Wall clock time and date at job start Sun Mar 29 2020 22:05:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 H 1.08998 * 109.47126 * 185.16115 * 3 2 1 5 5 C 1.50707 * 109.46908 * 305.15513 * 3 2 1 6 6 H 1.07997 * 119.99540 * 120.00014 * 5 3 2 7 7 C 1.37871 * 119.99901 * 300.00002 * 5 3 2 8 8 N 1.31520 * 120.00490 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99873 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47118 * 60.00253 * 9 7 5 11 11 H 1.48496 * 109.47087 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.46957 * 300.00268 * 9 7 5 13 13 N 1.46902 * 109.47479 * 65.15618 * 3 2 1 14 14 C 1.46899 * 110.99566 * 85.89851 * 13 3 2 15 15 C 1.50704 * 109.46488 * 174.82374 * 14 13 3 16 16 C 1.38619 * 120.44743 * 95.00416 * 15 14 13 17 17 C 1.38572 * 118.40274 * 179.97438 * 16 15 14 18 18 N 1.32355 * 119.10326 * 359.97438 * 17 16 15 19 19 C 1.31779 * 120.81971 * 0.02562 * 18 17 16 20 20 C 1.50693 * 119.12284 * 179.97438 * 19 18 17 21 21 N 1.31811 * 121.75339 * 359.71718 * 19 18 17 22 22 H 1.09005 * 109.46739 * 174.84890 * 1 2 3 23 23 H 1.08999 * 109.47071 * 54.85329 * 1 2 3 24 24 H 1.08994 * 109.47389 * 294.84641 * 1 2 3 25 25 H 1.09003 * 109.46907 * 119.99603 * 2 1 3 26 26 H 1.08997 * 109.47823 * 239.99762 * 2 1 3 27 27 H 0.96995 * 120.00321 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99678 * 321.94692 * 13 3 2 29 29 H 1.08995 * 109.47219 * 294.82205 * 14 13 3 30 30 H 1.08999 * 109.47280 * 54.82882 * 14 13 3 31 31 H 1.08004 * 120.79887 * 359.97438 * 16 15 14 32 32 H 1.07997 * 120.45012 * 179.97438 * 17 16 15 33 33 H 1.09003 * 109.47432 * 90.00048 * 20 19 18 34 34 H 1.09003 * 109.47171 * 210.00132 * 20 19 18 35 35 H 1.09002 * 109.47584 * 329.99292 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1888 -1.1617 6 1 0.8269 3.0627 -0.9841 7 6 1.6612 1.7558 -2.4512 8 7 2.4027 0.6913 -2.6675 9 14 0.9121 2.6805 -3.8911 10 1 1.4065 4.0808 -3.8914 11 1 1.3013 2.0174 -5.1615 12 1 -0.5676 2.6780 -3.7650 13 7 1.6546 2.0982 1.2568 14 6 2.6431 1.8368 2.3115 15 6 2.2829 2.6255 3.5441 16 6 1.5399 2.0426 4.5589 17 6 1.2331 2.8066 5.6735 18 7 1.6573 4.0589 5.7322 19 6 2.3618 4.5800 4.7480 20 6 2.8248 6.0101 4.8545 21 7 2.6766 3.8820 3.6751 22 1 -0.3633 -1.0236 -0.0923 23 1 -0.3633 0.5916 -0.8403 24 1 -0.3634 0.4318 0.9325 25 1 1.8933 -0.5138 0.8901 26 1 1.8934 -0.5138 -0.8899 27 1 2.5608 0.3865 -3.5746 28 1 0.7319 1.8105 1.5466 29 1 2.6479 0.7731 2.5494 30 1 3.6322 2.1361 1.9648 31 1 1.2081 1.0176 4.4825 32 1 0.6558 2.3858 6.4834 33 1 3.8031 6.0406 5.3341 34 1 2.8954 6.4444 3.8572 35 1 2.1107 6.5799 5.4490 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038037893.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:21 Heat of formation + Delta-G solvation = 20.326059 kcal Electronic energy + Delta-G solvation = -16290.672885 eV Core-core repulsion = 13708.674650 eV Total energy + Delta-G solvation = -2581.998235 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.99042 -38.46732 -35.57758 -34.36810 -33.82673 -32.08906 -29.49935 -28.70452 -26.83730 -25.10440 -24.21279 -22.79984 -21.21856 -18.69560 -18.26698 -17.22514 -16.80165 -16.34862 -16.12512 -15.86743 -15.32842 -14.82833 -14.42923 -14.32954 -13.95313 -13.73740 -13.44223 -13.19282 -13.15409 -12.79801 -12.63560 -12.44663 -11.95319 -11.82643 -11.72429 -11.54142 -11.42481 -11.02023 -10.42719 -10.34818 -10.14774 -8.99532 -8.05726 -6.13706 -0.05781 0.14932 1.43707 1.44783 1.52165 2.45267 2.74618 3.00726 3.18374 3.23180 3.52816 3.89450 4.03085 4.19300 4.38671 4.53618 4.55374 4.59291 4.63168 4.67043 4.72658 4.78869 4.98226 5.07702 5.10857 5.33692 5.42459 5.53710 5.71861 5.75690 5.81674 6.12726 6.30812 6.62925 6.77685 6.96373 7.19466 7.53461 8.99311 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.032392 B = 0.005825 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.215041 B = 4806.000044 C = 5305.107359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.224 3.776 4 H 0.000 1.000 5 C -0.502 4.502 6 H 0.047 0.953 7 C 0.017 3.983 8 N -0.918 5.918 9 Si 0.949 3.051 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.271 1.271 13 N -0.680 5.680 14 C 0.109 3.891 15 C 0.176 3.824 16 C -0.227 4.227 17 C 0.151 3.849 18 N -0.539 5.539 19 C 0.296 3.704 20 C -0.081 4.081 21 N -0.535 5.535 22 H 0.044 0.956 23 H 0.042 0.958 24 H 0.049 0.951 25 H 0.033 0.967 26 H 0.063 0.937 27 H 0.260 0.740 28 H 0.334 0.666 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.172 0.828 32 H 0.208 0.792 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.317 1.721 15.209 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.018 0.982 5 C -0.541 4.541 6 H 0.066 0.934 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.210 1.210 12 H -0.197 1.197 13 N -0.312 5.312 14 C -0.021 4.021 15 C 0.030 3.970 16 C -0.249 4.249 17 C -0.015 4.015 18 N -0.255 5.255 19 C 0.030 3.970 20 C -0.139 4.139 21 N -0.251 5.251 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.068 0.932 25 H 0.052 0.948 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.153 0.847 29 H 0.079 0.921 30 H 0.084 0.916 31 H 0.190 0.810 32 H 0.225 0.775 33 H 0.116 0.884 34 H 0.100 0.900 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.647 3.167 14.941 15.362 hybrid contribution -0.526 -1.498 -1.065 1.912 sum -2.173 1.669 13.876 14.144 Atomic orbital electron populations 1.21488 0.95931 0.99720 1.00806 1.21957 0.96504 0.99472 0.99888 1.18988 0.93828 0.89696 0.85920 0.98211 1.21209 1.30553 1.11334 0.90954 0.93425 1.25538 0.95919 0.95883 1.00849 1.69986 1.39790 1.24919 1.21163 0.85746 0.79056 0.78694 0.78916 1.20464 1.21013 1.19669 1.60584 1.04221 1.63518 1.02911 1.20768 0.97163 0.95919 0.88239 1.21813 0.90376 0.90025 0.94779 1.23041 1.01600 1.04478 0.95825 1.23855 0.92450 0.88303 0.96851 1.68314 1.12871 1.14529 1.29776 1.23866 0.90019 0.98542 0.84618 1.20628 1.02925 0.86113 1.04258 1.68119 1.23691 1.08197 1.25102 0.93660 0.93900 0.93180 0.94803 0.91839 0.93119 0.84719 0.92123 0.91576 0.81034 0.77512 0.88381 0.90007 0.88371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.40 71.98 0.68 -4.20 16 2 C -0.14 -6.21 5.51 30.59 0.17 -6.04 16 3 C 0.22 11.03 2.33 44.17 0.10 11.14 16 4 H 0.00 0.00 7.70 -2.39 -0.02 -0.02 16 5 C -0.50 -27.48 7.25 25.60 0.19 -27.29 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.66 16 7 C 0.02 0.91 5.28 84.65 0.45 1.36 16 8 N -0.92 -52.07 11.38 21.45 0.24 -51.82 16 9 Si 0.95 44.05 29.54 68.60 2.03 46.07 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 13 N -0.68 -28.60 6.19 -499.45 -3.09 -31.69 16 14 C 0.11 3.89 5.86 85.56 0.50 4.39 16 15 C 0.18 5.68 6.38 42.58 0.27 5.95 16 16 C -0.23 -5.47 9.84 22.44 0.22 -5.25 16 17 C 0.15 3.27 11.30 84.69 0.96 4.23 16 18 N -0.54 -14.41 10.33 -187.86 -1.94 -16.36 16 19 C 0.30 8.74 7.64 138.75 1.06 9.80 16 20 C -0.08 -1.77 10.32 71.23 0.74 -1.04 16 21 N -0.54 -18.62 10.27 -176.02 -1.81 -20.43 16 22 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 23 H 0.04 1.94 6.85 -2.39 -0.02 1.92 16 24 H 0.05 1.74 6.63 -2.39 -0.02 1.72 16 25 H 0.03 1.33 7.50 -2.39 -0.02 1.31 16 26 H 0.06 3.27 6.22 -2.39 -0.01 3.26 16 27 H 0.26 14.16 8.31 -92.71 -0.77 13.38 16 28 H 0.33 12.99 6.69 -89.69 -0.60 12.39 16 29 H 0.06 1.90 7.46 -2.39 -0.02 1.88 16 30 H 0.07 2.62 7.93 -2.39 -0.02 2.60 16 31 H 0.17 3.04 8.06 -2.91 -0.02 3.02 16 32 H 0.21 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -64.78 291.96 1.24 -63.55 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: 0.48 Total: 17.63 kcal Atomic # 6 Polarization: -12.28 SS G_CDS: 5.33 Total: -6.95 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -6.60 Total: -120.30 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -64.78 1.24 -63.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038037893.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.871 kcal (2) G-P(sol) polarization free energy of solvation -64.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.545 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds