Wall clock time and date at job start Sun Mar 29 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 119.99699 * 2 1 4 4 C 1.34772 * 119.99876 * 180.02562 * 2 1 3 5 5 O 1.21571 * 120.00310 * 5.27745 * 4 2 1 6 6 N 1.34773 * 119.99934 * 185.27746 * 4 2 1 7 7 C 1.39247 * 120.00236 * 184.14486 * 6 4 2 8 8 C 1.39677 * 119.57319 * 339.00005 * 7 6 4 9 9 C 1.38649 * 119.49359 * 180.02562 * 8 7 6 10 10 C 1.38356 * 118.66996 * 359.75161 * 9 8 7 11 11 C 1.40570 * 119.13093 * 0.48997 * 10 9 8 12 12 C 1.41330 * 119.78588 * 179.77012 * 11 10 9 13 13 H 1.08002 * 120.00281 * 4.85254 * 12 11 10 14 14 C 1.40034 * 119.99971 * 184.84608 * 12 11 10 15 15 N 1.30736 * 119.99963 * 184.84826 * 14 12 11 16 16 Si 1.86796 * 119.99665 * 4.84767 * 14 12 11 17 17 H 1.48503 * 109.46652 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47425 * 299.99930 * 16 14 12 19 19 H 1.48496 * 109.47329 * 60.00425 * 16 14 12 20 20 N 1.31908 * 119.57571 * 159.02105 * 7 6 4 21 21 H 1.08999 * 109.46524 * 270.00397 * 1 2 3 22 22 H 1.09002 * 109.46972 * 30.00232 * 1 2 3 23 23 H 1.09001 * 109.46951 * 150.00141 * 1 2 3 24 24 H 1.08999 * 109.46575 * 185.30402 * 3 2 1 25 25 H 1.09005 * 109.47309 * 305.29640 * 3 2 1 26 26 H 1.08997 * 109.47283 * 65.29977 * 3 2 1 27 27 H 0.97009 * 119.99876 * 4.14400 * 6 4 2 28 28 H 1.07997 * 120.25605 * 359.97438 * 8 7 6 29 29 H 1.08004 * 120.66598 * 179.97438 * 9 8 7 30 30 H 1.08003 * 120.43174 * 180.24460 * 10 9 8 31 31 H 0.97009 * 120.00144 * 354.99425 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5350 -2.2178 -0.0978 6 7 3.4824 -1.1697 0.1068 7 6 4.1856 -2.3684 0.0197 8 6 3.5244 -3.5747 0.2621 9 6 4.2264 -4.7672 0.1754 10 6 5.5689 -4.7246 -0.1563 11 6 6.1784 -3.4785 -0.3835 12 6 7.5502 -3.4186 -0.7183 13 1 8.1080 -4.3299 -0.8758 14 6 8.1862 -2.1776 -0.8460 15 7 9.4289 -2.1181 -1.2478 16 14 7.2589 -0.6070 -0.4424 17 1 8.1489 0.5622 -0.6569 18 1 6.0700 -0.4934 -1.3248 19 1 6.8210 -0.6414 0.9761 20 7 5.4676 -2.3501 -0.2904 21 1 -0.3632 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 3.2653 1.0717 -0.0950 25 1 1.8649 1.8804 -0.8388 26 1 2.0073 1.7981 0.9336 27 1 3.9595 -0.3364 0.2448 28 1 2.4747 -3.5784 0.5160 29 1 3.7341 -5.7108 0.3594 30 1 6.1420 -5.6366 -0.2356 31 1 9.9330 -2.9350 -1.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001665790918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:12 Heat of formation + Delta-G solvation = 16.103132 kcal Electronic energy + Delta-G solvation = -16463.769348 eV Core-core repulsion = 13745.754899 eV Total energy + Delta-G solvation = -2718.014449 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44585 -38.38162 -35.56154 -34.63503 -33.44800 -31.08165 -29.62851 -27.96968 -26.08183 -25.15462 -22.08844 -21.59221 -19.59971 -18.53224 -17.99654 -16.80915 -15.92919 -15.40928 -14.94646 -14.58805 -14.05644 -13.79873 -13.47602 -12.91125 -12.75701 -12.61744 -12.58101 -12.21655 -12.07044 -11.82036 -11.13353 -10.83266 -10.32230 -9.99795 -9.66153 -9.29559 -9.15188 -8.73233 -8.51911 -7.73100 -7.41802 -7.19574 -4.75278 2.40967 2.66246 2.69663 3.40593 3.50835 3.64863 3.89267 4.01399 4.39442 4.65795 4.94679 5.14106 5.20559 5.50226 5.51451 5.55539 5.73693 5.88031 6.10897 6.28058 6.47799 6.56661 6.72714 6.83338 7.19028 7.32789 7.46069 7.65330 7.78081 7.88275 8.19044 8.35310 8.65099 8.74904 9.43228 10.01348 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.009033 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.250214 B = 3099.018780 C = 4000.600389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.639 5.639 3 C 0.076 3.924 4 C 0.710 3.290 5 O -0.562 6.562 6 N -0.667 5.667 7 C 0.400 3.600 8 C -0.312 4.312 9 C -0.035 4.035 10 C -0.279 4.279 11 C 0.274 3.726 12 C -0.478 4.478 13 H 0.083 0.917 14 C 0.043 3.957 15 N -0.808 5.808 16 Si 1.153 2.847 17 H -0.333 1.333 18 H -0.280 1.280 19 H -0.295 1.295 20 N -0.601 5.601 21 H 0.051 0.949 22 H 0.068 0.932 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.402 0.598 28 H 0.148 0.852 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.134 7.053 2.776 14.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.378 5.378 3 C -0.067 4.067 4 C 0.411 3.589 5 O -0.438 6.438 6 N -0.316 5.316 7 C 0.169 3.831 8 C -0.337 4.337 9 C -0.059 4.059 10 C -0.302 4.302 11 C 0.150 3.850 12 C -0.510 4.510 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.430 5.430 16 Si 0.989 3.011 17 H -0.266 1.266 18 H -0.208 1.208 19 H -0.223 1.223 20 N -0.327 5.327 21 H 0.069 0.931 22 H 0.086 0.914 23 H 0.097 0.903 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.240 0.760 28 H 0.165 0.835 29 H 0.124 0.876 30 H 0.123 0.877 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.964 8.617 2.494 14.953 hybrid contribution -0.033 -2.162 0.116 2.165 sum -11.997 6.455 2.610 13.871 Atomic orbital electron populations 1.21483 0.77638 1.03122 1.01574 1.46934 1.07139 1.04704 1.79022 1.21803 0.97080 0.85643 1.02191 1.15666 0.81299 0.83949 0.77958 1.90791 1.67653 1.29031 1.56374 1.42533 1.05302 1.09827 1.73919 1.17845 0.88673 0.83814 0.92755 1.21775 1.02726 0.90767 1.18443 1.20962 0.93679 0.96745 0.94542 1.21597 0.95465 0.97854 1.15254 1.18258 0.92861 0.86043 0.87822 1.20708 0.93100 0.96212 1.40975 0.89864 1.27748 0.95546 1.05336 0.89124 1.70643 1.09577 1.34039 1.28705 0.81870 0.71741 0.69842 0.77636 1.26634 1.20831 1.22325 1.65941 1.06555 1.31078 1.29105 0.93060 0.91367 0.90261 0.90868 0.91436 0.91926 0.76036 0.83485 0.87601 0.87707 0.90600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.09 10.52 59.85 0.63 1.72 16 2 N -0.64 -8.53 3.27 -195.34 -0.64 -9.17 16 3 C 0.08 0.74 10.61 59.85 0.63 1.38 16 4 C 0.71 12.95 8.17 -86.93 -0.71 12.24 16 5 O -0.56 -11.85 12.55 5.30 0.07 -11.78 16 6 N -0.67 -13.16 5.28 -15.79 -0.08 -13.25 16 7 C 0.40 9.54 7.51 -154.99 -1.16 8.38 16 8 C -0.31 -7.32 8.90 -38.89 -0.35 -7.66 16 9 C -0.03 -0.79 10.15 -39.39 -0.40 -1.19 16 10 C -0.28 -6.82 9.83 -38.66 -0.38 -7.20 16 11 C 0.27 7.36 6.40 -85.00 -0.54 6.81 16 12 C -0.48 -13.21 9.57 -37.73 -0.36 -13.57 16 13 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 14 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 15 N -0.81 -22.15 13.65 55.55 0.76 -21.39 16 16 Si 1.15 27.94 25.62 -169.99 -4.35 23.58 16 17 H -0.33 -7.92 7.11 56.52 0.40 -7.51 16 18 H -0.28 -6.70 6.60 56.52 0.37 -6.33 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 20 N -0.60 -15.59 4.54 -10.26 -0.05 -15.63 16 21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 22 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 23 H 0.08 0.94 7.35 -51.93 -0.38 0.56 16 24 H 0.07 0.77 5.60 -51.93 -0.29 0.48 16 25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.40 6.99 6.32 -40.82 -0.26 6.73 16 28 H 0.15 3.41 5.16 -52.96 -0.27 3.14 16 29 H 0.11 2.03 8.06 -52.48 -0.42 1.61 16 30 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16 31 H 0.28 7.43 8.72 -40.82 -0.36 7.07 16 LS Contribution 262.71 15.07 3.96 3.96 Total: -1.00 -32.04 262.71 -6.42 -38.46 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -3.34 Total: 3.22 kcal Atomic # 6 Polarization: 4.74 SS G_CDS: -2.74 Total: 2.00 kcal Atomic # 7 Polarization: -59.43 SS G_CDS: -0.01 Total: -59.44 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal Atomic # 14 Polarization: 27.94 SS G_CDS: -4.35 Total: 23.58 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -32.04 -6.42 -38.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665790918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.564 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds