Wall clock time and date at job start Sun Mar 29 2020 22:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 N 1.46895 * 109.46770 * 179.72214 * 9 7 2 11 11 C 1.46910 * 110.99769 * 180.02562 * 10 9 7 12 12 C 1.53004 * 109.46506 * 299.99489 * 11 10 9 13 13 C 1.53003 * 109.46670 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.47532 * 300.00450 * 13 12 11 15 15 C 1.53001 * 109.46992 * 60.00119 * 14 13 12 16 16 C 1.52993 * 109.47325 * 59.99852 * 15 14 13 17 17 C 1.52999 * 109.47207 * 300.00017 * 16 15 14 18 18 C 1.52997 * 109.47255 * 60.00225 * 17 16 15 19 19 C 1.52993 * 109.47162 * 179.97438 * 11 10 9 20 20 C 1.52998 * 109.47046 * 299.99774 * 15 14 13 21 21 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 1.00901 * 111.00085 * 303.94554 * 10 9 7 25 25 H 1.08991 * 109.47451 * 299.99980 * 12 11 10 26 26 H 1.09000 * 109.46973 * 60.00453 * 12 11 10 27 27 H 1.09000 * 109.46830 * 179.97438 * 13 12 11 28 28 H 1.09000 * 109.46830 * 299.99629 * 14 13 12 29 29 H 1.08996 * 109.46704 * 179.97438 * 14 13 12 30 30 H 1.08997 * 109.46509 * 180.02562 * 15 14 13 31 31 H 1.08998 * 109.47106 * 180.02562 * 16 15 14 32 32 H 1.08996 * 109.47228 * 60.00179 * 16 15 14 33 33 H 1.09000 * 109.47283 * 179.97438 * 17 16 15 34 34 H 1.09001 * 109.47285 * 59.99486 * 18 17 16 35 35 H 1.09000 * 109.47446 * 180.02562 * 18 17 16 36 36 H 1.08998 * 109.47106 * 299.99827 * 19 11 10 37 37 H 1.09005 * 109.47463 * 59.99615 * 19 11 10 38 38 H 1.09008 * 109.47448 * 300.00685 * 20 15 14 39 39 H 1.08998 * 109.47293 * 180.02562 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 7 2.2055 -3.6157 -0.0102 11 6 1.5051 -4.9071 -0.0167 12 6 0.6275 -5.0174 1.2318 13 6 -0.1024 -6.3621 1.2248 14 6 -0.9791 -6.4600 -0.0252 15 6 -0.1015 -6.3498 -1.2736 16 6 0.9230 -7.4860 -1.2788 17 6 1.7997 -7.3880 -0.0288 18 6 0.9222 -7.4984 1.2196 19 6 2.5299 -6.0430 -0.0223 20 6 0.6284 -5.0051 -1.2667 21 1 -0.4850 0.8401 -0.0004 22 1 0.6242 -2.5609 0.8844 23 1 0.6244 -2.5529 -0.8956 24 1 2.8404 -3.5453 -0.7913 25 1 1.2521 -4.9472 2.1223 26 1 -0.1026 -4.2081 1.2353 27 1 -0.7272 -6.4408 2.1145 28 1 -1.7090 -5.6505 -0.0214 29 1 -1.4987 -7.4182 -0.0303 30 1 -0.7262 -6.4191 -2.1641 31 1 1.5485 -7.4072 -2.1680 32 1 0.4031 -8.4440 -1.2838 33 1 2.5293 -8.1978 -0.0323 34 1 0.4021 -8.4564 1.2147 35 1 1.5467 -7.4282 2.1102 36 1 3.1548 -5.9642 -0.9118 37 1 3.1549 -5.9731 0.8681 38 1 -0.1015 -4.1954 -1.2629 39 1 1.2533 -4.9263 -2.1563 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003268175.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:41:25 Heat of formation + Delta-G solvation = -49.583806 kcal Electronic energy + Delta-G solvation = -17845.785397 eV Core-core repulsion = 15364.295986 eV Total energy + Delta-G solvation = -2481.489411 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 235.163 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.35273 -37.02602 -34.66477 -33.50600 -33.48580 -31.20947 -27.89311 -26.85410 -26.80086 -24.11299 -22.34529 -22.17125 -21.04378 -18.77819 -18.20145 -16.70098 -16.35901 -15.43360 -15.40247 -15.33107 -15.30991 -14.74086 -14.22946 -14.21944 -13.88236 -13.80326 -13.32700 -13.28374 -13.24170 -12.71219 -12.67483 -12.18284 -11.91225 -11.74137 -11.71373 -11.59028 -11.55065 -11.29489 -10.89127 -10.68169 -10.53552 -10.42471 -8.98375 -8.22915 -6.33999 1.37966 1.41939 1.49935 2.38376 3.09546 3.43511 3.60902 3.65670 4.00200 4.18347 4.25121 4.32709 4.35157 4.36277 4.44686 4.49182 4.50033 4.69653 4.82112 4.86282 4.88610 4.99927 5.10990 5.15459 5.16851 5.17508 5.21319 5.22462 5.30934 5.31669 5.40054 5.51558 5.57614 5.63292 5.64093 5.72169 6.05797 6.52333 6.77070 6.92923 7.36668 8.88131 Molecular weight = 235.16amu Principal moments of inertia in cm(-1) A = 0.044844 B = 0.006504 C = 0.006334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.242039 B = 4303.878227 C = 4419.767650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.540 4.540 8 H 0.061 0.939 9 C 0.214 3.786 10 N -0.685 5.685 11 C 0.115 3.885 12 C -0.097 4.097 13 C -0.083 4.083 14 C -0.106 4.106 15 C -0.081 4.081 16 C -0.100 4.100 17 C -0.080 4.080 18 C -0.101 4.101 19 C -0.093 4.093 20 C -0.137 4.137 21 H 0.264 0.736 22 H 0.000 1.000 23 H -0.037 1.037 24 H 0.329 0.671 25 H 0.052 0.948 26 H 0.026 0.974 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.027 0.973 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.106 -17.460 -0.910 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.578 4.578 8 H 0.079 0.921 9 C 0.086 3.914 10 N -0.313 5.313 11 C 0.024 3.976 12 C -0.135 4.135 13 C -0.102 4.102 14 C -0.143 4.143 15 C -0.100 4.100 16 C -0.138 4.138 17 C -0.099 4.099 18 C -0.138 4.138 19 C -0.131 4.131 20 C -0.176 4.176 21 H 0.073 0.927 22 H 0.018 0.982 23 H -0.020 1.020 24 H 0.146 0.854 25 H 0.071 0.929 26 H 0.044 0.956 27 H 0.092 0.908 28 H 0.057 0.943 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.046 0.954 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.054 -17.320 -0.212 17.353 hybrid contribution -0.324 1.710 -0.911 1.964 sum 0.730 -15.610 -1.123 15.667 Atomic orbital electron populations 1.70099 1.07805 1.27939 1.51589 1.25957 0.95787 1.03349 0.94627 0.85399 0.78138 0.77692 0.79142 1.19102 1.20673 1.19346 1.21607 0.93742 0.91861 1.50591 0.92058 1.19138 0.90709 0.88387 0.93124 1.60764 1.20218 1.01729 1.48608 1.20922 0.93289 0.89748 0.93633 1.21505 0.97598 0.97145 0.97215 1.21092 0.96883 0.93997 0.98249 1.21537 0.96968 1.01765 0.94069 1.21032 0.96857 0.93962 0.98151 1.21524 0.96806 0.97856 0.97583 1.21094 0.97275 0.96278 0.95271 1.21530 0.96815 0.97836 0.97640 1.21498 0.96458 0.93432 1.01716 1.22194 0.99153 0.97830 0.98441 0.92700 0.98209 1.01975 0.85406 0.92901 0.95560 0.90753 0.94314 0.89414 0.91159 0.91859 0.89689 0.88875 0.89648 0.91861 0.92189 0.92024 0.95397 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.26 13.29 21.45 0.28 -57.98 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 45.64 29.54 68.60 2.03 47.66 16 4 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 5 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.54 -32.11 9.32 25.60 0.24 -31.87 16 8 H 0.06 3.54 7.81 -2.91 -0.02 3.52 16 9 C 0.21 11.97 4.65 85.56 0.40 12.37 16 10 N -0.68 -31.12 6.08 -474.15 -2.88 -34.00 16 11 C 0.12 4.22 0.71 3.52 0.00 4.22 16 12 C -0.10 -3.57 4.24 30.60 0.13 -3.44 16 13 C -0.08 -2.26 3.19 -10.79 -0.03 -2.30 16 14 C -0.11 -2.77 5.19 30.59 0.16 -2.61 16 15 C -0.08 -2.17 3.19 -10.80 -0.03 -2.21 16 16 C -0.10 -2.09 5.19 30.59 0.16 -1.93 16 17 C -0.08 -1.73 3.19 -10.78 -0.03 -1.77 16 18 C -0.10 -2.14 5.19 30.60 0.16 -1.98 16 19 C -0.09 -2.67 4.74 30.61 0.14 -2.52 16 20 C -0.14 -4.91 4.23 30.59 0.13 -4.78 16 21 H 0.26 15.47 8.31 -92.70 -0.77 14.70 16 22 H 0.00 -0.01 6.30 -2.38 -0.02 -0.02 16 23 H -0.04 -2.25 6.30 -2.39 -0.02 -2.27 16 24 H 0.33 14.40 8.71 -89.69 -0.78 13.62 16 25 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.03 1.16 6.40 -2.39 -0.02 1.14 16 27 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.03 1.21 6.40 -2.38 -0.02 1.20 16 39 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -66.49 284.82 1.54 -64.95 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.23 Total: 17.67 kcal Atomic # 6 Polarization: -40.18 SS G_CDS: 1.88 Total: -38.30 kcal Atomic # 7 Polarization: -89.38 SS G_CDS: -2.60 Total: -91.98 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.66 kcal Total: -66.49 1.54 -64.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003268175.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.367 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds