total: -1.00 -38.63 271.73 -7.10 -45.73 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -3.64 Total: 6.34 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -2.52 Total: 6.25 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.09 Total: -59.35 kcal Atomic # 8 Polarization: -18.76 SS G_CDS: 0.08 Total: -18.68 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -38.63 -7.10 -45.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597558.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.923 kcal (2) G-P(sol) polarization free energy of solvation -38.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds