Wall clock time and date at job start Sun Mar 29 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 C 1.50708 * 109.46447 * 240.00041 * 2 1 3 5 5 H 1.08001 * 119.99795 * 239.99650 * 4 2 1 6 6 C 1.37876 * 119.99756 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47055 * 119.99859 * 8 6 4 11 11 H 1.48498 * 109.47283 * 239.99935 * 8 6 4 12 12 C 1.52996 * 109.47300 * 120.00763 * 2 1 3 13 13 N 1.46499 * 109.47023 * 299.99224 * 12 2 1 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 2 15 15 O 1.21613 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.43207 * 119.99984 * 180.27897 * 14 13 12 17 17 C 5.86714 * 84.81838 * 82.81565 * 2 1 3 18 18 C 7.21533 * 81.82936 * 78.52299 * 2 1 3 19 19 C 1.52996 * 117.49849 * 67.80466 * 18 17 16 20 20 C 1.52999 * 117.50110 * 359.14272 * 18 17 16 21 21 H 1.09007 * 109.46839 * 299.99490 * 1 2 3 22 22 H 1.08994 * 109.47604 * 59.99587 * 1 2 3 23 23 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47169 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47449 * 300.00090 * 3 2 1 26 26 H 1.08998 * 109.47377 * 60.00525 * 3 2 1 27 27 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47328 * 179.97438 * 12 2 1 29 29 H 1.08997 * 109.47540 * 59.99306 * 12 2 1 30 30 H 0.97000 * 120.00069 * 0.02562 * 13 12 2 31 31 H 1.09006 * 115.54513 * 213.47418 * 18 17 16 32 32 H 1.08998 * 117.49944 * 0.02562 * 19 18 17 33 33 H 1.09008 * 117.49634 * 145.01839 * 19 18 17 34 34 H 1.08994 * 117.49923 * 214.98032 * 20 18 17 35 35 H 1.09000 * 117.49171 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3221 -1.1195 -4.0081 9 1 3.1469 -2.2864 -3.6040 10 1 1.1672 -1.5865 -4.8166 11 1 3.1469 -0.1858 -4.8162 12 6 2.0400 -0.7214 1.2491 13 7 1.5519 -0.0308 2.4453 14 6 1.8771 -0.4917 3.6694 15 8 2.5762 -1.4805 3.7809 16 6 1.3949 0.1799 4.8387 17 6 1.0001 0.7308 5.7973 18 6 0.5046 1.4211 6.9993 19 6 0.0849 2.8848 6.8507 20 6 1.3787 2.5303 7.5879 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.7080 1.1610 -3.4843 28 1 3.1300 -0.7218 1.2489 29 1 1.6767 -1.7490 1.2491 30 1 0.9940 0.7577 2.3565 31 1 -0.0618 0.8033 7.6963 32 1 0.1753 3.3366 5.8629 33 1 -0.7575 3.2302 7.4503 34 1 1.3871 2.6425 8.6720 35 1 2.3210 2.7485 7.0852 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837892567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:31 Heat of formation + Delta-G solvation = 29.392915 kcal Electronic energy + Delta-G solvation = -15842.717039 eV Core-core repulsion = 13228.819221 eV Total energy + Delta-G solvation = -2613.897818 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27064 -37.77935 -36.38572 -33.39695 -32.57660 -30.80527 -26.21538 -25.74403 -25.28442 -23.93815 -22.72318 -21.54588 -18.97144 -18.39754 -16.74870 -15.91178 -15.44438 -15.16177 -14.82165 -14.69022 -13.64216 -12.97918 -12.93881 -12.76058 -12.23408 -12.15972 -11.84141 -11.49308 -11.35316 -11.22118 -10.89556 -10.68020 -10.41898 -10.28160 -10.18487 -10.00647 -9.74350 -9.66045 -9.35174 -8.80492 -8.52123 -8.36104 -6.03482 -4.13674 1.72280 2.25912 3.26928 3.34963 3.36775 3.42050 3.57896 3.87998 4.28022 4.41396 4.49919 4.67471 4.91567 5.23496 5.30274 5.38630 5.59720 5.75714 5.77290 6.19265 6.28407 6.48125 6.71171 6.81145 6.89803 6.94403 6.99583 7.27873 7.33130 7.53624 7.68059 7.94448 7.98817 8.12089 8.35639 8.55167 8.87093 9.52343 10.98066 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.045587 B = 0.004580 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.066296 B = 6112.135738 C = 6466.484502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.055 3.945 3 C -0.132 4.132 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.130 3.870 13 N -0.701 5.701 14 C 0.619 3.381 15 O -0.536 6.536 16 C -0.199 4.199 17 C -0.078 4.078 18 C -0.060 4.060 19 C -0.161 4.161 20 C -0.162 4.162 21 H 0.006 0.994 22 H 0.086 0.914 23 H 0.028 0.972 24 H 0.028 0.972 25 H 0.086 0.914 26 H 0.006 0.994 27 H 0.259 0.741 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.402 0.598 31 H 0.133 0.867 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.737 5.210 14.592 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.054 3.946 3 C -0.189 4.189 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.008 3.992 13 N -0.350 5.350 14 C 0.404 3.596 15 O -0.415 6.415 16 C -0.202 4.202 17 C -0.080 4.080 18 C -0.077 4.077 19 C -0.198 4.198 20 C -0.199 4.199 21 H 0.025 0.975 22 H 0.105 0.895 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.105 0.895 26 H 0.025 0.975 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.237 0.763 31 H 0.151 0.849 32 H 0.120 0.880 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.305 4.604 14.454 15.343 hybrid contribution 0.016 -0.131 -0.879 0.889 sum -2.289 4.473 13.575 14.475 Atomic orbital electron populations 1.21842 0.97657 0.99293 1.00156 1.18387 0.92917 0.92837 0.90452 1.21840 0.98670 0.98285 1.00148 1.21014 1.31488 1.12132 0.89780 0.92264 1.24882 0.94835 0.94917 0.98884 1.69811 1.36670 1.22786 1.23159 0.86503 0.78642 0.79749 0.82920 1.19723 1.21057 1.21055 1.21854 0.98487 0.95985 0.82844 1.46230 1.51817 1.31632 1.05341 1.14796 0.80535 0.83201 0.81030 1.90825 1.38274 1.25762 1.86640 1.21036 1.02560 1.00108 0.96476 1.21256 0.95787 0.96427 0.94566 1.18834 1.04799 0.90552 0.93566 1.23126 0.98851 0.94849 1.03006 1.23106 0.95808 1.00291 1.00679 0.97494 0.89496 0.95320 0.95327 0.89500 0.97502 0.93039 0.92195 0.92187 0.76253 0.84906 0.87962 0.87497 0.87530 0.88103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.08 37.16 0.30 -2.68 16 2 C 0.05 1.27 0.50 -155.66 -0.08 1.19 16 3 C -0.13 -2.97 8.08 37.15 0.30 -2.67 16 4 C -0.51 -13.20 8.01 -34.44 -0.28 -13.47 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 7 N -0.89 -23.50 9.35 55.43 0.52 -22.99 16 8 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 12 C 0.13 2.80 4.50 -4.04 -0.02 2.78 16 13 N -0.70 -13.19 4.95 -62.77 -0.31 -13.50 16 14 C 0.62 11.98 7.65 -14.33 -0.11 11.87 16 15 O -0.54 -12.14 17.09 5.27 0.09 -12.05 16 16 C -0.20 -3.29 13.61 -38.83 -0.53 -3.82 16 17 C -0.08 -1.07 13.47 -37.12 -0.50 -1.57 16 18 C -0.06 -0.56 6.21 -93.41 -0.58 -1.14 16 19 C -0.16 -1.21 10.21 -26.69 -0.27 -1.49 16 20 C -0.16 -1.22 10.21 -26.69 -0.27 -1.50 16 21 H 0.01 0.12 6.86 -51.93 -0.36 -0.23 16 22 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 23 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.09 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.01 0.12 6.86 -51.93 -0.36 -0.24 16 27 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 28 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.40 6.90 6.13 -40.82 -0.25 6.65 16 31 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 299.26 15.07 4.51 4.51 Total: -1.00 -28.93 299.26 -7.28 -36.21 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.94 Total: 3.05 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.13 Total: -10.86 kcal Atomic # 7 Polarization: -36.70 SS G_CDS: 0.21 Total: -36.49 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.05 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -28.93 -7.28 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.604 kcal (2) G-P(sol) polarization free energy of solvation -28.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds