Wall clock time and date at job start Sun Mar 29 2020 22:05:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08998 * 109.47126 * 185.16115 * 3 2 1 5 5 C 1.50707 * 109.46908 * 305.15513 * 3 2 1 6 6 H 1.07997 * 119.99540 * 120.00014 * 5 3 2 7 7 C 1.37871 * 119.99901 * 300.00002 * 5 3 2 8 8 N 1.31520 * 120.00490 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47118 * 60.00253 * 9 7 5 11 11 H 1.48496 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46957 * 300.00268 * 9 7 5 13 13 N 1.46902 * 109.47479 * 65.15618 * 3 2 1 14 14 C 1.46899 * 110.99566 * 85.89851 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.82374 * 14 13 3 16 16 C 1.38619 * 120.44743 * 95.00416 * 15 14 13 17 17 C 1.38572 * 118.40274 * 179.97438 * 16 15 14 18 18 N 1.32355 * 119.10326 * 359.97438 * 17 16 15 19 19 C 1.31779 * 120.81971 * 0.02562 * 18 17 16 20 20 C 1.50693 * 119.12284 * 179.97438 * 19 18 17 21 21 N 1.31811 * 121.75339 * 359.71718 * 19 18 17 22 22 H 1.09005 * 109.46739 * 174.84890 * 1 2 3 23 23 H 1.08999 * 109.47071 * 54.85329 * 1 2 3 24 24 H 1.08994 * 109.47389 * 294.84641 * 1 2 3 25 25 H 1.09003 * 109.46907 * 119.99603 * 2 1 3 26 26 H 1.08997 * 109.47823 * 239.99762 * 2 1 3 27 27 H 0.96995 * 120.00321 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99678 * 321.94692 * 13 3 2 29 29 H 1.08995 * 109.47219 * 294.82205 * 14 13 3 30 30 H 1.08999 * 109.47280 * 54.82882 * 14 13 3 31 31 H 1.08004 * 120.79887 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.45012 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47432 * 90.00048 * 20 19 18 34 34 H 1.09003 * 109.47171 * 210.00132 * 20 19 18 35 35 H 1.09002 * 109.47584 * 329.99292 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1617 6 1 0.8269 3.0627 -0.9841 7 6 1.6612 1.7558 -2.4512 8 7 2.4027 0.6913 -2.6675 9 14 0.9121 2.6805 -3.8911 10 1 1.4065 4.0808 -3.8914 11 1 1.3013 2.0174 -5.1615 12 1 -0.5676 2.6780 -3.7650 13 7 1.6546 2.0982 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2829 2.6255 3.5441 16 6 1.5399 2.0426 4.5589 17 6 1.2331 2.8066 5.6735 18 7 1.6573 4.0589 5.7322 19 6 2.3618 4.5800 4.7480 20 6 2.8248 6.0101 4.8545 21 7 2.6766 3.8820 3.6751 22 1 -0.3633 -1.0236 -0.0923 23 1 -0.3633 0.5916 -0.8403 24 1 -0.3634 0.4318 0.9325 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.5608 0.3865 -3.5746 28 1 0.7319 1.8105 1.5466 29 1 2.6479 0.7731 2.5494 30 1 3.6322 2.1361 1.9648 31 1 1.2081 1.0176 4.4825 32 1 0.6558 2.3858 6.4834 33 1 3.8031 6.0406 5.3341 34 1 2.8954 6.4444 3.8572 35 1 2.1107 6.5799 5.4490 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038037893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:22 Heat of formation + Delta-G solvation = 39.868880 kcal Electronic energy + Delta-G solvation = -16289.825445 eV Core-core repulsion = 13708.674650 eV Total energy + Delta-G solvation = -2581.150795 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.88055 -36.75382 -34.15043 -33.27031 -32.06174 -30.44413 -28.43608 -27.03784 -25.17340 -23.31081 -23.08999 -21.54628 -19.36451 -17.49892 -16.61736 -15.74342 -15.22391 -15.08185 -14.70425 -14.46521 -13.69424 -13.43721 -12.97126 -12.75821 -12.57318 -12.40048 -12.26240 -11.89814 -11.61499 -10.91641 -10.78185 -10.73189 -10.55770 -10.43474 -10.03353 -9.85145 -9.62132 -9.27443 -9.11133 -8.93049 -8.35114 -7.31503 -5.98521 -3.99925 1.04011 1.24397 3.34847 3.38950 3.42783 3.85871 4.06074 4.23095 4.44710 4.63583 5.11884 5.22522 5.33290 5.38080 5.45469 5.54198 5.57420 5.79285 5.94478 6.05220 6.15042 6.29758 6.32527 6.52348 6.58782 6.83305 7.17686 7.21308 7.24767 7.47901 7.64677 7.86277 8.22580 8.30319 8.45135 8.55916 9.04941 9.63475 11.08564 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.005825 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.215041 B = 4806.000044 C = 5305.107359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.146 4.146 3 C 0.217 3.783 4 H 0.036 0.964 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.278 1.278 13 N -0.672 5.672 14 C 0.102 3.898 15 C 0.202 3.798 16 C -0.236 4.236 17 C 0.146 3.854 18 N -0.532 5.532 19 C 0.312 3.688 20 C -0.083 4.083 21 N -0.498 5.498 22 H 0.024 0.976 23 H 0.070 0.930 24 H 0.026 0.974 25 H 0.011 0.989 26 H 0.095 0.905 27 H 0.260 0.740 28 H 0.327 0.673 29 H 0.041 0.959 30 H 0.089 0.911 31 H 0.143 0.857 32 H 0.164 0.836 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.009 1.957 13.515 13.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.186 4.186 3 C 0.110 3.890 4 H 0.054 0.946 5 C -0.527 4.527 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.304 5.304 14 C -0.028 4.028 15 C 0.054 3.946 16 C -0.258 4.258 17 C -0.020 4.020 18 N -0.248 5.248 19 C 0.045 3.955 20 C -0.142 4.142 21 N -0.213 5.213 22 H 0.043 0.957 23 H 0.089 0.911 24 H 0.045 0.955 25 H 0.030 0.970 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.145 0.855 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.161 0.839 32 H 0.181 0.819 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.336 3.400 13.237 13.670 hybrid contribution -0.952 -1.578 -0.636 1.950 sum -1.288 1.822 12.601 12.797 Atomic orbital electron populations 1.21604 0.97641 0.98764 1.00792 1.22130 0.95068 1.01001 1.00398 1.19264 0.96234 0.88563 0.84943 0.94629 1.20995 1.30647 1.11518 0.89560 0.92056 1.24896 0.95521 0.95168 0.98692 1.69863 1.38965 1.23939 1.20860 0.86610 0.79512 0.80043 0.81535 1.20296 1.21481 1.20405 1.60792 1.03180 1.63463 1.02942 1.20886 0.99115 0.94452 0.88331 1.21962 0.88436 0.89819 0.94359 1.22787 1.03050 1.03210 0.96773 1.23101 0.93449 0.89154 0.96267 1.68206 1.12907 1.13458 1.30179 1.23292 0.89884 0.97403 0.84949 1.20533 1.01720 0.87821 1.04091 1.68179 1.22288 1.07282 1.23542 0.95674 0.91132 0.95507 0.97044 0.88687 0.93023 0.85533 0.94114 0.89315 0.83887 0.81870 0.89950 0.89451 0.89960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.71 9.40 37.16 0.35 -2.36 16 2 C -0.15 -3.31 5.51 -26.73 -0.15 -3.46 16 3 C 0.22 5.26 2.33 -68.86 -0.16 5.10 16 4 H 0.04 0.95 7.70 -51.93 -0.40 0.55 16 5 C -0.49 -13.14 7.25 -34.44 -0.25 -13.39 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.57 5.28 -17.82 -0.09 1.47 16 8 N -0.90 -24.98 11.38 55.43 0.63 -24.35 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.67 -14.15 6.19 -109.22 -0.68 -14.82 16 14 C 0.10 1.84 5.86 -4.97 -0.03 1.81 16 15 C 0.20 3.35 6.38 -82.24 -0.52 2.82 16 16 C -0.24 -3.18 9.84 -39.32 -0.39 -3.56 16 17 C 0.15 1.83 11.30 -17.20 -0.19 1.64 16 18 N -0.53 -7.74 10.33 -10.73 -0.11 -7.85 16 19 C 0.31 4.77 7.64 -157.20 -1.20 3.57 16 20 C -0.08 -0.95 10.32 36.00 0.37 -0.58 16 21 N -0.50 -8.72 10.27 -6.99 -0.07 -8.79 16 22 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 23 H 0.07 1.63 6.85 -51.93 -0.36 1.27 16 24 H 0.03 0.49 6.63 -51.93 -0.34 0.15 16 25 H 0.01 0.23 7.50 -51.93 -0.39 -0.16 16 26 H 0.09 2.43 6.22 -51.93 -0.32 2.10 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.66 16 28 H 0.33 6.55 6.69 -39.29 -0.26 6.29 16 29 H 0.04 0.67 7.46 -51.93 -0.39 0.28 16 30 H 0.09 1.69 7.93 -51.93 -0.41 1.28 16 31 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 32 H 0.16 1.41 8.06 -52.49 -0.42 0.99 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 291.96 15.07 4.40 4.40 Total: -1.00 -29.58 291.96 -8.07 -37.66 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.96 Total: 4.39 kcal Atomic # 6 Polarization: -4.66 SS G_CDS: -2.27 Total: -6.93 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.23 Total: -55.82 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -29.58 -8.07 -37.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038037893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.526 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds