Wall clock time and date at job start Sun Mar 29 2020 22:21:12
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46508 * 1
3 3 C 1.46500 * 119.99699 * 2 1
4 4 C 1.34772 * 119.99876 * 180.02562 * 2 1 3
5 5 O 1.21571 * 120.00310 * 5.27745 * 4 2 1
6 6 N 1.34773 * 119.99934 * 185.27746 * 4 2 1
7 7 C 1.39247 * 120.00236 * 184.14486 * 6 4 2
8 8 C 1.39677 * 119.57319 * 339.00005 * 7 6 4
9 9 C 1.38649 * 119.49359 * 180.02562 * 8 7 6
10 10 C 1.38356 * 118.66996 * 359.75161 * 9 8 7
11 11 C 1.40570 * 119.13093 * 0.48997 * 10 9 8
12 12 C 1.41330 * 119.78588 * 179.77012 * 11 10 9
13 13 H 1.08002 * 120.00281 * 4.85254 * 12 11 10
14 14 C 1.40034 * 119.99971 * 184.84608 * 12 11 10
15 15 N 1.30736 * 119.99963 * 184.84826 * 14 12 11
16 16 Si 1.86796 * 119.99665 * 4.84767 * 14 12 11
17 17 H 1.48503 * 109.46652 * 179.97438 * 16 14 12
18 18 H 1.48495 * 109.47425 * 299.99930 * 16 14 12
19 19 H 1.48496 * 109.47329 * 60.00425 * 16 14 12
20 20 N 1.31908 * 119.57571 * 159.02105 * 7 6 4
21 21 H 1.08999 * 109.46524 * 270.00397 * 1 2 3
22 22 H 1.09002 * 109.46972 * 30.00232 * 1 2 3
23 23 H 1.09001 * 109.46951 * 150.00141 * 1 2 3
24 24 H 1.08999 * 109.46575 * 185.30402 * 3 2 1
25 25 H 1.09005 * 109.47309 * 305.29640 * 3 2 1
26 26 H 1.08997 * 109.47283 * 65.29977 * 3 2 1
27 27 H 0.97009 * 119.99876 * 4.14400 * 6 4 2
28 28 H 1.07997 * 120.25605 * 359.97438 * 8 7 6
29 29 H 1.08004 * 120.66598 * 179.97438 * 9 8 7
30 30 H 1.08003 * 120.43174 * 180.24460 * 10 9 8
31 31 H 0.97009 * 120.00144 * 354.99425 * 15 14 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4651 0.0000 0.0000
3 6 2.1975 1.2688 0.0000
4 6 2.1389 -1.1672 -0.0005
5 8 1.5350 -2.2178 -0.0978
6 7 3.4824 -1.1697 0.1068
7 6 4.1856 -2.3684 0.0197
8 6 3.5244 -3.5747 0.2621
9 6 4.2264 -4.7672 0.1754
10 6 5.5689 -4.7246 -0.1563
11 6 6.1784 -3.4785 -0.3835
12 6 7.5502 -3.4186 -0.7183
13 1 8.1080 -4.3299 -0.8758
14 6 8.1862 -2.1776 -0.8460
15 7 9.4289 -2.1181 -1.2478
16 14 7.2589 -0.6070 -0.4424
17 1 8.1489 0.5622 -0.6569
18 1 6.0700 -0.4934 -1.3248
19 1 6.8210 -0.6414 0.9761
20 7 5.4676 -2.3501 -0.2904
21 1 -0.3632 0.0001 1.0277
22 1 -0.3633 0.8900 -0.5139
23 1 -0.3633 -0.8900 -0.5138
24 1 3.2653 1.0717 -0.0950
25 1 1.8649 1.8804 -0.8388
26 1 2.0073 1.7981 0.9336
27 1 3.9595 -0.3364 0.2448
28 1 2.4747 -3.5784 0.5160
29 1 3.7341 -5.7108 0.3594
30 1 6.1420 -5.6366 -0.2356
31 1 9.9330 -2.9350 -1.3876
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001665790918.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:21:12
Heat of formation + Delta-G solvation = 16.103132 kcal
Electronic energy + Delta-G solvation = -16463.769348 eV
Core-core repulsion = 13745.754899 eV
Total energy + Delta-G solvation = -2718.014449 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 235.106 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-40.44585 -38.38162 -35.56154 -34.63503 -33.44800 -31.08165 -29.62851 -27.96968
-26.08183 -25.15462 -22.08844 -21.59221 -19.59971 -18.53224 -17.99654 -16.80915
-15.92919 -15.40928 -14.94646 -14.58805 -14.05644 -13.79873 -13.47602 -12.91125
-12.75701 -12.61744 -12.58101 -12.21655 -12.07044 -11.82036 -11.13353 -10.83266
-10.32230 -9.99795 -9.66153 -9.29559 -9.15188 -8.73233 -8.51911 -7.73100
-7.41802 -7.19574 -4.75278 2.40967 2.66246 2.69663 3.40593 3.50835
3.64863 3.89267 4.01399 4.39442 4.65795 4.94679 5.14106 5.20559
5.50226 5.51451 5.55539 5.73693 5.88031 6.10897 6.28058 6.47799
6.56661 6.72714 6.83338 7.19028 7.32789 7.46069 7.65330 7.78081
7.88275 8.19044 8.35310 8.65099 8.74904 9.43228 10.01348
Molecular weight = 235.11amu
Principal moments of inertia in cm(-1)
A = 0.029305 B = 0.009033 C = 0.006997
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 955.250214 B = 3099.018780 C = 4000.600389
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.105 3.895
2 N -0.639 5.639
3 C 0.076 3.924
4 C 0.710 3.290
5 O -0.562 6.562
6 N -0.667 5.667
7 C 0.400 3.600
8 C -0.312 4.312
9 C -0.035 4.035
10 C -0.279 4.279
11 C 0.274 3.726
12 C -0.478 4.478
13 H 0.083 0.917
14 C 0.043 3.957
15 N -0.808 5.808
16 Si 1.153 2.847
17 H -0.333 1.333
18 H -0.280 1.280
19 H -0.295 1.295
20 N -0.601 5.601
21 H 0.051 0.949
22 H 0.068 0.932
23 H 0.079 0.921
24 H 0.073 0.927
25 H 0.067 0.933
26 H 0.062 0.938
27 H 0.402 0.598
28 H 0.148 0.852
29 H 0.106 0.894
30 H 0.105 0.895
31 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.134 7.053 2.776 14.307
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.038 4.038
2 N -0.378 5.378
3 C -0.067 4.067
4 C 0.411 3.589
5 O -0.438 6.438
6 N -0.316 5.316
7 C 0.169 3.831
8 C -0.337 4.337
9 C -0.059 4.059
10 C -0.302 4.302
11 C 0.150 3.850
12 C -0.510 4.510
13 H 0.101 0.899
14 C -0.178 4.178
15 N -0.430 5.430
16 Si 0.989 3.011
17 H -0.266 1.266
18 H -0.208 1.208
19 H -0.223 1.223
20 N -0.327 5.327
21 H 0.069 0.931
22 H 0.086 0.914
23 H 0.097 0.903
24 H 0.091 0.909
25 H 0.086 0.914
26 H 0.081 0.919
27 H 0.240 0.760
28 H 0.165 0.835
29 H 0.124 0.876
30 H 0.123 0.877
31 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -11.964 8.617 2.494 14.953
hybrid contribution -0.033 -2.162 0.116 2.165
sum -11.997 6.455 2.610 13.871
Atomic orbital electron populations
1.21483 0.77638 1.03122 1.01574 1.46934 1.07139 1.04704 1.79022
1.21803 0.97080 0.85643 1.02191 1.15666 0.81299 0.83949 0.77958
1.90791 1.67653 1.29031 1.56374 1.42533 1.05302 1.09827 1.73919
1.17845 0.88673 0.83814 0.92755 1.21775 1.02726 0.90767 1.18443
1.20962 0.93679 0.96745 0.94542 1.21597 0.95465 0.97854 1.15254
1.18258 0.92861 0.86043 0.87822 1.20708 0.93100 0.96212 1.40975
0.89864 1.27748 0.95546 1.05336 0.89124 1.70643 1.09577 1.34039
1.28705 0.81870 0.71741 0.69842 0.77636 1.26634 1.20831 1.22325
1.65941 1.06555 1.31078 1.29105 0.93060 0.91367 0.90261 0.90868
0.91436 0.91926 0.76036 0.83485 0.87601 0.87707 0.90600
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.10 1.09 10.52 59.85 0.63 1.72 16
2 N -0.64 -8.53 3.27 -195.34 -0.64 -9.17 16
3 C 0.08 0.74 10.61 59.85 0.63 1.38 16
4 C 0.71 12.95 8.17 -86.93 -0.71 12.24 16
5 O -0.56 -11.85 12.55 5.30 0.07 -11.78 16
6 N -0.67 -13.16 5.28 -15.79 -0.08 -13.25 16
7 C 0.40 9.54 7.51 -154.99 -1.16 8.38 16
8 C -0.31 -7.32 8.90 -38.89 -0.35 -7.66 16
9 C -0.03 -0.79 10.15 -39.39 -0.40 -1.19 16
10 C -0.28 -6.82 9.83 -38.66 -0.38 -7.20 16
11 C 0.27 7.36 6.40 -85.00 -0.54 6.81 16
12 C -0.48 -13.21 9.57 -37.73 -0.36 -13.57 16
13 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16
14 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16
15 N -0.81 -22.15 13.65 55.55 0.76 -21.39 16
16 Si 1.15 27.94 25.62 -169.99 -4.35 23.58 16
17 H -0.33 -7.92 7.11 56.52 0.40 -7.51 16
18 H -0.28 -6.70 6.60 56.52 0.37 -6.33 16
19 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
20 N -0.60 -15.59 4.54 -10.26 -0.05 -15.63 16
21 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16
22 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16
23 H 0.08 0.94 7.35 -51.93 -0.38 0.56 16
24 H 0.07 0.77 5.60 -51.93 -0.29 0.48 16
25 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16
26 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
27 H 0.40 6.99 6.32 -40.82 -0.26 6.73 16
28 H 0.15 3.41 5.16 -52.96 -0.27 3.14 16
29 H 0.11 2.03 8.06 -52.48 -0.42 1.61 16
30 H 0.10 2.38 8.06 -52.48 -0.42 1.95 16
31 H 0.28 7.43 8.72 -40.82 -0.36 7.07 16
LS Contribution 262.71 15.07 3.96 3.96
Total: -1.00 -32.04 262.71 -6.42 -38.46
By element:
Atomic # 1 Polarization: 6.56 SS G_CDS: -3.34 Total: 3.22 kcal
Atomic # 6 Polarization: 4.74 SS G_CDS: -2.74 Total: 2.00 kcal
Atomic # 7 Polarization: -59.43 SS G_CDS: -0.01 Total: -59.44 kcal
Atomic # 8 Polarization: -11.85 SS G_CDS: 0.07 Total: -11.78 kcal
Atomic # 14 Polarization: 27.94 SS G_CDS: -4.35 Total: 23.58 kcal
Total LS contribution 3.96 Total: 3.96 kcal
Total: -32.04 -6.42 -38.46 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001665790918.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.564 kcal
(2) G-P(sol) polarization free energy of solvation -32.045 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.519 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.416 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.461 kcal
(6) G-S(sol) free energy of system = (1) + (5) 16.103 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.25 seconds