Wall clock time and date at job start Sun Mar 29 2020 22:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.20329 * 2 1 4 4 C 1.54382 * 110.23695 * 121.99094 * 2 1 3 5 5 C 1.54536 * 101.77551 * 144.73313 * 4 2 1 6 6 H 1.08997 * 110.59440 * 216.09331 * 5 4 2 7 7 N 1.46503 * 110.47486 * 93.52315 * 5 4 2 8 8 C 1.34767 * 119.99754 * 158.72522 * 7 5 4 9 9 O 1.21691 * 120.00187 * 0.02562 * 8 7 5 10 10 C 1.46376 * 120.00055 * 180.02562 * 8 7 5 11 11 H 1.07998 * 119.99957 * 359.97438 * 10 8 7 12 12 C 1.40052 * 120.00339 * 180.02562 * 10 8 7 13 13 N 1.30668 * 119.99903 * 359.97438 * 12 10 8 14 14 Si 1.86795 * 120.00101 * 180.02562 * 12 10 8 15 15 H 1.48496 * 109.47222 * 59.99595 * 14 12 10 16 16 H 1.48499 * 109.46993 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47248 * 299.99768 * 14 12 10 18 18 C 1.51567 * 104.24130 * 334.83823 * 5 4 2 19 19 N 1.30908 * 141.44777 * 196.66919 * 18 5 4 20 20 C 1.34001 * 109.30355 * 179.74479 * 19 18 5 21 21 C 1.34557 * 108.03373 * 0.05465 * 20 19 18 22 22 N 1.34816 * 109.94658 * 16.54289 * 18 5 4 23 23 H 1.09001 * 109.47002 * 180.44716 * 1 2 3 24 24 H 1.08993 * 109.46955 * 300.45154 * 1 2 3 25 25 H 1.09000 * 109.47050 * 60.44982 * 1 2 3 26 26 H 1.09000 * 110.96885 * 262.86049 * 4 2 1 27 27 H 1.09008 * 110.96350 * 26.61603 * 4 2 1 28 28 H 0.97002 * 119.99988 * 338.73326 * 7 5 4 29 29 H 0.97004 * 120.00435 * 180.02562 * 13 12 10 30 30 H 1.08006 * 125.98233 * 180.02562 * 20 19 18 31 31 H 1.08004 * 126.58181 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9065 1.0229 0.0000 4 6 2.0641 -0.7674 1.2285 5 6 3.3321 -1.4387 0.6544 6 1 3.4714 -2.4290 1.0878 7 7 4.5101 -0.6029 0.8996 8 6 5.7409 -1.1516 0.8825 9 8 5.8738 -2.3411 0.6630 10 6 6.9179 -0.3167 1.1281 11 1 6.8000 0.7391 1.3225 12 6 8.1970 -0.8867 1.1098 13 7 8.3398 -2.1640 0.8741 14 14 9.6989 0.1786 1.4239 15 1 9.5982 0.7909 2.7730 16 1 10.9235 -0.6580 1.3495 17 1 9.7691 1.2501 0.3980 18 6 3.0573 -1.5445 -0.8324 19 7 3.4727 -2.1629 -1.9088 20 6 2.7381 -1.7683 -2.9578 21 6 1.8347 -0.8722 -2.5201 22 7 2.0385 -0.7290 -1.1710 23 1 -0.3633 -1.0276 0.0080 24 1 -0.3633 0.5208 0.8859 25 1 -0.3633 0.5068 -0.8940 26 1 2.3177 -0.0816 2.0369 27 1 1.3451 -1.5148 1.5643 28 1 4.4041 0.3454 1.0743 29 1 9.2257 -2.5590 0.8618 30 1 2.8516 -2.1094 -3.9762 31 1 1.0919 -0.3633 -3.1165 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001627597561.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:07:12 Heat of formation + Delta-G solvation = 7.745537 kcal Electronic energy + Delta-G solvation = -16506.473981 eV Core-core repulsion = 13788.097119 eV Total energy + Delta-G solvation = -2718.376862 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.39235 -39.47159 -37.72334 -34.99178 -34.31959 -31.73135 -31.12447 -29.07905 -28.04900 -25.26859 -23.07051 -22.22864 -21.29593 -20.72236 -19.26280 -18.01780 -17.46672 -16.51449 -16.02549 -15.86965 -15.55373 -15.20461 -14.84679 -14.41630 -14.30413 -13.80280 -13.50861 -13.18282 -12.99529 -12.93873 -12.69772 -12.62226 -12.39107 -12.07599 -11.90286 -10.91624 -10.72665 -10.52043 -9.90832 -9.64620 -9.27432 -8.26453 -6.85071 1.10419 1.39262 1.43790 1.55257 1.87401 2.15247 2.28046 2.49252 3.00483 3.17591 3.44099 3.60540 3.79916 3.89377 4.10871 4.20439 4.46748 4.56948 4.69703 4.72586 4.80345 4.90011 4.98264 5.19606 5.31953 5.42059 5.85886 5.93876 6.13168 6.22389 6.28275 6.87556 7.32791 7.53545 8.52666 8.70433 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.006846 C = 0.006354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.357560 B = 4089.082430 C = 4405.272548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.124 3.876 3 H 0.110 0.890 4 C -0.114 4.114 5 C 0.220 3.780 6 H 0.064 0.936 7 N -0.738 5.738 8 C 0.539 3.461 9 O -0.619 6.619 10 C -0.574 4.574 11 H 0.090 0.910 12 C 0.026 3.974 13 N -0.823 5.823 14 Si 0.999 3.001 15 H -0.248 1.248 16 H -0.276 1.276 17 H -0.258 1.258 18 C 0.158 3.842 19 N -0.535 5.535 20 C -0.065 4.065 21 C -0.022 4.022 22 N -0.469 5.469 23 H 0.059 0.941 24 H 0.108 0.892 25 H 0.071 0.929 26 H 0.133 0.867 27 H 0.116 0.884 28 H 0.397 0.603 29 H 0.273 0.727 30 H 0.185 0.815 31 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.307 10.124 0.187 19.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.024 3.976 3 H 0.128 0.872 4 C -0.152 4.152 5 C 0.111 3.889 6 H 0.082 0.918 7 N -0.393 5.393 8 C 0.343 3.657 9 O -0.504 6.504 10 C -0.611 4.611 11 H 0.108 0.892 12 C -0.189 4.189 13 N -0.453 5.453 14 Si 0.818 3.182 15 H -0.172 1.172 16 H -0.201 1.201 17 H -0.182 1.182 18 C -0.107 4.107 19 N -0.255 5.255 20 C -0.213 4.213 21 C -0.155 4.155 22 N -0.153 5.153 23 H 0.078 0.922 24 H 0.127 0.873 25 H 0.090 0.910 26 H 0.151 0.849 27 H 0.134 0.866 28 H 0.232 0.768 29 H 0.083 0.917 30 H 0.202 0.798 31 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -15.672 8.707 0.001 17.928 hybrid contribution 0.413 0.665 -0.357 0.860 sum -15.259 9.372 -0.356 17.911 Atomic orbital electron populations 1.22059 0.89963 1.03475 1.05003 1.22422 0.97836 0.96289 0.81048 0.87189 1.23159 0.93576 1.01096 0.97324 1.19626 0.88053 0.96600 0.84618 0.91797 1.45815 1.04558 1.11314 1.77589 1.18641 0.83200 0.87469 0.76363 1.90603 1.86181 1.18663 1.54950 1.21397 0.90630 0.96546 1.52513 0.89239 1.27021 1.03975 0.96252 0.91638 1.70212 1.24881 1.14131 1.36034 0.85055 0.74931 0.77908 0.80260 1.17176 1.20078 1.18193 1.25127 0.92061 0.95417 0.98138 1.69854 1.28529 1.27828 0.99262 1.22831 0.97385 1.02243 0.98836 1.22832 1.05399 1.04942 0.82335 1.46975 1.27449 1.32911 1.07930 0.92206 0.87293 0.91012 0.84916 0.86597 0.76786 0.91680 0.79807 0.76869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.45 71.98 0.68 -1.13 16 2 C 0.12 2.51 4.13 45.37 0.19 2.70 16 3 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 4 C -0.11 -2.54 6.26 31.59 0.20 -2.34 16 5 C 0.22 8.76 3.22 45.04 0.15 8.90 16 6 H 0.06 3.01 7.66 -2.39 -0.02 2.99 16 7 N -0.74 -33.35 5.12 -446.58 -2.29 -35.64 16 8 C 0.54 32.40 7.74 86.36 0.67 33.06 16 9 O -0.62 -43.75 14.73 -4.32 -0.06 -43.81 16 10 C -0.57 -33.41 9.54 24.83 0.24 -33.18 16 11 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 12 C 0.03 1.50 5.50 85.31 0.47 1.97 16 13 N -0.82 -52.76 11.83 21.84 0.26 -52.50 16 14 Si 1.00 42.14 29.56 68.60 2.03 44.17 16 15 H -0.25 -9.59 7.11 99.48 0.71 -8.88 16 16 H -0.28 -11.31 7.11 99.48 0.71 -10.60 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 18 C 0.16 6.77 8.21 138.36 1.14 7.91 16 19 N -0.54 -26.34 11.26 -187.33 -2.11 -28.45 16 20 C -0.07 -2.41 11.86 83.52 0.99 -1.42 16 21 C -0.02 -0.63 12.00 83.01 1.00 0.36 16 22 N -0.47 -14.39 3.27 -486.96 -1.59 -15.99 16 23 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 24 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.13 2.24 8.04 -2.39 -0.02 2.22 16 27 H 0.12 2.11 7.91 -2.38 -0.02 2.09 16 28 H 0.40 14.77 8.55 -92.71 -0.79 13.98 16 29 H 0.27 15.94 8.29 -92.71 -0.77 15.17 16 30 H 0.18 5.66 8.06 -2.91 -0.02 5.64 16 31 H 0.21 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -92.13 271.98 2.30 -89.84 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.36 Total: 25.53 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 5.71 Total: 16.84 kcal Atomic # 7 Polarization: -126.84 SS G_CDS: -5.73 Total: -132.57 kcal Atomic # 8 Polarization: -43.75 SS G_CDS: -0.06 Total: -43.81 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Total: -92.13 2.30 -89.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001627597561.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.582 kcal (2) G-P(sol) polarization free energy of solvation -92.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.836 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds