Wall clock time and date at job start Sun Mar 29 2020 22:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 110.20556 * 2 1 4 4 C 1.54386 * 110.30796 * 238.04701 * 2 1 3 5 5 C 1.54533 * 101.77666 * 266.66571 * 4 2 1 6 6 H 1.08997 * 110.47728 * 93.52318 * 5 4 2 7 7 N 1.46498 * 110.48057 * 216.14836 * 5 4 2 8 8 C 1.34775 * 119.99696 * 201.27909 * 7 5 4 9 9 O 1.21695 * 120.00353 * 359.97438 * 8 7 5 10 10 C 1.46376 * 119.99873 * 179.97438 * 8 7 5 11 11 H 1.08000 * 120.00028 * 359.97438 * 10 8 7 12 12 C 1.40051 * 119.99828 * 179.97438 * 10 8 7 13 13 N 1.30669 * 120.00423 * 0.02562 * 12 10 8 14 14 Si 1.86810 * 119.99673 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47081 * 90.00280 * 14 12 10 16 16 H 1.48497 * 109.47019 * 210.00349 * 14 12 10 17 17 H 1.48498 * 109.47129 * 329.99959 * 14 12 10 18 18 C 1.51567 * 104.24103 * 334.83799 * 5 4 2 19 19 N 1.30915 * 141.44389 * 196.67260 * 18 5 4 20 20 C 1.34009 * 109.29808 * 179.74235 * 19 18 5 21 21 C 1.34557 * 108.03498 * 0.05576 * 20 19 18 22 22 N 1.34818 * 109.94897 * 16.54372 * 18 5 4 23 23 H 1.08995 * 109.47119 * 300.70171 * 1 2 3 24 24 H 1.08995 * 109.47129 * 60.70663 * 1 2 3 25 25 H 1.09006 * 109.46751 * 180.69900 * 1 2 3 26 26 H 1.09005 * 110.96784 * 24.79093 * 4 2 1 27 27 H 1.09003 * 110.96824 * 148.54640 * 4 2 1 28 28 H 0.96999 * 119.99895 * 21.27342 * 7 5 4 29 29 H 0.97000 * 120.00358 * 180.02562 * 13 12 10 30 30 H 1.08000 * 125.98216 * 180.02562 * 20 19 18 31 31 H 1.07996 * 126.58400 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0658 -0.7663 -1.2285 5 6 2.2578 -2.1881 -0.6543 6 1 1.3716 -2.7958 -0.8368 7 7 3.4436 -2.8205 -1.2374 8 6 3.5663 -4.1626 -1.2250 9 8 2.6923 -4.8491 -0.7291 10 6 4.7508 -4.7947 -1.8081 11 1 5.5263 -4.1856 -2.2487 12 6 4.8786 -6.1893 -1.7948 13 7 3.9402 -6.9263 -1.2622 14 14 6.3900 -6.9959 -2.5396 15 1 7.4389 -7.1384 -1.4982 16 1 6.0276 -8.3371 -3.0640 17 1 6.9048 -6.1534 -3.6488 18 6 2.4520 -1.9667 0.8325 19 7 2.8890 -2.5701 1.9089 20 6 2.7723 -1.7443 2.9579 21 6 2.2433 -0.5871 2.5202 22 7 2.0385 -0.7289 1.1711 23 1 -0.3633 0.5247 0.8836 24 1 -0.3633 0.5028 -0.8962 25 1 -0.3633 -1.0277 0.0125 26 1 1.3346 -0.7675 -2.0369 27 1 3.0155 -0.3497 -1.5643 28 1 4.1403 -2.2734 -1.6325 29 1 4.0288 -7.8922 -1.2527 30 1 3.0531 -1.9686 3.9763 31 1 2.0222 0.2857 3.1165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627597558.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:03 Heat of formation + Delta-G solvation = 8.234201 kcal Electronic energy + Delta-G solvation = -16499.849510 eV Core-core repulsion = 13781.493839 eV Total energy + Delta-G solvation = -2718.355672 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.39396 -39.42690 -37.76991 -35.02466 -34.32005 -31.71430 -30.85700 -29.09744 -28.03859 -25.54333 -22.92216 -22.31979 -21.41223 -20.57383 -19.26239 -17.56821 -17.45703 -16.95759 -15.89792 -15.80263 -15.38719 -15.21917 -14.80489 -14.50507 -14.24437 -13.92472 -13.66038 -13.20595 -13.01923 -12.97727 -12.72661 -12.60737 -12.26026 -12.03176 -11.90725 -10.91629 -10.68928 -10.53807 -9.85371 -9.59788 -9.26002 -8.25134 -6.82448 1.11968 1.40011 1.42954 1.57481 1.84855 2.20664 2.29113 2.51149 2.92665 3.23008 3.45377 3.68857 3.84278 3.85432 4.14805 4.18805 4.36639 4.52485 4.69821 4.73792 4.79103 4.89441 4.92697 5.21004 5.34028 5.41650 5.88767 5.95095 6.13725 6.26344 6.29902 6.89781 7.35650 7.55801 8.54852 8.72647 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.039718 B = 0.006719 C = 0.006245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.801498 B = 4166.167391 C = 4482.151939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.130 3.870 3 H 0.135 0.865 4 C -0.116 4.116 5 C 0.224 3.776 6 H 0.068 0.932 7 N -0.739 5.739 8 C 0.544 3.456 9 O -0.621 6.621 10 C -0.574 4.574 11 H 0.087 0.913 12 C 0.027 3.973 13 N -0.823 5.823 14 Si 0.999 3.001 15 H -0.267 1.267 16 H -0.272 1.272 17 H -0.244 1.244 18 C 0.159 3.841 19 N -0.534 5.534 20 C -0.066 4.066 21 C -0.022 4.022 22 N -0.473 5.473 23 H 0.071 0.929 24 H 0.113 0.887 25 H 0.039 0.961 26 H 0.133 0.867 27 H 0.109 0.891 28 H 0.397 0.603 29 H 0.273 0.727 30 H 0.183 0.817 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.373 18.369 -0.397 18.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.030 3.970 3 H 0.153 0.847 4 C -0.154 4.154 5 C 0.115 3.885 6 H 0.086 0.914 7 N -0.393 5.393 8 C 0.348 3.652 9 O -0.507 6.507 10 C -0.611 4.611 11 H 0.106 0.894 12 C -0.188 4.188 13 N -0.453 5.453 14 Si 0.818 3.182 15 H -0.191 1.191 16 H -0.196 1.196 17 H -0.167 1.167 18 C -0.106 4.106 19 N -0.253 5.253 20 C -0.214 4.214 21 C -0.155 4.155 22 N -0.158 5.158 23 H 0.090 0.910 24 H 0.132 0.868 25 H 0.058 0.942 26 H 0.151 0.849 27 H 0.128 0.872 28 H 0.231 0.769 29 H 0.083 0.917 30 H 0.200 0.800 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.876 17.152 0.020 17.585 hybrid contribution 0.506 -0.041 0.204 0.547 sum -3.370 17.111 0.225 17.442 Atomic orbital electron populations 1.22186 0.91654 1.02451 1.05143 1.22345 0.96457 0.97627 0.80602 0.84715 1.23168 1.05262 0.89407 0.97551 1.19758 0.90567 0.95588 0.82618 0.91439 1.45756 1.22302 1.06963 1.64312 1.18558 0.87456 0.80542 0.78610 1.90573 1.45238 1.63590 1.51314 1.21420 1.05315 0.92867 1.41456 0.89446 1.27003 1.00415 0.97940 0.93454 1.70213 1.33982 1.06151 1.34934 0.85016 0.76492 0.77621 0.79086 1.19149 1.19648 1.16719 1.25199 1.02449 0.84953 0.98003 1.69884 1.22042 1.34194 0.99221 1.22843 1.07971 0.91764 0.98824 1.22864 1.07801 1.02478 0.82326 1.46965 1.46022 1.14737 1.08069 0.90972 0.86802 0.94210 0.84886 0.87232 0.76851 0.91739 0.79953 0.76663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.47 71.98 0.68 -1.81 16 2 C 0.13 2.53 4.13 45.36 0.19 2.71 16 3 H 0.14 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -2.57 6.37 31.59 0.20 -2.37 16 5 C 0.22 8.88 3.22 45.04 0.14 9.03 16 6 H 0.07 3.10 7.67 -2.39 -0.02 3.08 16 7 N -0.74 -34.34 5.15 -446.58 -2.30 -36.64 16 8 C 0.54 33.09 7.74 86.36 0.67 33.76 16 9 O -0.62 -44.01 14.73 -4.33 -0.06 -44.07 16 10 C -0.57 -33.97 9.54 24.83 0.24 -33.74 16 11 H 0.09 4.60 7.85 -2.91 -0.02 4.58 16 12 C 0.03 1.55 5.50 85.31 0.47 2.02 16 13 N -0.82 -53.05 11.83 21.84 0.26 -52.79 16 14 Si 1.00 42.78 29.56 68.60 2.03 44.80 16 15 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 16 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 17 H -0.24 -9.52 7.11 99.48 0.71 -8.81 16 18 C 0.16 6.81 8.21 138.35 1.14 7.94 16 19 N -0.53 -26.41 11.26 -187.32 -2.11 -28.52 16 20 C -0.07 -2.46 11.86 83.52 0.99 -1.47 16 21 C -0.02 -0.62 12.04 83.01 1.00 0.38 16 22 N -0.47 -14.31 3.25 -486.96 -1.58 -15.89 16 23 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 26 H 0.13 2.16 7.90 -2.38 -0.02 2.14 16 27 H 0.11 2.04 7.80 -2.39 -0.02 2.02 16 28 H 0.40 15.57 8.36 -92.71 -0.78 14.79 16 29 H 0.27 15.94 8.29 -92.71 -0.77 15.17 16 30 H 0.18 5.65 8.06 -2.91 -0.02 5.63 16 31 H 0.22 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -93.06 271.73 2.32 -90.75 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 0.37 Total: 25.92 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.72 Total: 16.45 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -5.73 Total: -133.84 kcal Atomic # 8 Polarization: -44.01 SS G_CDS: -0.06 Total: -44.07 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Total: -93.06 2.32 -90.75 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597558.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.980 kcal (2) G-P(sol) polarization free energy of solvation -93.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds