Wall clock time and date at job start Sun Mar 29 2020 22:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46887 * 2 1 4 4 H 1.09004 * 109.46529 * 174.08734 * 3 2 1 5 5 C 1.50703 * 109.47051 * 54.08773 * 3 2 1 6 6 H 1.07994 * 119.99800 * 239.99653 * 5 3 2 7 7 C 1.37880 * 119.99668 * 59.99835 * 5 3 2 8 8 N 1.31508 * 120.00195 * 0.02562 * 7 5 3 9 9 Si 1.86807 * 119.99584 * 179.97438 * 7 5 3 10 10 H 1.48502 * 109.46931 * 90.00210 * 9 7 5 11 11 H 1.48497 * 109.46974 * 210.00235 * 9 7 5 12 12 H 1.48499 * 109.47027 * 330.00417 * 9 7 5 13 13 N 1.46897 * 109.47241 * 294.08541 * 3 2 1 14 14 C 1.46895 * 111.00083 * 275.78102 * 13 3 2 15 15 C 1.50706 * 109.47003 * 176.22624 * 14 13 3 16 16 C 1.38616 * 120.45087 * 94.99826 * 15 14 13 17 17 C 1.38573 * 118.40104 * 180.02562 * 16 15 14 18 18 N 1.32349 * 119.10696 * 359.97438 * 17 16 15 19 19 C 1.31790 * 120.81598 * 0.02562 * 18 17 16 20 20 C 1.50700 * 119.12040 * 179.97438 * 19 18 17 21 21 N 1.31810 * 121.75160 * 359.71382 * 19 18 17 22 22 H 1.08990 * 109.47145 * 298.55750 * 1 2 3 23 23 H 1.09002 * 109.46984 * 178.55457 * 1 2 3 24 24 H 1.09002 * 109.46773 * 58.55576 * 1 2 3 25 25 H 1.08995 * 109.47368 * 119.99652 * 2 1 3 26 26 H 1.08998 * 109.47460 * 240.00429 * 2 1 3 27 27 H 0.97000 * 119.99491 * 180.02562 * 8 7 5 28 28 H 1.00903 * 110.99817 * 39.73228 * 13 3 2 29 29 H 1.09005 * 109.47061 * 296.21895 * 14 13 3 30 30 H 1.08997 * 109.47274 * 56.22411 * 14 13 3 31 31 H 1.07998 * 120.79964 * 0.02562 * 16 15 14 32 32 H 1.07998 * 120.44967 * 179.97438 * 17 16 15 33 33 H 1.08991 * 109.47349 * 89.99748 * 20 19 18 34 34 H 1.09001 * 109.46796 * 209.99994 * 20 19 18 35 35 H 1.09003 * 109.46827 * 329.99456 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 3.1249 1.4443 0.1059 5 6 1.4217 2.1940 1.1508 6 1 0.8148 3.0670 0.9617 7 6 1.6308 1.7666 2.4449 8 7 2.3702 0.7038 2.6750 9 14 0.8650 2.6985 3.8714 10 1 -0.4774 2.1360 4.1663 11 1 1.7311 2.5670 5.0704 12 1 0.7323 4.1330 3.5113 13 7 1.6703 2.0927 -1.2644 14 6 2.6511 1.7939 -2.3163 15 6 2.1917 2.3989 -3.6179 16 6 2.6471 3.6474 -4.0118 17 6 2.1968 4.1635 -5.2164 18 7 1.3527 3.4518 -5.9463 19 6 0.9409 2.2677 -5.5398 20 6 -0.0209 1.4904 -6.4010 21 7 1.3519 1.7432 -4.4026 22 1 -0.3633 0.4912 0.9025 23 1 -0.3633 -1.0274 -0.0259 24 1 -0.3633 0.5361 -0.8768 25 1 1.8934 -0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 2.5170 0.4030 3.5855 28 1 0.7405 1.8248 -1.5503 29 1 3.6183 2.2149 -2.0415 30 1 2.7440 0.7139 -2.4304 31 1 3.3365 4.2046 -3.3947 32 1 2.5300 5.1333 -5.5551 33 1 0.5382 0.8614 -7.0935 34 1 -0.6503 0.8642 -5.7685 35 1 -0.6466 2.1834 -6.9635 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038037894.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:24 Heat of formation + Delta-G solvation = 19.693835 kcal Electronic energy + Delta-G solvation = -16323.831377 eV Core-core repulsion = 13741.805727 eV Total energy + Delta-G solvation = -2582.025650 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 235.138 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.01246 -38.47377 -35.59202 -34.36747 -33.83425 -32.09304 -29.49186 -28.74748 -26.82549 -25.13324 -24.17167 -22.86805 -21.21790 -18.57542 -18.34429 -17.21096 -16.79610 -16.47103 -16.12847 -15.91620 -15.33882 -14.77691 -14.41339 -14.28987 -13.90578 -13.76103 -13.46911 -13.31804 -13.09373 -12.81108 -12.59166 -12.46893 -11.94977 -11.88037 -11.79318 -11.56999 -11.42642 -11.00972 -10.43396 -10.33940 -10.21296 -9.04797 -8.05578 -6.13790 -0.05223 0.10354 1.44066 1.45914 1.55525 2.45918 2.72879 2.96711 3.16933 3.23920 3.55706 3.80761 4.07137 4.19445 4.39545 4.52115 4.54220 4.59589 4.64804 4.65338 4.72382 4.74754 5.01977 5.07292 5.10613 5.31372 5.40102 5.51801 5.65436 5.72760 5.80300 6.07891 6.28312 6.59895 6.70141 6.95958 7.14173 7.53530 9.00165 Molecular weight = 235.14amu Principal moments of inertia in cm(-1) A = 0.037074 B = 0.005603 C = 0.005306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.060916 B = 4995.842424 C = 5275.334785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.138 4.138 3 C 0.222 3.778 4 H 0.008 0.992 5 C -0.501 4.501 6 H 0.051 0.949 7 C 0.017 3.983 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.676 5.676 14 C 0.108 3.892 15 C 0.173 3.827 16 C -0.217 4.217 17 C 0.151 3.849 18 N -0.538 5.538 19 C 0.297 3.703 20 C -0.080 4.080 21 N -0.542 5.542 22 H 0.043 0.957 23 H 0.043 0.957 24 H 0.041 0.959 25 H 0.065 0.935 26 H 0.024 0.976 27 H 0.260 0.740 28 H 0.331 0.669 29 H 0.092 0.908 30 H 0.035 0.965 31 H 0.167 0.833 32 H 0.207 0.793 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.116 3.377 -14.600 15.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.178 4.178 3 C 0.114 3.886 4 H 0.026 0.974 5 C -0.540 4.540 6 H 0.069 0.931 7 C -0.182 4.182 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.307 5.307 14 C -0.022 4.022 15 C 0.028 3.972 16 C -0.239 4.239 17 C -0.015 4.015 18 N -0.254 5.254 19 C 0.030 3.970 20 C -0.139 4.139 21 N -0.258 5.258 22 H 0.062 0.938 23 H 0.062 0.938 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.149 0.851 29 H 0.110 0.890 30 H 0.053 0.947 31 H 0.184 0.816 32 H 0.223 0.777 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.374 3.359 -14.846 15.283 hybrid contribution 0.274 -0.247 1.482 1.527 sum -1.099 3.112 -13.364 13.766 Atomic orbital electron populations 1.21431 0.96194 0.99276 1.00566 1.21955 0.96342 1.00100 0.99405 1.19007 0.94316 0.89409 0.85916 0.97436 1.21209 1.30531 1.11449 0.90784 0.93077 1.25555 0.95894 0.95882 1.00846 1.70002 1.39985 1.25177 1.20755 0.85654 0.78270 0.79197 0.79073 1.20369 1.21139 1.19675 1.60889 1.04505 1.62650 1.02659 1.20847 0.97056 0.97751 0.86523 1.21766 0.89729 0.91674 0.94072 1.22991 1.04129 0.96998 0.99782 1.23840 0.88903 0.99576 0.89139 1.68322 1.13713 1.07812 1.35535 1.23871 0.94054 0.89293 0.89757 1.20637 0.96199 0.99251 0.97770 1.68093 1.13419 1.37943 1.06355 0.93801 0.93831 0.93961 0.91671 0.95741 0.93123 0.85107 0.89008 0.94672 0.81564 0.77669 0.88422 0.89628 0.88427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.04 9.39 71.98 0.68 -4.37 16 2 C -0.14 -6.53 5.50 30.60 0.17 -6.36 16 3 C 0.22 10.94 2.33 44.17 0.10 11.05 16 4 H 0.01 0.42 7.86 -2.38 -0.02 0.40 16 5 C -0.50 -27.00 7.35 25.60 0.19 -26.81 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.02 0.90 5.22 84.66 0.44 1.35 16 8 N -0.92 -51.78 11.39 21.45 0.24 -51.53 16 9 Si 0.95 43.38 29.54 68.60 2.03 45.40 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 N -0.68 -28.59 6.24 -499.45 -3.12 -31.71 16 14 C 0.11 3.88 5.84 85.56 0.50 4.38 16 15 C 0.17 5.57 6.30 42.58 0.27 5.83 16 16 C -0.22 -5.61 9.84 22.44 0.22 -5.39 16 17 C 0.15 3.40 11.30 84.69 0.96 4.36 16 18 N -0.54 -14.24 10.34 -187.85 -1.94 -16.18 16 19 C 0.30 8.34 7.64 138.75 1.06 9.40 16 20 C -0.08 -1.60 10.32 71.24 0.74 -0.86 16 21 N -0.54 -17.65 10.27 -176.01 -1.81 -19.46 16 22 H 0.04 2.06 7.05 -2.39 -0.02 2.04 16 23 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 24 H 0.04 1.69 6.42 -2.39 -0.02 1.67 16 25 H 0.06 3.46 6.25 -2.39 -0.01 3.44 16 26 H 0.02 1.06 7.24 -2.39 -0.02 1.05 16 27 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 28 H 0.33 14.04 6.55 -89.69 -0.59 13.46 16 29 H 0.09 3.11 8.05 -2.38 -0.02 3.09 16 30 H 0.04 1.32 7.23 -2.39 -0.02 1.30 16 31 H 0.17 3.58 8.06 -2.91 -0.02 3.55 16 32 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -62.12 291.59 1.22 -60.90 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.50 Total: 20.00 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: 5.32 Total: -7.42 kcal Atomic # 7 Polarization: -112.25 SS G_CDS: -6.62 Total: -118.88 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.40 kcal Total: -62.12 1.22 -60.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038037894.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.594 kcal (2) G-P(sol) polarization free energy of solvation -62.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds