Wall clock time and date at job start Sun Mar 29 2020 22:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46887 * 2 1 4 4 H 1.09004 * 109.46529 * 174.08734 * 3 2 1 5 5 C 1.50703 * 109.47051 * 54.08773 * 3 2 1 6 6 H 1.07994 * 119.99800 * 239.99653 * 5 3 2 7 7 C 1.37880 * 119.99668 * 59.99835 * 5 3 2 8 8 N 1.31508 * 120.00195 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99584 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46931 * 90.00210 * 9 7 5 11 11 H 1.48497 * 109.46974 * 210.00235 * 9 7 5 12 12 H 1.48499 * 109.47027 * 330.00417 * 9 7 5 13 13 N 1.46897 * 109.47241 * 294.08541 * 3 2 1 14 14 C 1.46895 * 111.00083 * 275.78102 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.22624 * 14 13 3 16 16 C 1.38616 * 120.45087 * 94.99826 * 15 14 13 17 17 C 1.38573 * 118.40104 * 180.02562 * 16 15 14 18 18 N 1.32349 * 119.10696 * 359.97438 * 17 16 15 19 19 C 1.31790 * 120.81598 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.12040 * 179.97438 * 19 18 17 21 21 N 1.31810 * 121.75160 * 359.71382 * 19 18 17 22 22 H 1.08990 * 109.47145 * 298.55750 * 1 2 3 23 23 H 1.09002 * 109.46984 * 178.55457 * 1 2 3 24 24 H 1.09002 * 109.46773 * 58.55576 * 1 2 3 25 25 H 1.08995 * 109.47368 * 119.99652 * 2 1 3 26 26 H 1.08998 * 109.47460 * 240.00429 * 2 1 3 27 27 H 0.97000 * 119.99491 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99817 * 39.73228 * 13 3 2 29 29 H 1.09005 * 109.47061 * 296.21895 * 14 13 3 30 30 H 1.08997 * 109.47274 * 56.22411 * 14 13 3 31 31 H 1.07998 * 120.79964 * 0.02562 * 16 15 14 32 32 H 1.07998 * 120.44967 * 179.97438 * 17 16 15 33 33 H 1.08991 * 109.47349 * 89.99748 * 20 19 18 34 34 H 1.09001 * 109.46796 * 209.99994 * 20 19 18 35 35 H 1.09003 * 109.46827 * 329.99456 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4217 2.1940 1.1508 6 1 0.8148 3.0670 0.9617 7 6 1.6308 1.7666 2.4449 8 7 2.3702 0.7038 2.6750 9 14 0.8650 2.6985 3.8714 10 1 -0.4774 2.1360 4.1663 11 1 1.7311 2.5670 5.0704 12 1 0.7323 4.1330 3.5113 13 7 1.6703 2.0927 -1.2644 14 6 2.6511 1.7939 -2.3163 15 6 2.1917 2.3989 -3.6179 16 6 2.6471 3.6474 -4.0118 17 6 2.1968 4.1635 -5.2164 18 7 1.3527 3.4518 -5.9463 19 6 0.9409 2.2677 -5.5398 20 6 -0.0209 1.4904 -6.4010 21 7 1.3519 1.7432 -4.4026 22 1 -0.3633 0.4912 0.9025 23 1 -0.3633 -1.0274 -0.0259 24 1 -0.3633 0.5361 -0.8768 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.5170 0.4030 3.5855 28 1 0.7405 1.8248 -1.5503 29 1 3.6183 2.2149 -2.0415 30 1 2.7440 0.7139 -2.4304 31 1 3.3365 4.2046 -3.3947 32 1 2.5300 5.1333 -5.5551 33 1 0.5382 0.8614 -7.0935 34 1 -0.6503 0.8642 -5.7685 35 1 -0.6466 2.1834 -6.9635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000038037894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:25 Heat of formation + Delta-G solvation = 38.519728 kcal Electronic energy + Delta-G solvation = -16323.015025 eV Core-core repulsion = 13741.805727 eV Total energy + Delta-G solvation = -2581.209298 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90421 -36.73783 -34.15715 -33.28837 -32.06332 -30.40255 -28.45878 -27.04452 -25.17186 -23.30301 -23.02473 -21.62206 -19.32440 -17.45824 -16.60963 -15.74253 -15.25492 -15.07173 -14.71232 -14.58020 -13.64063 -13.38551 -12.95138 -12.67739 -12.56613 -12.41502 -12.28469 -11.94104 -11.62721 -10.93743 -10.77613 -10.73668 -10.53245 -10.50313 -10.02018 -9.85989 -9.55462 -9.25280 -9.12803 -8.95065 -8.36483 -7.31943 -5.99350 -4.01014 1.05351 1.20770 3.31794 3.38706 3.42965 3.83721 4.02511 4.20230 4.43722 4.65826 5.15377 5.23570 5.32687 5.44326 5.45749 5.51448 5.52315 5.76545 5.90935 6.10142 6.17881 6.36681 6.40354 6.56493 6.57557 6.93179 7.16858 7.22336 7.26498 7.50285 7.67862 7.85492 8.22820 8.24679 8.45123 8.55753 9.03985 9.62545 11.07807 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037074 B = 0.005603 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.060916 B = 4995.842424 C = 5275.334785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.146 4.146 3 C 0.216 3.784 4 H 0.035 0.965 5 C -0.489 4.489 6 H 0.061 0.939 7 C 0.058 3.942 8 N -0.895 5.895 9 Si 0.894 3.106 10 H -0.282 1.282 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.675 5.675 14 C 0.102 3.898 15 C 0.196 3.804 16 C -0.216 4.216 17 C 0.144 3.856 18 N -0.531 5.531 19 C 0.311 3.689 20 C -0.083 4.083 21 N -0.517 5.517 22 H 0.065 0.935 23 H 0.023 0.977 24 H 0.029 0.971 25 H 0.093 0.907 26 H 0.013 0.987 27 H 0.259 0.741 28 H 0.332 0.668 29 H 0.085 0.915 30 H 0.045 0.955 31 H 0.149 0.851 32 H 0.165 0.835 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.584 2.358 -13.446 13.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.053 0.947 5 C -0.528 4.528 6 H 0.079 0.921 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.307 5.307 14 C -0.028 4.028 15 C 0.049 3.951 16 C -0.238 4.238 17 C -0.021 4.021 18 N -0.246 5.246 19 C 0.043 3.957 20 C -0.141 4.141 21 N -0.232 5.232 22 H 0.084 0.916 23 H 0.042 0.958 24 H 0.048 0.952 25 H 0.111 0.889 26 H 0.031 0.969 27 H 0.069 0.931 28 H 0.150 0.850 29 H 0.103 0.897 30 H 0.063 0.937 31 H 0.166 0.834 32 H 0.183 0.817 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.838 2.341 -13.679 13.903 hybrid contribution 0.075 0.044 1.213 1.216 sum -0.763 2.385 -12.466 12.715 Atomic orbital electron populations 1.21552 0.97615 0.98085 1.01186 1.22101 0.95157 1.00931 1.00312 1.19253 0.96246 0.88843 0.84821 0.94689 1.21017 1.30603 1.11580 0.89635 0.92054 1.24897 0.95509 0.95176 0.98672 1.69882 1.39095 1.24127 1.20384 0.86558 0.78995 0.80342 0.81881 1.20838 1.21393 1.19932 1.61040 1.03937 1.63025 1.02739 1.20928 0.97546 0.98053 0.86278 1.21963 0.88331 0.90358 0.94436 1.22774 1.04093 0.97962 0.99013 1.23157 0.90317 0.98543 0.90117 1.68203 1.13300 1.07838 1.35284 1.23202 0.93768 0.88757 0.89964 1.20521 0.96574 0.99057 0.97953 1.68131 1.12675 1.37058 1.05364 0.91607 0.95829 0.95163 0.88884 0.96868 0.93076 0.84953 0.89660 0.93672 0.83368 0.81749 0.89976 0.89675 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.39 37.16 0.35 -2.41 16 2 C -0.15 -3.40 5.50 -26.73 -0.15 -3.55 16 3 C 0.22 5.24 2.33 -68.86 -0.16 5.08 16 4 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 5 C -0.49 -13.07 7.35 -34.44 -0.25 -13.32 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.57 5.22 -17.82 -0.09 1.48 16 8 N -0.90 -24.91 11.39 55.43 0.63 -24.28 16 9 Si 0.89 21.14 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 13 N -0.68 -14.26 6.24 -109.21 -0.68 -14.94 16 14 C 0.10 1.83 5.84 -4.98 -0.03 1.80 16 15 C 0.20 3.22 6.30 -82.24 -0.52 2.71 16 16 C -0.22 -3.00 9.84 -39.32 -0.39 -3.39 16 17 C 0.14 1.83 11.30 -17.21 -0.19 1.63 16 18 N -0.53 -7.65 10.34 -10.73 -0.11 -7.76 16 19 C 0.31 4.60 7.64 -157.18 -1.20 3.40 16 20 C -0.08 -0.90 10.32 36.01 0.37 -0.53 16 21 N -0.52 -8.64 10.27 -6.98 -0.07 -8.71 16 22 H 0.06 1.56 7.05 -51.93 -0.37 1.19 16 23 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 24 H 0.03 0.61 6.42 -51.93 -0.33 0.28 16 25 H 0.09 2.42 6.25 -51.93 -0.32 2.10 16 26 H 0.01 0.28 7.24 -51.93 -0.38 -0.10 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.33 7.08 6.55 -39.29 -0.26 6.82 16 29 H 0.09 1.44 8.05 -51.93 -0.42 1.02 16 30 H 0.05 0.84 7.23 -51.93 -0.38 0.46 16 31 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 33 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -29.14 291.59 -8.06 -37.20 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.94 Total: 5.07 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: -2.26 Total: -7.10 kcal Atomic # 7 Polarization: -55.45 SS G_CDS: -0.23 Total: -55.68 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.14 -8.06 -37.20 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038037894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.723 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds