Wall clock time and date at job start Sun Mar 29 2020 22:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40298 * 126.09696 * 2 1 4 4 C 1.31068 * 108.26859 * 180.34050 * 3 2 1 5 5 C 1.39287 * 108.08085 * 359.56566 * 4 3 2 6 6 C 1.34325 * 126.08760 * 180.02562 * 2 1 3 7 7 C 1.50823 * 128.04083 * 359.83940 * 6 2 1 8 8 C 1.53355 * 108.38935 * 196.63869 * 7 6 2 9 9 C 1.53102 * 109.51204 * 310.06296 * 8 7 6 10 10 C 1.50846 * 127.89979 * 180.10840 * 5 4 3 11 11 H 1.09000 * 109.68285 * 77.17370 * 10 5 4 12 12 N 1.46903 * 109.67809 * 316.62050 * 10 5 4 13 13 C 1.46897 * 111.00251 * 85.00085 * 12 10 5 14 14 C 1.50701 * 109.47155 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99895 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99735 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99868 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00421 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47120 * 89.99825 * 18 16 14 20 20 H 1.48501 * 109.47397 * 210.00086 * 18 16 14 21 21 H 1.48495 * 109.46885 * 330.00250 * 18 16 14 22 22 H 1.09007 * 109.46966 * 269.99660 * 1 2 3 23 23 H 1.08999 * 109.47400 * 29.99630 * 1 2 3 24 24 H 1.09002 * 109.47628 * 150.00408 * 1 2 3 25 25 H 1.08003 * 125.95448 * 179.73445 * 4 3 2 26 26 H 1.09004 * 109.67832 * 76.91378 * 7 6 2 27 27 H 1.09001 * 109.68563 * 316.36944 * 7 6 2 28 28 H 1.08998 * 109.47184 * 190.05117 * 8 7 6 29 29 H 1.09008 * 109.46311 * 70.07250 * 8 7 6 30 30 H 1.09006 * 109.46393 * 310.25414 * 9 8 7 31 31 H 1.09005 * 109.46548 * 190.27376 * 9 8 7 32 32 H 1.00899 * 110.99421 * 208.95200 * 12 10 5 33 33 H 1.08997 * 109.46652 * 299.99724 * 13 12 10 34 34 H 1.09004 * 109.47071 * 59.99588 * 13 12 10 35 35 H 0.96998 * 120.00638 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5392 0.7324 -0.0074 5 6 3.5454 -0.6605 -0.0023 6 6 2.2561 -1.0855 -0.0005 7 6 1.8437 -2.5362 0.0022 8 6 3.0535 -3.3824 0.4172 9 6 4.2699 -2.9812 -0.4214 10 6 4.7398 -1.5818 -0.0051 11 1 5.1749 -1.6220 0.9935 12 7 5.7406 -1.0914 -0.9622 13 6 6.6061 -0.0773 -0.3457 14 6 7.6179 0.4005 -1.3552 15 1 7.6182 -0.0086 -2.3546 16 6 8.5432 1.3600 -1.0027 17 7 9.4265 1.7766 -1.8835 18 14 8.5423 2.0682 0.7258 19 1 9.4264 1.2516 1.5958 20 1 9.0398 3.4669 0.6880 21 1 7.1599 2.0490 1.2678 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.4106 1.3705 -0.0134 26 1 1.5175 -2.8270 -0.9964 27 1 1.0303 -2.6854 0.7124 28 1 2.8321 -4.4372 0.2544 29 1 3.2688 -3.2152 1.4726 30 1 3.9972 -2.9741 -1.4768 31 1 5.0752 -3.6978 -0.2593 32 1 6.2861 -1.8531 -1.3368 33 1 5.9991 0.7645 -0.0127 34 1 7.1239 -0.5125 0.5092 35 1 10.0777 2.4513 -1.6356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037051867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:34 Heat of formation + Delta-G solvation = 74.762770 kcal Electronic energy + Delta-G solvation = -16726.582344 eV Core-core repulsion = 14146.944662 eV Total energy + Delta-G solvation = -2579.637682 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.19715 -37.00332 -34.66937 -33.04873 -32.08573 -29.43396 -28.93378 -26.48023 -26.09991 -22.69936 -21.70871 -20.86626 -20.40049 -18.41588 -16.79367 -16.37364 -15.63354 -14.83227 -14.56009 -14.24625 -13.85038 -13.73788 -13.48734 -12.94495 -12.79791 -12.67205 -12.40899 -12.22018 -11.93680 -11.36397 -11.21190 -10.82592 -10.75486 -10.60829 -10.20768 -10.03855 -9.70318 -9.18331 -8.91154 -8.55563 -7.88939 -7.39343 -6.01487 -3.98799 2.14980 2.76239 3.25742 3.32023 3.40135 3.42920 4.46075 4.61093 4.63643 4.82376 4.89933 5.10685 5.23901 5.28936 5.32295 5.37901 5.46437 5.50484 5.63696 5.78197 5.83881 5.91985 6.02219 6.14898 6.38304 6.42927 6.62579 6.86399 7.05225 7.15898 7.33165 7.68070 7.97178 8.08896 8.43639 8.70950 9.07561 9.60864 11.11948 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.007104 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.947505 B = 3940.260667 C = 4483.324748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.106 3.894 2 N -0.379 5.379 3 N -0.312 5.312 4 C 0.075 3.925 5 C -0.204 4.204 6 C 0.069 3.931 7 C -0.050 4.050 8 C -0.109 4.109 9 C -0.121 4.121 10 C 0.159 3.841 11 H 0.041 0.959 12 N -0.671 5.671 13 C 0.163 3.837 14 C -0.514 4.514 15 H 0.079 0.921 16 C 0.068 3.932 17 N -0.901 5.901 18 Si 0.875 3.125 19 H -0.278 1.278 20 H -0.286 1.286 21 H -0.265 1.265 22 H 0.068 0.932 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.187 0.813 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.337 0.663 33 H 0.029 0.971 34 H -0.021 1.021 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.012 -9.879 6.044 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 N -0.161 5.161 3 N -0.133 5.133 4 C -0.110 4.110 5 C -0.215 4.215 6 C -0.059 4.059 7 C -0.089 4.089 8 C -0.147 4.147 9 C -0.159 4.159 10 C 0.047 3.953 11 H 0.059 0.941 12 N -0.302 5.302 13 C 0.035 3.965 14 C -0.552 4.552 15 H 0.097 0.903 16 C -0.133 4.133 17 N -0.540 5.540 18 Si 0.702 3.298 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.190 1.190 22 H 0.086 0.914 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.204 0.796 26 H 0.098 0.902 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.155 0.845 33 H 0.047 0.953 34 H -0.004 1.004 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.222 -8.252 5.739 20.810 hybrid contribution 1.177 -0.556 1.408 1.918 sum -17.044 -8.808 7.148 20.474 Atomic orbital electron populations 1.21696 0.75288 1.03952 1.02663 1.48113 1.05928 1.03751 1.58319 1.77526 1.01807 1.07117 1.26877 1.23889 0.94702 0.95177 0.97185 1.19889 0.93337 0.93978 1.14339 1.20760 0.91119 0.90292 1.03707 1.20262 0.98652 0.87859 1.02094 1.21497 0.94148 0.98597 1.00494 1.21785 0.97279 0.96094 1.00731 1.19835 0.90384 0.90481 0.94576 0.94139 1.60443 1.18494 1.16328 1.34935 1.20135 0.91370 0.91031 0.93956 1.21078 1.12467 1.22276 0.99361 0.90297 1.24897 0.95198 0.96245 0.96961 1.69897 1.18799 1.30963 1.34367 0.86868 0.78866 0.78638 0.85440 1.20384 1.21183 1.19002 0.91393 0.89605 0.90088 0.79644 0.90155 0.90923 0.91113 0.91563 0.90794 0.91646 0.84524 0.95300 1.00355 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.03 11.32 59.84 0.68 1.71 16 2 N -0.38 -5.80 4.00 -63.88 -0.26 -6.06 16 3 N -0.31 -5.91 12.59 30.54 0.38 -5.53 16 4 C 0.07 1.50 11.24 -17.49 -0.20 1.30 16 5 C -0.20 -3.68 5.60 -105.05 -0.59 -4.27 16 6 C 0.07 1.05 6.73 -82.33 -0.55 0.49 16 7 C -0.05 -0.52 5.83 -27.64 -0.16 -0.69 16 8 C -0.11 -1.13 5.90 -26.49 -0.16 -1.29 16 9 C -0.12 -1.60 5.19 -26.48 -0.14 -1.73 16 10 C 0.16 2.76 2.86 -68.60 -0.20 2.56 16 11 H 0.04 0.73 7.82 -51.93 -0.41 0.32 16 12 N -0.67 -14.00 6.23 -108.93 -0.68 -14.68 16 13 C 0.16 3.96 4.22 -4.98 -0.02 3.94 16 14 C -0.51 -14.76 9.87 -34.44 -0.34 -15.10 16 15 H 0.08 2.46 8.06 -52.49 -0.42 2.04 16 16 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 17 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 18 Si 0.87 21.84 27.47 -169.99 -4.67 17.17 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.27 -6.38 6.54 56.52 0.37 -6.01 16 22 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 23 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.08 0.57 7.90 -51.93 -0.41 0.16 16 25 H 0.19 3.90 5.85 -52.48 -0.31 3.60 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.71 8.11 -51.92 -0.42 0.29 16 30 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 31 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.34 6.67 8.38 -39.29 -0.33 6.34 16 33 H 0.03 0.72 4.33 -51.93 -0.22 0.49 16 34 H -0.02 -0.51 7.49 -51.93 -0.39 -0.90 16 35 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 282.45 15.07 4.26 4.26 Total: -1.00 -33.54 282.45 -7.00 -40.53 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.03 Total: 2.67 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -1.77 Total: -11.16 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: 0.22 Total: -53.46 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -33.54 -7.00 -40.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037051867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.296 kcal (2) G-P(sol) polarization free energy of solvation -33.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds