Wall clock time and date at job start Sun Mar 29 2020 22:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.46500 * 119.99699 * 2 1 4 4 C 1.34772 * 119.99876 * 180.02562 * 2 1 3 5 5 O 1.21571 * 120.00310 * 5.27745 * 4 2 1 6 6 N 1.34773 * 119.99934 * 185.27746 * 4 2 1 7 7 C 1.39247 * 120.00236 * 184.14486 * 6 4 2 8 8 C 1.39677 * 119.57319 * 339.00005 * 7 6 4 9 9 C 1.38649 * 119.49359 * 180.02562 * 8 7 6 10 10 C 1.38356 * 118.66996 * 359.75161 * 9 8 7 11 11 C 1.40570 * 119.13093 * 0.48997 * 10 9 8 12 12 C 1.41330 * 119.78588 * 179.77012 * 11 10 9 13 13 H 1.08002 * 120.00281 * 4.85254 * 12 11 10 14 14 C 1.40034 * 119.99971 * 184.84608 * 12 11 10 15 15 N 1.30736 * 119.99963 * 184.84826 * 14 12 11 16 16 Si 1.86796 * 119.99665 * 4.84767 * 14 12 11 17 17 H 1.48503 * 109.46652 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47425 * 299.99930 * 16 14 12 19 19 H 1.48496 * 109.47329 * 60.00425 * 16 14 12 20 20 N 1.31908 * 119.57571 * 159.02105 * 7 6 4 21 21 H 1.08999 * 109.46524 * 270.00397 * 1 2 3 22 22 H 1.09002 * 109.46972 * 30.00232 * 1 2 3 23 23 H 1.09001 * 109.46951 * 150.00141 * 1 2 3 24 24 H 1.08999 * 109.46575 * 185.30402 * 3 2 1 25 25 H 1.09005 * 109.47309 * 305.29640 * 3 2 1 26 26 H 1.08997 * 109.47283 * 65.29977 * 3 2 1 27 27 H 0.97009 * 119.99876 * 4.14400 * 6 4 2 28 28 H 1.07997 * 120.25605 * 359.97438 * 8 7 6 29 29 H 1.08004 * 120.66598 * 179.97438 * 9 8 7 30 30 H 1.08003 * 120.43174 * 180.24460 * 10 9 8 31 31 H 0.97009 * 120.00144 * 354.99425 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5350 -2.2178 -0.0978 6 7 3.4824 -1.1697 0.1068 7 6 4.1856 -2.3684 0.0197 8 6 3.5244 -3.5747 0.2621 9 6 4.2264 -4.7672 0.1754 10 6 5.5689 -4.7246 -0.1563 11 6 6.1784 -3.4785 -0.3835 12 6 7.5502 -3.4186 -0.7183 13 1 8.1080 -4.3299 -0.8758 14 6 8.1862 -2.1776 -0.8460 15 7 9.4289 -2.1181 -1.2478 16 14 7.2589 -0.6070 -0.4424 17 1 8.1489 0.5622 -0.6569 18 1 6.0700 -0.4934 -1.3248 19 1 6.8210 -0.6414 0.9761 20 7 5.4676 -2.3501 -0.2904 21 1 -0.3632 0.0001 1.0277 22 1 -0.3633 0.8900 -0.5139 23 1 -0.3633 -0.8900 -0.5138 24 1 3.2653 1.0717 -0.0950 25 1 1.8649 1.8804 -0.8388 26 1 2.0073 1.7981 0.9336 27 1 3.9595 -0.3364 0.2448 28 1 2.4747 -3.5784 0.5160 29 1 3.7341 -5.7108 0.3594 30 1 6.1420 -5.6366 -0.2356 31 1 9.9330 -2.9350 -1.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001665790918.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:12 Heat of formation + Delta-G solvation = -4.810945 kcal Electronic energy + Delta-G solvation = -16464.676251 eV Core-core repulsion = 13745.754899 eV Total energy + Delta-G solvation = -2718.921352 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 235.106 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.92854 -40.13881 -36.78206 -36.31869 -35.33684 -32.98739 -31.41034 -28.86045 -27.52595 -26.79002 -23.82627 -23.37107 -21.18821 -20.28356 -19.54758 -18.33483 -17.20437 -17.01574 -16.72583 -16.13128 -15.70058 -15.22844 -14.92348 -14.73951 -14.33671 -14.20921 -13.78517 -13.47795 -13.35587 -12.99670 -12.74587 -12.71294 -12.20754 -11.74998 -11.65731 -11.15233 -10.86703 -10.41125 -9.83180 -9.70372 -9.31332 -9.12829 -6.81693 0.58792 0.74632 1.37619 1.55310 1.69044 1.97236 2.04334 2.46624 2.67495 2.72787 3.54972 4.05688 4.12986 4.32474 4.42639 4.54297 4.65124 4.70122 4.76953 4.81810 4.84987 4.97466 5.29712 5.36220 5.43883 5.48876 5.59703 5.81719 5.89427 6.00133 6.41241 6.55733 6.72456 7.32142 7.49920 7.94888 Molecular weight = 235.11amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.009033 C = 0.006997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.250214 B = 3099.018780 C = 4000.600389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.629 5.629 3 C 0.068 3.932 4 C 0.702 3.298 5 O -0.596 6.596 6 N -0.665 5.665 7 C 0.390 3.610 8 C -0.311 4.311 9 C -0.027 4.027 10 C -0.294 4.294 11 C 0.258 3.742 12 C -0.508 4.508 13 H 0.069 0.931 14 C 0.014 3.986 15 N -0.829 5.829 16 Si 1.186 2.814 17 H -0.327 1.327 18 H -0.277 1.277 19 H -0.292 1.292 20 N -0.613 5.613 21 H 0.064 0.936 22 H 0.105 0.895 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.412 0.588 28 H 0.155 0.845 29 H 0.144 0.856 30 H 0.116 0.884 31 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.471 8.514 3.321 17.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.367 5.367 3 C -0.074 4.074 4 C 0.404 3.596 5 O -0.476 6.476 6 N -0.316 5.316 7 C 0.158 3.842 8 C -0.335 4.335 9 C -0.051 4.051 10 C -0.316 4.316 11 C 0.133 3.867 12 C -0.541 4.541 13 H 0.087 0.913 14 C -0.203 4.203 15 N -0.452 5.452 16 Si 1.018 2.982 17 H -0.260 1.260 18 H -0.205 1.205 19 H -0.220 1.220 20 N -0.339 5.339 21 H 0.083 0.917 22 H 0.124 0.876 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.252 0.748 28 H 0.172 0.828 29 H 0.162 0.838 30 H 0.134 0.866 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.332 10.134 3.043 17.815 hybrid contribution 0.460 -2.619 -0.015 2.659 sum -13.872 7.516 3.028 16.065 Atomic orbital electron populations 1.21736 0.75664 1.04036 1.02767 1.47105 1.08316 1.04282 1.76976 1.22112 0.96180 0.84224 1.04892 1.15897 0.80670 0.85087 0.77960 1.90742 1.68006 1.30813 1.57992 1.42508 1.05990 1.09025 1.74055 1.18163 0.88288 0.85649 0.92054 1.22107 1.03108 0.91105 1.17205 1.21366 0.92887 0.98237 0.92642 1.21771 0.96534 0.97514 1.15804 1.18453 0.92848 0.87425 0.88005 1.20713 0.93981 0.95984 1.43426 0.91315 1.28589 0.95820 1.07135 0.88742 1.70667 1.10007 1.33935 1.30600 0.81470 0.71113 0.68042 0.77558 1.26004 1.20489 1.22007 1.65951 1.07531 1.30971 1.29460 0.91727 0.87617 0.92172 0.91912 0.88789 0.89151 0.74807 0.82804 0.83801 0.86636 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.73 10.52 127.77 1.34 3.07 16 2 N -0.63 -14.82 3.27 -890.19 -2.91 -17.74 16 3 C 0.07 1.05 10.61 127.77 1.35 2.41 16 4 C 0.70 24.22 8.17 179.06 1.46 25.68 16 5 O -0.60 -24.24 12.55 -3.94 -0.05 -24.29 16 6 N -0.67 -25.10 5.28 -322.14 -1.70 -26.80 16 7 C 0.39 18.11 7.51 133.26 1.00 19.11 16 8 C -0.31 -14.03 8.90 22.72 0.20 -13.83 16 9 C -0.03 -1.17 10.15 22.40 0.23 -0.94 16 10 C -0.29 -14.15 9.83 22.87 0.22 -13.92 16 11 C 0.26 13.87 6.40 40.19 0.26 14.12 16 12 C -0.51 -28.78 9.57 23.47 0.22 -28.56 16 13 H 0.07 3.94 8.05 -2.91 -0.02 3.92 16 14 C 0.01 0.75 5.52 85.29 0.47 1.22 16 15 N -0.83 -46.40 13.65 21.84 0.30 -46.10 16 16 Si 1.19 56.45 25.62 68.60 1.76 58.21 16 17 H -0.33 -15.05 7.11 99.48 0.71 -14.34 16 18 H -0.28 -12.90 6.60 99.48 0.66 -12.24 16 19 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 20 N -0.61 -31.39 4.54 -186.38 -0.85 -32.23 16 21 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.11 1.06 8.07 -2.39 -0.02 1.04 16 23 H 0.06 1.30 7.35 -2.39 -0.02 1.29 16 24 H 0.06 1.13 5.60 -2.39 -0.01 1.11 16 25 H 0.09 1.02 8.14 -2.38 -0.02 1.00 16 26 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.41 13.52 6.32 -92.70 -0.59 12.93 16 28 H 0.15 6.85 5.16 -10.39 -0.05 6.79 16 29 H 0.14 5.04 8.06 -2.91 -0.02 5.01 16 30 H 0.12 5.19 8.06 -2.91 -0.02 5.17 16 31 H 0.28 15.22 8.72 -92.70 -0.81 14.42 16 Total: -1.00 -69.20 262.71 3.76 -65.44 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.44 Total: 15.13 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 6.77 Total: 8.37 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -5.16 Total: -122.86 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.05 Total: -24.29 kcal Atomic # 14 Polarization: 56.45 SS G_CDS: 1.76 Total: 58.21 kcal Total: -69.20 3.76 -65.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001665790918.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.632 kcal (2) G-P(sol) polarization free energy of solvation -69.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds