Wall clock time and date at job start Sun Mar 29 2020 22:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 110.20213 * 2 1 4 4 C 1.54738 * 110.32792 * 121.91263 * 2 1 3 5 5 C 1.54540 * 101.61033 * 93.32269 * 4 2 1 6 6 H 1.08998 * 110.47945 * 143.94612 * 5 4 2 7 7 N 1.46507 * 110.47746 * 266.43941 * 5 4 2 8 8 C 1.34774 * 119.99594 * 203.18211 * 7 5 4 9 9 O 1.21681 * 120.00571 * 0.02562 * 8 7 5 10 10 C 1.46377 * 119.99306 * 179.97438 * 8 7 5 11 11 H 1.07991 * 120.00498 * 359.72725 * 10 8 7 12 12 C 1.40055 * 119.99662 * 180.02562 * 10 8 7 13 13 N 1.30678 * 119.99850 * 359.72880 * 12 10 8 14 14 Si 1.86798 * 119.99788 * 179.72946 * 12 10 8 15 15 H 1.48490 * 109.47339 * 359.97438 * 14 12 10 16 16 H 1.48493 * 109.47239 * 120.00201 * 14 12 10 17 17 H 1.48504 * 109.46636 * 239.99760 * 14 12 10 18 18 C 1.51568 * 104.36019 * 25.19009 * 5 4 2 19 19 N 1.30908 * 141.44811 * 163.40056 * 18 5 4 20 20 C 1.34003 * 109.30113 * 180.21135 * 19 18 5 21 21 C 1.34560 * 108.03765 * 359.89474 * 20 19 18 22 22 N 1.34815 * 109.94391 * 343.40806 * 18 5 4 23 23 H 1.09000 * 109.46940 * 180.45541 * 1 2 3 24 24 H 1.08999 * 109.47213 * 300.45173 * 1 2 3 25 25 H 1.08990 * 109.47049 * 60.45465 * 1 2 3 26 26 H 1.09007 * 111.07390 * 335.24652 * 4 2 1 27 27 H 1.08999 * 111.01769 * 211.37335 * 4 2 1 28 28 H 0.96995 * 119.99641 * 23.17719 * 7 5 4 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.08009 * 125.98250 * 179.87168 * 20 19 18 31 31 H 1.07997 * 126.58345 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9065 1.0230 0.0000 4 6 2.0676 -0.7670 1.2317 5 6 2.2579 -2.1879 0.6545 6 1 3.1393 -2.6606 1.0878 7 7 1.0667 -3.0047 0.9002 8 6 1.1635 -4.3489 0.9185 9 8 2.2402 -4.8841 0.7315 10 6 -0.0265 -5.1649 1.1646 11 1 -0.9811 -4.6898 1.3357 12 6 0.0740 -6.5617 1.1842 13 7 1.2292 -7.1365 0.9776 14 14 -1.4432 -7.6028 1.5056 15 1 -2.6177 -6.7170 1.7079 16 1 -1.6883 -8.4929 0.3425 17 1 -1.2295 -8.4264 2.7228 18 6 2.4517 -1.9668 -0.8324 19 7 2.8864 -2.5711 -1.9092 20 6 2.7701 -1.7453 -2.9581 21 6 2.2427 -0.5874 -2.5202 22 7 2.0385 -0.7290 -1.1709 23 1 -0.3633 -1.0276 0.0082 24 1 -0.3633 0.5208 0.8859 25 1 -0.3633 0.5067 -0.8940 26 1 1.3376 -0.7694 2.0412 27 1 3.0180 -0.3516 1.5667 28 1 0.2086 -2.5781 1.0497 29 1 1.2988 -8.1039 0.9908 30 1 3.0510 -1.9697 -3.9766 31 1 2.0216 0.2853 -3.1167 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627597559.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:06 Heat of formation + Delta-G solvation = 9.150738 kcal Electronic energy + Delta-G solvation = -16653.206695 eV Core-core repulsion = 13934.890767 eV Total energy + Delta-G solvation = -2718.315928 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.40981 -39.51197 -37.76399 -34.89894 -34.23471 -31.71869 -31.02349 -29.10864 -28.14794 -25.41367 -22.94546 -22.18571 -21.67332 -20.54600 -19.27647 -17.59467 -17.47324 -16.96749 -15.92060 -15.58115 -15.52096 -15.36840 -14.76661 -14.47377 -14.31673 -13.86284 -13.44565 -13.31740 -13.03370 -12.93361 -12.76978 -12.66250 -12.31117 -11.97989 -11.82596 -10.95035 -10.72709 -10.53674 -9.90681 -9.64085 -9.27082 -8.27057 -6.85192 1.09931 1.39023 1.40256 1.57635 1.87855 2.15210 2.27615 2.48822 2.99604 3.17226 3.45666 3.65506 3.81117 3.87277 4.10205 4.19634 4.49726 4.53590 4.71382 4.76164 4.82346 4.87420 4.91715 5.21344 5.32079 5.42255 5.86031 5.94013 6.14838 6.22841 6.28290 6.87385 7.32793 7.52979 8.52225 8.70093 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033378 B = 0.007348 C = 0.006833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 838.676926 B = 3809.632161 C = 4096.783332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.127 3.873 3 H 0.137 0.863 4 C -0.116 4.116 5 C 0.219 3.781 6 H 0.064 0.936 7 N -0.736 5.736 8 C 0.539 3.461 9 O -0.620 6.620 10 C -0.572 4.572 11 H 0.089 0.911 12 C 0.025 3.975 13 N -0.822 5.822 14 Si 0.999 3.001 15 H -0.244 1.244 16 H -0.273 1.273 17 H -0.266 1.266 18 C 0.159 3.841 19 N -0.537 5.537 20 C -0.065 4.065 21 C -0.023 4.023 22 N -0.469 5.469 23 H 0.040 0.960 24 H 0.115 0.885 25 H 0.069 0.931 26 H 0.131 0.869 27 H 0.118 0.882 28 H 0.396 0.604 29 H 0.273 0.727 30 H 0.185 0.815 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.792 18.293 -0.084 18.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.027 3.973 3 H 0.154 0.846 4 C -0.154 4.154 5 C 0.110 3.890 6 H 0.082 0.918 7 N -0.391 5.391 8 C 0.343 3.657 9 O -0.505 6.505 10 C -0.609 4.609 11 H 0.107 0.893 12 C -0.190 4.190 13 N -0.452 5.452 14 Si 0.818 3.182 15 H -0.166 1.166 16 H -0.199 1.199 17 H -0.190 1.190 18 C -0.106 4.106 19 N -0.256 5.256 20 C -0.213 4.213 21 C -0.156 4.156 22 N -0.153 5.153 23 H 0.060 0.940 24 H 0.133 0.867 25 H 0.088 0.912 26 H 0.149 0.851 27 H 0.137 0.863 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.202 0.798 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.686 17.210 -0.242 17.602 hybrid contribution -0.716 -0.181 -0.370 0.826 sum -4.402 17.028 -0.611 17.599 Atomic orbital electron populations 1.22251 0.91940 1.02550 1.05063 1.22433 0.96325 0.97590 0.80941 0.84558 1.23224 1.05600 0.89255 0.97307 1.19623 0.91053 0.93713 0.84654 0.91750 1.45880 1.09491 1.05889 1.77881 1.18664 0.89771 0.81014 0.76274 1.90596 1.31790 1.72620 1.55506 1.21432 0.94885 0.91926 1.52625 0.89333 1.27027 1.00410 0.99823 0.91712 1.70228 1.27576 1.11042 1.36309 0.84958 0.77208 0.77640 0.78370 1.16649 1.19853 1.19035 1.25118 1.02437 0.84941 0.98075 1.69852 1.22653 1.33871 0.99264 1.22835 1.08026 0.91578 0.98817 1.22879 1.07791 1.02577 0.82304 1.46965 1.45569 1.14786 1.07990 0.94049 0.86684 0.91196 0.85089 0.86326 0.76844 0.91703 0.79810 0.76727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.48 71.98 0.68 -2.06 16 2 C 0.13 2.51 4.14 45.49 0.19 2.70 16 3 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -2.58 6.31 31.71 0.20 -2.38 16 5 C 0.22 8.70 3.24 45.04 0.15 8.84 16 6 H 0.06 3.04 7.61 -2.39 -0.02 3.02 16 7 N -0.74 -33.28 5.02 -446.56 -2.24 -35.52 16 8 C 0.54 32.35 7.74 86.36 0.67 33.02 16 9 O -0.62 -43.78 14.70 -4.29 -0.06 -43.85 16 10 C -0.57 -33.27 9.54 24.83 0.24 -33.04 16 11 H 0.09 4.56 7.85 -2.92 -0.02 4.54 16 12 C 0.03 1.44 5.50 85.31 0.47 1.91 16 13 N -0.82 -52.56 11.83 21.84 0.26 -52.30 16 14 Si 1.00 42.17 29.56 68.60 2.03 44.19 16 15 H -0.24 -9.34 7.11 99.48 0.71 -8.64 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 17 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 18 C 0.16 6.80 8.22 138.36 1.14 7.94 16 19 N -0.54 -26.26 11.26 -187.32 -2.11 -28.36 16 20 C -0.06 -2.38 11.86 83.52 0.99 -1.39 16 21 C -0.02 -0.64 12.04 83.01 1.00 0.36 16 22 N -0.47 -14.24 3.25 -486.33 -1.58 -15.82 16 23 H 0.04 0.99 6.40 -2.39 -0.02 0.97 16 24 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.13 2.26 7.82 -2.38 -0.02 2.24 16 27 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.40 14.92 6.94 -92.71 -0.64 14.28 16 29 H 0.27 15.81 8.29 -92.71 -0.77 15.04 16 30 H 0.18 5.60 8.06 -2.91 -0.02 5.58 16 31 H 0.22 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -92.22 268.60 2.52 -89.70 By element: Atomic # 1 Polarization: 25.54 SS G_CDS: 0.51 Total: 26.05 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: 5.72 Total: 15.91 kcal Atomic # 7 Polarization: -126.33 SS G_CDS: -5.67 Total: -132.01 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.06 Total: -43.85 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.19 kcal Total: -92.22 2.52 -89.70 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597559.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.850 kcal (2) G-P(sol) polarization free energy of solvation -92.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds