Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.20394 * 2 1 4 4 C 1.54388 * 110.23430 * 238.10671 * 2 1 3 5 5 C 1.54540 * 101.76978 * 266.69386 * 4 2 1 6 6 H 1.08999 * 110.47333 * 216.00424 * 5 4 2 7 7 N 1.46507 * 110.47609 * 93.51973 * 5 4 2 8 8 C 1.34774 * 119.99594 * 156.81792 * 7 5 4 9 9 O 1.21681 * 120.00571 * 0.02562 * 8 7 5 10 10 C 1.46377 * 119.99306 * 179.97438 * 8 7 5 11 11 H 1.07991 * 120.00498 * 359.72725 * 10 8 7 12 12 C 1.40055 * 119.99662 * 180.02562 * 10 8 7 13 13 N 1.30678 * 119.99850 * 359.72880 * 12 10 8 14 14 Si 1.86798 * 119.99788 * 179.72946 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99904 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99489 * 14 12 10 18 18 C 1.51560 * 104.35669 * 334.76234 * 5 4 2 19 19 N 1.30697 * 141.69000 * 196.47122 * 18 5 4 20 20 C 1.34010 * 109.42030 * 179.89083 * 19 18 5 21 21 C 1.34564 * 108.02889 * 0.13514 * 20 19 18 22 22 N 1.35140 * 109.77001 * 16.62873 * 18 5 4 23 23 H 1.09003 * 109.47154 * 181.89627 * 1 2 3 24 24 H 1.09002 * 109.47053 * 301.89322 * 1 2 3 25 25 H 1.09005 * 109.47387 * 61.89630 * 1 2 3 26 26 H 1.09003 * 110.97174 * 148.57503 * 4 2 1 27 27 H 1.09003 * 110.97039 * 24.81368 * 4 2 1 28 28 H 0.96995 * 119.99641 * 336.81300 * 7 5 4 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.98536 * 180.10794 * 20 19 18 31 31 H 1.07997 * 126.58206 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9064 1.0230 0.0000 4 6 2.0640 -0.7654 -1.2299 5 6 2.2548 -2.1880 -0.6574 6 1 3.1348 -2.6600 -1.0945 7 7 1.0625 -3.0034 -0.9025 8 6 1.1584 -4.3475 -0.9251 9 8 2.2350 -4.8840 -0.7415 10 6 -0.0331 -5.1620 -1.1694 11 1 -0.9895 -4.6862 -1.3271 12 6 0.0664 -6.5589 -1.1923 13 7 1.2237 -7.1347 -1.0009 14 14 -1.4554 -7.5986 -1.4966 15 1 -2.0307 -7.2580 -2.8226 16 1 -1.0854 -9.0366 -1.4714 17 1 -2.4599 -7.3278 -0.4368 18 6 2.4527 -1.9714 0.8295 19 7 2.8863 -2.5743 1.9050 20 6 2.7717 -1.7496 2.9550 21 6 2.2444 -0.5909 2.5189 22 7 2.0385 -0.7308 1.1698 23 1 -0.3634 -1.0271 0.0340 24 1 -0.3633 0.5430 0.8725 25 1 -0.3634 0.4841 -0.9065 26 1 3.0138 -0.3495 -1.5660 27 1 1.3320 -0.7649 -2.0376 28 1 0.2042 -2.5757 -1.0484 29 1 1.2926 -8.1022 -1.0172 30 1 3.0527 -1.9755 3.9730 31 1 2.0252 0.2817 3.1163 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001627597560.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = 38.363373 kcal Electronic energy + Delta-G solvation = -16652.054320 eV Core-core repulsion = 13935.005147 eV Total energy + Delta-G solvation = -2717.049173 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.06258 -37.70654 -36.19732 -33.04409 -32.18278 -30.24168 -29.76256 -27.74276 -26.22417 -24.08835 -21.69076 -20.44159 -20.20380 -19.04916 -17.34176 -16.16491 -15.85591 -15.19924 -14.39930 -14.10911 -13.94537 -13.87217 -13.59743 -13.11725 -12.64514 -12.33602 -12.13618 -11.99456 -11.63085 -11.43065 -11.07170 -10.93465 -10.70526 -10.39974 -10.21697 -9.25928 -9.18626 -8.81655 -8.05715 -7.66118 -7.51919 -6.13629 -4.60714 2.43288 3.01647 3.18363 3.23105 3.24985 3.65380 4.13309 4.17089 4.57059 4.62969 4.74841 4.83047 4.97321 5.06073 5.26643 5.49382 5.56303 5.69036 5.77624 5.85302 6.01403 6.04003 6.05292 6.31894 6.72633 7.29162 7.46169 7.47743 7.86155 8.02160 8.31417 8.72741 9.05774 9.49801 10.64244 10.82504 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033355 B = 0.007347 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.254211 B = 3810.104179 C = 4094.683578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.132 3.868 3 H 0.092 0.908 4 C -0.134 4.134 5 C 0.229 3.771 6 H 0.106 0.894 7 N -0.751 5.751 8 C 0.555 3.445 9 O -0.562 6.562 10 C -0.545 4.545 11 H 0.065 0.935 12 C 0.088 3.912 13 N -0.764 5.764 14 Si 0.907 3.093 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.269 1.269 18 C 0.204 3.796 19 N -0.465 5.465 20 C -0.028 4.028 21 C -0.053 4.053 22 N -0.485 5.485 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.379 0.621 29 H 0.269 0.731 30 H 0.167 0.833 31 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.272 15.299 0.587 15.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.030 3.970 3 H 0.110 0.890 4 C -0.173 4.173 5 C 0.120 3.880 6 H 0.124 0.876 7 N -0.407 5.407 8 C 0.359 3.641 9 O -0.442 6.442 10 C -0.582 4.582 11 H 0.084 0.916 12 C -0.132 4.132 13 N -0.392 5.392 14 Si 0.732 3.268 15 H -0.193 1.193 16 H -0.205 1.205 17 H -0.194 1.194 18 C -0.061 4.061 19 N -0.182 5.182 20 C -0.177 4.177 21 C -0.185 4.185 22 N -0.170 5.170 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.124 0.876 28 H 0.212 0.788 29 H 0.080 0.920 30 H 0.185 0.815 31 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -1.128 14.115 0.771 14.181 hybrid contribution -1.573 0.650 0.180 1.712 sum -2.701 14.765 0.951 15.040 Atomic orbital electron populations 1.22236 0.93249 1.03966 1.02761 1.21902 0.95379 0.96304 0.83445 0.89036 1.23090 1.03303 0.94420 0.96458 1.19375 0.93873 0.90553 0.84244 0.87592 1.46369 1.07544 1.07445 1.79354 1.18263 0.90333 0.78746 0.76778 1.90644 1.29899 1.70573 1.53093 1.20778 0.93823 0.90878 1.52714 0.91638 1.25689 0.96431 0.98227 0.92891 1.70013 1.24131 1.10456 1.34610 0.86445 0.82170 0.78756 0.79415 1.19316 1.20526 1.19394 1.25238 1.00094 0.82660 0.98113 1.69889 1.20555 1.30783 0.96979 1.22342 1.06143 0.90570 0.98622 1.22179 1.11264 1.02399 0.82611 1.46777 1.47299 1.16088 1.06850 0.90866 0.92113 0.90347 0.88878 0.87609 0.78791 0.92006 0.81535 0.81877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.76 9.44 37.16 0.35 -1.41 16 2 C 0.13 1.58 4.14 -66.93 -0.28 1.31 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.13 -1.67 6.28 -25.20 -0.16 -1.83 16 5 C 0.23 4.44 3.24 -67.85 -0.22 4.22 16 6 H 0.11 2.30 7.61 -51.93 -0.40 1.91 16 7 N -0.75 -16.55 5.03 -55.13 -0.28 -16.83 16 8 C 0.55 15.91 7.74 -12.99 -0.10 15.81 16 9 O -0.56 -18.55 14.70 5.21 0.08 -18.47 16 10 C -0.55 -15.52 9.54 -35.63 -0.34 -15.86 16 11 H 0.07 1.69 7.85 -52.49 -0.41 1.28 16 12 C 0.09 2.49 5.50 -17.36 -0.10 2.39 16 13 N -0.76 -23.37 11.83 55.55 0.66 -22.71 16 14 Si 0.91 20.42 29.56 -169.99 -5.02 15.40 16 15 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 18 C 0.20 4.26 8.24 -154.74 -1.27 2.99 16 19 N -0.46 -10.83 11.24 -10.53 -0.12 -10.95 16 20 C -0.03 -0.51 11.86 -17.90 -0.21 -0.72 16 21 C -0.05 -0.82 12.04 -16.45 -0.20 -1.02 16 22 N -0.48 -7.89 3.26 -105.24 -0.34 -8.23 16 23 H 0.07 0.98 6.49 -51.93 -0.34 0.64 16 24 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.11 1.11 7.81 -51.93 -0.41 0.71 16 28 H 0.38 7.19 7.00 -40.82 -0.29 6.91 16 29 H 0.27 7.50 8.29 -40.82 -0.34 7.16 16 30 H 0.17 2.51 8.06 -52.49 -0.42 2.08 16 31 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 268.68 15.07 4.05 4.05 Total: -1.00 -38.08 268.68 -7.01 -45.09 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -3.51 Total: 6.78 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -2.53 Total: 5.88 kcal Atomic # 7 Polarization: -58.64 SS G_CDS: -0.08 Total: -58.72 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.08 Total: -18.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -38.08 -7.01 -45.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597560.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.456 kcal (2) G-P(sol) polarization free energy of solvation -38.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds