Wall clock time and date at job start Sun Mar 29 2020 22:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.40298 * 126.09696 * 2 1 4 4 C 1.31068 * 108.26859 * 180.34050 * 3 2 1 5 5 C 1.39287 * 108.08085 * 359.56566 * 4 3 2 6 6 C 1.34325 * 126.08760 * 180.02562 * 2 1 3 7 7 C 1.50823 * 128.04083 * 359.83940 * 6 2 1 8 8 C 1.53355 * 108.38935 * 196.63869 * 7 6 2 9 9 C 1.53102 * 109.51204 * 310.06296 * 8 7 6 10 10 C 1.50846 * 127.89979 * 180.10840 * 5 4 3 11 11 H 1.09000 * 109.68285 * 77.17370 * 10 5 4 12 12 N 1.46903 * 109.67809 * 316.62050 * 10 5 4 13 13 C 1.46897 * 111.00251 * 85.00085 * 12 10 5 14 14 C 1.50701 * 109.47155 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99895 * 359.97438 * 14 13 12 16 16 C 1.37871 * 119.99735 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99868 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 120.00421 * 359.97438 * 16 14 13 19 19 H 1.48501 * 109.47120 * 89.99825 * 18 16 14 20 20 H 1.48501 * 109.47397 * 210.00086 * 18 16 14 21 21 H 1.48495 * 109.46885 * 330.00250 * 18 16 14 22 22 H 1.09007 * 109.46966 * 269.99660 * 1 2 3 23 23 H 1.08999 * 109.47400 * 29.99630 * 1 2 3 24 24 H 1.09002 * 109.47628 * 150.00408 * 1 2 3 25 25 H 1.08003 * 125.95448 * 179.73445 * 4 3 2 26 26 H 1.09004 * 109.67832 * 76.91378 * 7 6 2 27 27 H 1.09001 * 109.68563 * 316.36944 * 7 6 2 28 28 H 1.08998 * 109.47184 * 190.05117 * 8 7 6 29 29 H 1.09008 * 109.46311 * 70.07250 * 8 7 6 30 30 H 1.09006 * 109.46393 * 310.25414 * 9 8 7 31 31 H 1.09005 * 109.46548 * 190.27376 * 9 8 7 32 32 H 1.00899 * 110.99421 * 208.95200 * 12 10 5 33 33 H 1.08997 * 109.46652 * 299.99724 * 13 12 10 34 34 H 1.09004 * 109.47071 * 59.99588 * 13 12 10 35 35 H 0.96998 * 120.00638 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2915 1.1336 0.0000 4 6 3.5392 0.7324 -0.0074 5 6 3.5454 -0.6605 -0.0023 6 6 2.2561 -1.0855 -0.0005 7 6 1.8437 -2.5362 0.0022 8 6 3.0535 -3.3824 0.4172 9 6 4.2699 -2.9812 -0.4214 10 6 4.7398 -1.5818 -0.0051 11 1 5.1749 -1.6220 0.9935 12 7 5.7406 -1.0914 -0.9622 13 6 6.6061 -0.0773 -0.3457 14 6 7.6179 0.4005 -1.3552 15 1 7.6182 -0.0086 -2.3546 16 6 8.5432 1.3600 -1.0027 17 7 9.4265 1.7766 -1.8835 18 14 8.5423 2.0682 0.7258 19 1 9.4264 1.2516 1.5958 20 1 9.0398 3.4669 0.6880 21 1 7.1599 2.0490 1.2678 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5138 24 1 -0.3634 -0.8900 -0.5138 25 1 4.4106 1.3705 -0.0134 26 1 1.5175 -2.8270 -0.9964 27 1 1.0303 -2.6854 0.7124 28 1 2.8321 -4.4372 0.2544 29 1 3.2688 -3.2152 1.4726 30 1 3.9972 -2.9741 -1.4768 31 1 5.0752 -3.6978 -0.2593 32 1 6.2861 -1.8531 -1.3368 33 1 5.9991 0.7645 -0.0127 34 1 7.1239 -0.5125 0.5092 35 1 10.0777 2.4513 -1.6356 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037051867.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:33 Heat of formation + Delta-G solvation = 49.794703 kcal Electronic energy + Delta-G solvation = -16727.665041 eV Core-core repulsion = 14146.944662 eV Total energy + Delta-G solvation = -2580.720379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.42697 -38.29643 -36.08262 -34.65023 -33.78547 -30.76656 -30.27735 -27.90409 -27.40806 -24.10868 -22.96336 -22.52011 -21.69586 -19.55521 -18.89443 -17.55751 -16.83239 -16.57225 -16.00944 -15.52099 -15.45066 -14.85495 -14.67927 -14.50502 -14.12103 -13.86705 -13.68102 -13.52966 -13.16982 -12.86695 -12.79674 -12.46494 -11.89805 -11.77123 -11.71037 -11.59684 -11.39823 -11.19964 -10.81017 -10.11804 -9.22290 -9.01090 -8.30038 -6.32983 0.93822 1.31914 1.35003 1.45933 1.71506 1.85315 2.33075 3.04104 3.52564 3.66885 3.72635 3.96942 4.24023 4.29171 4.29948 4.44026 4.51350 4.60893 4.62695 4.70542 4.77766 4.86935 4.94915 5.02496 5.07412 5.19664 5.29304 5.42731 5.45941 5.59844 5.71038 6.01173 6.26324 6.62570 6.69486 6.76640 6.86983 7.31875 8.86914 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.030629 B = 0.007104 C = 0.006244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.947505 B = 3940.260667 C = 4483.324748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.372 5.372 3 N -0.344 5.344 4 C 0.044 3.956 5 C -0.241 4.241 6 C 0.089 3.911 7 C -0.047 4.047 8 C -0.103 4.103 9 C -0.116 4.116 10 C 0.158 3.842 11 H 0.032 0.968 12 N -0.681 5.681 13 C 0.176 3.824 14 C -0.523 4.523 15 H 0.038 0.962 16 C 0.010 3.990 17 N -0.947 5.947 18 Si 0.944 3.056 19 H -0.263 1.263 20 H -0.281 1.281 21 H -0.254 1.254 22 H 0.089 0.911 23 H 0.087 0.913 24 H 0.117 0.883 25 H 0.159 0.841 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.339 0.661 33 H 0.026 0.974 34 H -0.018 1.018 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.799 -11.996 7.738 24.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.154 5.154 3 N -0.167 5.167 4 C -0.139 4.139 5 C -0.253 4.253 6 C -0.042 4.042 7 C -0.086 4.086 8 C -0.141 4.141 9 C -0.154 4.154 10 C 0.047 3.953 11 H 0.049 0.951 12 N -0.312 5.312 13 C 0.047 3.953 14 C -0.561 4.561 15 H 0.056 0.944 16 C -0.187 4.187 17 N -0.588 5.588 18 Si 0.768 3.232 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.178 1.178 22 H 0.108 0.892 23 H 0.105 0.895 24 H 0.135 0.865 25 H 0.176 0.824 26 H 0.119 0.881 27 H 0.126 0.874 28 H 0.125 0.875 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.044 0.956 34 H -0.001 1.001 35 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -21.038 -10.377 7.434 24.608 hybrid contribution 1.923 0.062 0.786 2.078 sum -19.114 -10.315 8.220 23.223 Atomic orbital electron populations 1.22205 0.71945 1.05903 1.04720 1.48566 1.07720 1.02866 1.56285 1.77403 1.01843 1.09300 1.28144 1.23654 0.94643 0.96234 0.99380 1.20070 0.95095 0.93210 1.16962 1.21459 0.89949 0.92372 1.00378 1.20533 0.99682 0.84033 1.04351 1.21518 0.92429 1.00562 0.99634 1.21768 0.99239 0.93373 1.00981 1.19947 0.89176 0.92974 0.93205 0.95070 1.60328 1.18353 1.16278 1.36246 1.19844 0.90701 0.92027 0.92686 1.21355 1.13780 1.22303 0.98690 0.94357 1.25811 0.94656 0.96621 1.01633 1.70045 1.19889 1.31981 1.36882 0.85754 0.79599 0.77985 0.79877 1.18829 1.20609 1.17842 0.89210 0.89457 0.86453 0.82361 0.88077 0.87388 0.87460 0.91695 0.91270 0.90497 0.84255 0.95648 1.00083 0.92401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.44 11.32 127.77 1.45 2.89 16 2 N -0.37 -10.57 4.00 -356.01 -1.42 -11.99 16 3 N -0.34 -13.10 12.59 -57.28 -0.72 -13.82 16 4 C 0.04 1.81 11.24 85.06 0.96 2.77 16 5 C -0.24 -8.63 5.60 -20.14 -0.11 -8.75 16 6 C 0.09 2.45 6.73 41.64 0.28 2.73 16 7 C -0.05 -0.75 5.83 30.01 0.17 -0.58 16 8 C -0.10 -1.67 5.90 30.75 0.18 -1.49 16 9 C -0.12 -2.77 5.19 30.75 0.16 -2.61 16 10 C 0.16 5.41 2.86 44.34 0.13 5.54 16 11 H 0.03 1.12 7.82 -2.39 -0.02 1.10 16 12 N -0.68 -29.13 6.23 -498.56 -3.11 -32.24 16 13 C 0.18 8.81 4.22 85.56 0.36 9.17 16 14 C -0.52 -31.39 9.87 25.60 0.25 -31.14 16 15 H 0.04 2.54 8.06 -2.91 -0.02 2.51 16 16 C 0.01 0.61 5.47 84.65 0.46 1.08 16 17 N -0.95 -60.81 13.96 21.45 0.30 -60.51 16 18 Si 0.94 45.94 27.47 68.60 1.88 47.83 16 19 H -0.26 -12.16 7.11 99.48 0.71 -11.45 16 20 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.25 -11.83 6.54 99.48 0.65 -11.18 16 22 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 23 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.12 1.02 7.90 -2.39 -0.02 1.01 16 25 H 0.16 7.17 5.85 -2.91 -0.02 7.15 16 26 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 27 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 29 H 0.06 1.11 8.11 -2.38 -0.02 1.09 16 30 H 0.07 1.73 8.11 -2.38 -0.02 1.71 16 31 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.34 13.80 8.38 -89.69 -0.75 13.04 16 33 H 0.03 1.31 4.33 -2.39 -0.01 1.30 16 34 H -0.02 -0.90 7.49 -2.38 -0.02 -0.92 16 35 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 Total: -1.00 -77.28 282.45 1.50 -75.78 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: 0.28 Total: 15.35 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 4.29 Total: -20.39 kcal Atomic # 7 Polarization: -113.61 SS G_CDS: -4.95 Total: -118.57 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.83 kcal Total: -77.28 1.50 -75.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037051867.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.572 kcal (2) G-P(sol) polarization free energy of solvation -77.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds