Wall clock time and date at job start Sun Mar 29 2020 22:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 C 1.50708 * 109.46447 * 240.00041 * 2 1 3 5 5 H 1.08001 * 119.99795 * 239.99650 * 4 2 1 6 6 C 1.37876 * 119.99756 * 60.00387 * 4 2 1 7 7 N 1.31514 * 120.00351 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99771 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47191 * 0.02562 * 8 6 4 10 10 H 1.48508 * 109.47055 * 119.99859 * 8 6 4 11 11 H 1.48498 * 109.47283 * 239.99935 * 8 6 4 12 12 C 1.52996 * 109.47300 * 120.00763 * 2 1 3 13 13 N 1.46499 * 109.47023 * 299.99224 * 12 2 1 14 14 C 1.34777 * 120.00195 * 179.97438 * 13 12 2 15 15 O 1.21613 * 119.99966 * 0.02562 * 14 13 12 16 16 C 1.43207 * 119.99984 * 180.27897 * 14 13 12 17 17 C 5.86714 * 84.81838 * 82.81565 * 2 1 3 18 18 C 7.21533 * 81.82936 * 78.52299 * 2 1 3 19 19 C 1.52996 * 117.49849 * 67.80466 * 18 17 16 20 20 C 1.52999 * 117.50110 * 359.14272 * 18 17 16 21 21 H 1.09007 * 109.46839 * 299.99490 * 1 2 3 22 22 H 1.08994 * 109.47604 * 59.99587 * 1 2 3 23 23 H 1.08997 * 109.47391 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.47169 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47449 * 300.00090 * 3 2 1 26 26 H 1.08998 * 109.47377 * 60.00525 * 3 2 1 27 27 H 0.96996 * 120.00389 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.47328 * 179.97438 * 12 2 1 29 29 H 1.08997 * 109.47540 * 59.99306 * 12 2 1 30 30 H 0.97000 * 120.00069 * 0.02562 * 13 12 2 31 31 H 1.09006 * 115.54513 * 213.47418 * 18 17 16 32 32 H 1.08998 * 117.49944 * 0.02562 * 19 18 17 33 33 H 1.09008 * 117.49634 * 145.01839 * 19 18 17 34 34 H 1.08994 * 117.49923 * 214.98032 * 20 18 17 35 35 H 1.09000 * 117.49171 * 359.97438 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0322 -0.7105 -1.2306 5 1 2.6531 -1.5886 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3221 -1.1195 -4.0081 9 1 3.1469 -2.2864 -3.6040 10 1 1.1672 -1.5865 -4.8166 11 1 3.1469 -0.1858 -4.8162 12 6 2.0400 -0.7214 1.2491 13 7 1.5519 -0.0308 2.4453 14 6 1.8771 -0.4917 3.6694 15 8 2.5762 -1.4805 3.7809 16 6 1.3949 0.1799 4.8387 17 6 1.0001 0.7308 5.7973 18 6 0.5046 1.4211 6.9993 19 6 0.0849 2.8848 6.8507 20 6 1.3787 2.5303 7.5879 21 1 -0.3633 0.5138 0.8901 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 3.1301 1.4424 -0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6768 1.9563 0.8900 27 1 0.7080 1.1610 -3.4843 28 1 3.1300 -0.7218 1.2489 29 1 1.6767 -1.7490 1.2491 30 1 0.9940 0.7577 2.3565 31 1 -0.0618 0.8033 7.6963 32 1 0.1753 3.3366 5.8629 33 1 -0.7575 3.2302 7.4503 34 1 1.3871 2.6425 8.6720 35 1 2.3210 2.7485 7.0852 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837892567.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:30 Heat of formation + Delta-G solvation = 13.018358 kcal Electronic energy + Delta-G solvation = -15843.427093 eV Core-core repulsion = 13228.819221 eV Total energy + Delta-G solvation = -2614.607872 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.131 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.85889 -38.50116 -38.17293 -35.13274 -33.83587 -32.62426 -27.83777 -27.59622 -27.19357 -25.15241 -23.27324 -22.83664 -20.71828 -19.94063 -17.90885 -17.52544 -17.03179 -16.61756 -16.48157 -15.84666 -15.23583 -14.82709 -14.67918 -14.06695 -13.51829 -13.26578 -13.16785 -13.06984 -12.72875 -12.58470 -12.39992 -12.34158 -12.26282 -12.14285 -11.60368 -11.52275 -11.22196 -11.09230 -10.72631 -10.71024 -10.41858 -10.10267 -8.03171 -6.19109 0.43280 1.12558 1.42181 1.46394 1.55905 2.06168 2.36942 2.46801 3.02150 3.17993 3.20765 3.84492 4.02423 4.05306 4.34469 4.45935 4.49971 4.67782 4.79338 4.93040 4.98715 5.02085 5.07553 5.11412 5.15953 5.23992 5.24169 5.48345 5.63946 5.66727 6.11248 6.12634 6.17704 6.40467 6.44024 6.84376 7.03888 7.48801 8.96288 Molecular weight = 235.13amu Principal moments of inertia in cm(-1) A = 0.045587 B = 0.004580 C = 0.004329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.066296 B = 6112.135738 C = 6466.484502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.047 0.953 6 C 0.028 3.972 7 N -0.899 5.899 8 Si 0.947 3.053 9 H -0.275 1.275 10 H -0.281 1.281 11 H -0.281 1.281 12 C 0.144 3.856 13 N -0.692 5.692 14 C 0.625 3.375 15 O -0.578 6.578 16 C -0.265 4.265 17 C -0.025 4.025 18 C -0.088 4.088 19 C -0.149 4.149 20 C -0.152 4.152 21 H 0.033 0.967 22 H 0.065 0.935 23 H 0.020 0.980 24 H 0.021 0.979 25 H 0.065 0.935 26 H 0.033 0.967 27 H 0.261 0.739 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.411 0.589 31 H 0.160 0.840 32 H 0.093 0.907 33 H 0.135 0.865 34 H 0.135 0.865 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.582 6.464 16.465 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.066 0.934 6 C -0.171 4.171 7 N -0.538 5.538 8 Si 0.774 3.226 9 H -0.199 1.199 10 H -0.207 1.207 11 H -0.207 1.207 12 C 0.021 3.979 13 N -0.342 5.342 14 C 0.413 3.587 15 O -0.460 6.460 16 C -0.268 4.268 17 C -0.027 4.027 18 C -0.105 4.105 19 C -0.186 4.186 20 C -0.188 4.188 21 H 0.052 0.948 22 H 0.083 0.917 23 H 0.040 0.960 24 H 0.040 0.960 25 H 0.083 0.917 26 H 0.052 0.948 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.249 0.751 31 H 0.177 0.823 32 H 0.111 0.889 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.166 5.886 16.330 17.645 hybrid contribution 0.244 -0.447 -1.349 1.442 sum -2.922 5.439 14.981 16.203 Atomic orbital electron populations 1.21687 0.97059 0.98857 1.00364 1.18391 0.93357 0.93118 0.90197 1.21686 0.98120 0.97792 1.00363 1.21279 1.31792 1.12242 0.91351 0.93440 1.25461 0.95088 0.95578 1.01016 1.69911 1.36961 1.23327 1.23615 0.85669 0.78110 0.78712 0.80085 1.19936 1.20734 1.20713 1.21477 0.97634 0.95411 0.83346 1.46015 1.51840 1.31696 1.04677 1.14998 0.79497 0.82544 0.81704 1.90785 1.40221 1.27727 1.87309 1.20514 1.06004 1.02872 0.97444 1.22184 0.92615 0.93948 0.93961 1.19330 1.06845 0.91776 0.92591 1.23272 0.99850 0.92386 1.03098 1.23254 0.95322 0.97965 1.02298 0.94770 0.91657 0.96036 0.96029 0.91664 0.94764 0.92986 0.93411 0.93420 0.75136 0.82276 0.88870 0.84690 0.84702 0.89168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.49 8.08 71.98 0.58 -4.90 16 2 C 0.05 2.34 0.50 -52.93 -0.03 2.32 16 3 C -0.12 -5.48 8.08 71.98 0.58 -4.89 16 4 C -0.53 -27.98 8.01 25.60 0.21 -27.78 16 5 H 0.05 2.56 7.74 -2.91 -0.02 2.54 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -47.89 9.35 21.45 0.20 -47.69 16 8 Si 0.95 42.57 29.54 68.60 2.03 44.60 16 9 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 C 0.14 6.31 4.50 86.38 0.39 6.70 16 13 N -0.69 -26.10 4.95 -470.75 -2.33 -28.43 16 14 C 0.62 24.53 7.65 85.49 0.65 25.19 16 15 O -0.58 -26.98 17.09 -4.07 -0.07 -27.05 16 16 C -0.27 -8.67 13.61 30.02 0.41 -8.27 16 17 C -0.02 -0.63 13.47 31.13 0.42 -0.21 16 18 C -0.09 -1.34 6.21 -12.60 -0.08 -1.42 16 19 C -0.15 -1.66 10.21 30.62 0.31 -1.34 16 20 C -0.15 -1.72 10.21 30.62 0.31 -1.40 16 21 H 0.03 1.30 6.86 -2.38 -0.02 1.29 16 22 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 23 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 24 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 25 H 0.06 3.24 6.07 -2.39 -0.01 3.23 16 26 H 0.03 1.30 6.86 -2.39 -0.02 1.29 16 27 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.05 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.41 13.75 6.13 -92.71 -0.57 13.18 16 31 H 0.16 1.67 8.14 -2.38 -0.02 1.65 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.14 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -63.13 299.26 4.55 -58.59 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.52 Total: 14.07 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 4.19 Total: -14.08 kcal Atomic # 7 Polarization: -73.99 SS G_CDS: -2.13 Total: -76.12 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.07 Total: -27.05 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -63.13 4.55 -58.59 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892567.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.607 kcal (2) G-P(sol) polarization free energy of solvation -63.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds