Wall clock time and date at job start Sun Mar 29 2020 22:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.20394 * 2 1 4 4 C 1.54388 * 110.23430 * 238.10671 * 2 1 3 5 5 C 1.54540 * 101.76978 * 266.69386 * 4 2 1 6 6 H 1.08999 * 110.47333 * 216.00424 * 5 4 2 7 7 N 1.46507 * 110.47609 * 93.51973 * 5 4 2 8 8 C 1.34774 * 119.99594 * 156.81792 * 7 5 4 9 9 O 1.21681 * 120.00571 * 0.02562 * 8 7 5 10 10 C 1.46377 * 119.99306 * 179.97438 * 8 7 5 11 11 H 1.07991 * 120.00498 * 359.72725 * 10 8 7 12 12 C 1.40055 * 119.99662 * 180.02562 * 10 8 7 13 13 N 1.30678 * 119.99850 * 359.72880 * 12 10 8 14 14 Si 1.86798 * 119.99788 * 179.72946 * 12 10 8 15 15 H 1.48498 * 109.47416 * 59.99904 * 14 12 10 16 16 H 1.48508 * 109.46609 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.46903 * 299.99489 * 14 12 10 18 18 C 1.51560 * 104.35669 * 334.76234 * 5 4 2 19 19 N 1.30697 * 141.69000 * 196.47122 * 18 5 4 20 20 C 1.34010 * 109.42030 * 179.89083 * 19 18 5 21 21 C 1.34564 * 108.02889 * 0.13514 * 20 19 18 22 22 N 1.35140 * 109.77001 * 16.62873 * 18 5 4 23 23 H 1.09003 * 109.47154 * 181.89627 * 1 2 3 24 24 H 1.09002 * 109.47053 * 301.89322 * 1 2 3 25 25 H 1.09005 * 109.47387 * 61.89630 * 1 2 3 26 26 H 1.09003 * 110.97174 * 148.57503 * 4 2 1 27 27 H 1.09003 * 110.97039 * 24.81368 * 4 2 1 28 28 H 0.96995 * 119.99641 * 336.81300 * 7 5 4 29 29 H 0.97000 * 119.99610 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.98536 * 180.10794 * 20 19 18 31 31 H 1.07997 * 126.58206 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9064 1.0230 0.0000 4 6 2.0640 -0.7654 -1.2299 5 6 2.2548 -2.1880 -0.6574 6 1 3.1348 -2.6600 -1.0945 7 7 1.0625 -3.0034 -0.9025 8 6 1.1584 -4.3475 -0.9251 9 8 2.2350 -4.8840 -0.7415 10 6 -0.0331 -5.1620 -1.1694 11 1 -0.9895 -4.6862 -1.3271 12 6 0.0664 -6.5589 -1.1923 13 7 1.2237 -7.1347 -1.0009 14 14 -1.4554 -7.5986 -1.4966 15 1 -2.0307 -7.2580 -2.8226 16 1 -1.0854 -9.0366 -1.4714 17 1 -2.4599 -7.3278 -0.4368 18 6 2.4527 -1.9714 0.8295 19 7 2.8863 -2.5743 1.9050 20 6 2.7717 -1.7496 2.9550 21 6 2.2444 -0.5909 2.5189 22 7 2.0385 -0.7308 1.1698 23 1 -0.3634 -1.0271 0.0340 24 1 -0.3633 0.5430 0.8725 25 1 -0.3634 0.4841 -0.9065 26 1 3.0138 -0.3495 -1.5660 27 1 1.3320 -0.7649 -2.0376 28 1 0.2042 -2.5757 -1.0484 29 1 1.2926 -8.1022 -1.0172 30 1 3.0527 -1.9755 3.9730 31 1 2.0252 0.2817 3.1163 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627597560.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:09 Heat of formation + Delta-G solvation = 8.996302 kcal Electronic energy + Delta-G solvation = -16653.327771 eV Core-core repulsion = 13935.005147 eV Total energy + Delta-G solvation = -2718.322625 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -43.39624 -39.51333 -37.77637 -34.89887 -34.23416 -31.72850 -31.01518 -29.11069 -28.14561 -25.42074 -22.94183 -22.18218 -21.66467 -20.55107 -19.27304 -17.58718 -17.47229 -16.96538 -15.92906 -15.57939 -15.52382 -15.37294 -14.77175 -14.46818 -14.30342 -13.86520 -13.43829 -13.32453 -13.03611 -12.94934 -12.70754 -12.65006 -12.31201 -12.05861 -11.83093 -10.91763 -10.72567 -10.53864 -9.91119 -9.64159 -9.26963 -8.26658 -6.85183 1.09684 1.38873 1.43416 1.54823 1.88076 2.15450 2.27854 2.48974 2.99621 3.17409 3.45703 3.66320 3.81147 3.87181 4.10259 4.19767 4.50011 4.53534 4.71250 4.76700 4.82311 4.87437 4.91569 5.21395 5.31627 5.41998 5.85912 5.94271 6.14908 6.22638 6.28364 6.87281 7.33291 7.53061 8.52275 8.70088 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.033355 B = 0.007347 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.254211 B = 3810.104179 C = 4094.683578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.128 3.872 3 H 0.137 0.863 4 C -0.116 4.116 5 C 0.219 3.781 6 H 0.064 0.936 7 N -0.736 5.736 8 C 0.539 3.461 9 O -0.620 6.620 10 C -0.574 4.574 11 H 0.089 0.911 12 C 0.026 3.974 13 N -0.822 5.822 14 Si 0.999 3.001 15 H -0.248 1.248 16 H -0.276 1.276 17 H -0.258 1.258 18 C 0.160 3.840 19 N -0.536 5.536 20 C -0.066 4.066 21 C -0.021 4.021 22 N -0.471 5.471 23 H 0.040 0.960 24 H 0.070 0.930 25 H 0.114 0.886 26 H 0.118 0.882 27 H 0.131 0.869 28 H 0.396 0.604 29 H 0.273 0.727 30 H 0.185 0.815 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.772 18.253 0.153 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.028 3.972 3 H 0.154 0.846 4 C -0.154 4.154 5 C 0.110 3.890 6 H 0.083 0.917 7 N -0.391 5.391 8 C 0.343 3.657 9 O -0.505 6.505 10 C -0.610 4.610 11 H 0.107 0.893 12 C -0.189 4.189 13 N -0.452 5.452 14 Si 0.818 3.182 15 H -0.171 1.171 16 H -0.201 1.201 17 H -0.182 1.182 18 C -0.105 4.105 19 N -0.256 5.256 20 C -0.213 4.213 21 C -0.154 4.154 22 N -0.156 5.156 23 H 0.059 0.941 24 H 0.089 0.911 25 H 0.133 0.867 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.202 0.798 31 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -3.663 17.163 0.309 17.553 hybrid contribution -0.738 -0.159 0.380 0.845 sum -4.401 17.005 0.690 17.578 Atomic orbital electron populations 1.22259 0.91966 1.02435 1.05169 1.22357 0.96325 0.97569 0.80977 0.84554 1.23167 1.05634 0.89265 0.97373 1.19615 0.91020 0.93722 0.84639 0.91738 1.45874 1.09418 1.05907 1.77938 1.18648 0.89774 0.81003 0.76265 1.90595 1.31822 1.72545 1.55571 1.21379 0.94712 0.91969 1.52948 0.89334 1.27023 1.00469 0.99782 0.91655 1.70215 1.27629 1.11080 1.36227 0.85066 0.76705 0.76188 0.80263 1.17142 1.20055 1.18227 1.25138 1.02418 0.84874 0.98056 1.69723 1.22579 1.33975 0.99291 1.22829 1.08173 0.91567 0.98775 1.22881 1.07570 1.02538 0.82368 1.47067 1.45715 1.14834 1.07969 0.94125 0.91084 0.86739 0.86341 0.85096 0.76847 0.91683 0.79809 0.76724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.44 71.98 0.68 -2.07 16 2 C 0.13 2.53 4.14 45.37 0.19 2.71 16 3 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 4 C -0.12 -2.59 6.28 31.59 0.20 -2.39 16 5 C 0.22 8.72 3.24 45.04 0.15 8.87 16 6 H 0.06 3.04 7.61 -2.39 -0.02 3.02 16 7 N -0.74 -33.29 5.03 -446.57 -2.25 -35.53 16 8 C 0.54 32.38 7.74 86.36 0.67 33.05 16 9 O -0.62 -43.80 14.70 -4.29 -0.06 -43.86 16 10 C -0.57 -33.36 9.54 24.83 0.24 -33.13 16 11 H 0.09 4.54 7.85 -2.92 -0.02 4.52 16 12 C 0.03 1.48 5.50 85.31 0.47 1.95 16 13 N -0.82 -52.59 11.83 21.84 0.26 -52.33 16 14 Si 1.00 42.13 29.56 68.60 2.03 44.16 16 15 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16 16 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 18 C 0.16 6.84 8.24 138.31 1.14 7.98 16 19 N -0.54 -26.21 11.24 -187.23 -2.10 -28.32 16 20 C -0.07 -2.42 11.86 83.52 0.99 -1.43 16 21 C -0.02 -0.58 12.04 83.01 1.00 0.42 16 22 N -0.47 -14.31 3.26 -486.88 -1.59 -15.90 16 23 H 0.04 0.98 6.49 -2.39 -0.02 0.96 16 24 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 27 H 0.13 2.26 7.81 -2.39 -0.02 2.24 16 28 H 0.40 14.92 7.00 -92.71 -0.65 14.27 16 29 H 0.27 15.91 8.29 -92.71 -0.77 15.14 16 30 H 0.18 5.60 8.06 -2.91 -0.02 5.58 16 31 H 0.22 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -92.11 268.68 2.51 -89.61 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.50 Total: 26.23 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: 5.72 Total: 15.95 kcal Atomic # 7 Polarization: -126.40 SS G_CDS: -5.68 Total: -132.08 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -0.06 Total: -43.86 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.16 kcal Total: -92.11 2.51 -89.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597560.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.605 kcal (2) G-P(sol) polarization free energy of solvation -92.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds