Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.20213 * 2 1 4 4 C 1.54738 * 110.32792 * 121.91263 * 2 1 3 5 5 C 1.54540 * 101.61033 * 93.32269 * 4 2 1 6 6 H 1.08998 * 110.47945 * 143.94612 * 5 4 2 7 7 N 1.46507 * 110.47746 * 266.43941 * 5 4 2 8 8 C 1.34774 * 119.99594 * 203.18211 * 7 5 4 9 9 O 1.21681 * 120.00571 * 0.02562 * 8 7 5 10 10 C 1.46377 * 119.99306 * 179.97438 * 8 7 5 11 11 H 1.07991 * 120.00498 * 359.72725 * 10 8 7 12 12 C 1.40055 * 119.99662 * 180.02562 * 10 8 7 13 13 N 1.30678 * 119.99850 * 359.72880 * 12 10 8 14 14 Si 1.86798 * 119.99788 * 179.72946 * 12 10 8 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00201 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99760 * 14 12 10 18 18 C 1.51568 * 104.36019 * 25.19009 * 5 4 2 19 19 N 1.30908 * 141.44811 * 163.40056 * 18 5 4 20 20 C 1.34003 * 109.30113 * 180.21135 * 19 18 5 21 21 C 1.34560 * 108.03765 * 359.89474 * 20 19 18 22 22 N 1.34815 * 109.94391 * 343.40806 * 18 5 4 23 23 H 1.09000 * 109.46940 * 180.45541 * 1 2 3 24 24 H 1.08999 * 109.47213 * 300.45173 * 1 2 3 25 25 H 1.08990 * 109.47049 * 60.45465 * 1 2 3 26 26 H 1.09007 * 111.07390 * 335.24652 * 4 2 1 27 27 H 1.08999 * 111.01769 * 211.37335 * 4 2 1 28 28 H 0.96995 * 119.99641 * 23.17719 * 7 5 4 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.08009 * 125.98250 * 179.87168 * 20 19 18 31 31 H 1.07997 * 126.58345 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0676 -0.7670 1.2317 5 6 2.2579 -2.1879 0.6545 6 1 3.1393 -2.6606 1.0878 7 7 1.0667 -3.0047 0.9002 8 6 1.1635 -4.3489 0.9185 9 8 2.2402 -4.8841 0.7315 10 6 -0.0265 -5.1649 1.1646 11 1 -0.9811 -4.6898 1.3357 12 6 0.0740 -6.5617 1.1842 13 7 1.2292 -7.1365 0.9776 14 14 -1.4432 -7.6028 1.5056 15 1 -2.6177 -6.7170 1.7079 16 1 -1.6883 -8.4929 0.3425 17 1 -1.2295 -8.4264 2.7228 18 6 2.4517 -1.9668 -0.8324 19 7 2.8864 -2.5711 -1.9092 20 6 2.7701 -1.7453 -2.9581 21 6 2.2427 -0.5874 -2.5202 22 7 2.0385 -0.7290 -1.1709 23 1 -0.3633 -1.0276 0.0082 24 1 -0.3633 0.5208 0.8859 25 1 -0.3633 0.5067 -0.8940 26 1 1.3376 -0.7694 2.0412 27 1 3.0180 -0.3516 1.5667 28 1 0.2086 -2.5781 1.0497 29 1 1.2988 -8.1039 0.9908 30 1 3.0510 -1.9697 -3.9766 31 1 2.0216 0.2853 -3.1167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627597559.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = 38.571170 kcal Electronic energy + Delta-G solvation = -16651.930929 eV Core-core repulsion = 13934.890767 eV Total energy + Delta-G solvation = -2717.040162 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.07633 -37.70126 -36.18736 -33.04447 -32.18403 -30.23305 -29.77116 -27.74037 -26.22486 -24.08227 -21.69517 -20.45084 -20.20365 -19.04713 -17.34446 -16.16694 -15.85716 -15.20691 -14.39814 -14.10911 -13.94236 -13.85936 -13.59229 -13.12130 -12.64646 -12.34979 -12.13820 -11.99563 -11.63614 -11.43203 -11.05143 -10.96972 -10.70549 -10.40692 -10.16649 -9.26045 -9.18406 -8.83187 -8.05660 -7.66150 -7.51558 -6.14031 -4.60740 2.43574 3.01328 3.15750 3.23351 3.27555 3.65122 4.13066 4.16710 4.57028 4.62908 4.74486 4.83125 4.96926 5.05717 5.26456 5.49211 5.56327 5.68908 5.77525 5.85153 6.01446 6.03998 6.05210 6.31866 6.73050 7.28688 7.46306 7.47785 7.86208 8.02158 8.31906 8.72224 9.05895 9.49698 10.63977 10.82359 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.007348 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.676926 B = 3809.632161 C = 4096.783332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 H 0.092 0.908 4 C -0.134 4.134 5 C 0.229 3.771 6 H 0.106 0.894 7 N -0.751 5.751 8 C 0.554 3.446 9 O -0.561 6.561 10 C -0.544 4.544 11 H 0.066 0.934 12 C 0.087 3.913 13 N -0.763 5.763 14 Si 0.907 3.093 15 H -0.265 1.265 16 H -0.276 1.276 17 H -0.276 1.276 18 C 0.203 3.797 19 N -0.465 5.465 20 C -0.027 4.027 21 C -0.055 4.055 22 N -0.482 5.482 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.379 0.621 29 H 0.268 0.732 30 H 0.167 0.833 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.294 15.329 -0.528 15.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.029 3.971 3 H 0.110 0.890 4 C -0.172 4.172 5 C 0.119 3.881 6 H 0.124 0.876 7 N -0.407 5.407 8 C 0.358 3.642 9 O -0.442 6.442 10 C -0.581 4.581 11 H 0.085 0.915 12 C -0.133 4.133 13 N -0.392 5.392 14 Si 0.732 3.268 15 H -0.189 1.189 16 H -0.202 1.202 17 H -0.202 1.202 18 C -0.062 4.062 19 N -0.182 5.182 20 C -0.176 4.176 21 C -0.187 4.187 22 N -0.167 5.167 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.079 0.921 26 H 0.124 0.876 27 H 0.111 0.889 28 H 0.212 0.788 29 H 0.079 0.921 30 H 0.185 0.815 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.154 14.152 -0.713 14.216 hybrid contribution -1.552 0.634 -0.166 1.685 sum -2.706 14.786 -0.880 15.057 Atomic orbital electron populations 1.22227 0.93223 1.03985 1.02753 1.21979 0.95380 0.96325 0.83410 0.89039 1.23147 1.03270 0.94407 0.96407 1.19383 0.93914 0.90558 0.84238 0.87596 1.46375 1.07620 1.07424 1.79297 1.18283 0.90334 0.78756 0.76791 1.90644 1.29868 1.70649 1.53024 1.20847 0.94046 0.90847 1.52374 0.91544 1.25696 0.96406 0.98262 0.92906 1.70036 1.24087 1.10328 1.34732 0.86331 0.82156 0.79979 0.78359 1.18879 1.20187 1.20157 1.25218 1.00111 0.82739 0.98140 1.70020 1.20611 1.30668 0.96945 1.22349 1.06007 0.90585 0.98660 1.22179 1.11488 1.02441 0.82546 1.46670 1.47153 1.16042 1.06869 0.90861 0.90362 0.92086 0.87597 0.88865 0.78788 0.92125 0.81535 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 2 C 0.13 1.57 4.14 -66.74 -0.28 1.30 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.67 6.31 -25.01 -0.16 -1.82 16 5 C 0.23 4.43 3.24 -67.84 -0.22 4.21 16 6 H 0.11 2.30 7.61 -51.93 -0.40 1.91 16 7 N -0.75 -16.55 5.02 -55.13 -0.28 -16.82 16 8 C 0.55 15.89 7.74 -12.99 -0.10 15.79 16 9 O -0.56 -18.54 14.70 5.21 0.08 -18.47 16 10 C -0.54 -15.49 9.54 -35.63 -0.34 -15.83 16 11 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 12 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 13 N -0.76 -23.35 11.83 55.55 0.66 -22.69 16 14 Si 0.91 20.41 29.56 -169.99 -5.02 15.39 16 15 H -0.26 -5.72 7.11 56.52 0.40 -5.31 16 16 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 C 0.20 4.24 8.22 -154.86 -1.27 2.97 16 19 N -0.46 -10.84 11.26 -10.56 -0.12 -10.96 16 20 C -0.03 -0.49 11.86 -17.90 -0.21 -0.70 16 21 C -0.05 -0.85 12.04 -16.45 -0.20 -1.05 16 22 N -0.48 -7.85 3.25 -105.07 -0.34 -8.19 16 23 H 0.07 0.97 6.40 -51.93 -0.33 0.64 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.11 1.11 7.82 -51.93 -0.41 0.71 16 27 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.38 7.19 6.94 -40.82 -0.28 6.91 16 29 H 0.27 7.43 8.29 -40.82 -0.34 7.09 16 30 H 0.17 2.51 8.06 -52.48 -0.42 2.08 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -38.14 268.60 -7.00 -45.14 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -3.50 Total: 6.73 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: -2.52 Total: 5.83 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: -0.08 Total: -58.68 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: 0.08 Total: -18.47 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -38.14 -7.00 -45.14 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597559.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.716 kcal (2) G-P(sol) polarization free energy of solvation -38.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds